genome.fa.s2.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  130  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23888144--23888239	46	2.1	46	86	0	129	26	13	12	47	1.78
23888351--23888383	13	2.4	14	90	5	50	90	3	3	3	0.58
23888547--23888579	11	2.9	12	86	13	52	24	0	0	75	0.80
23888953--23888978	12	2.2	12	100	0	52	38	7	7	46	1.61
23888987--23889053	31	2.2	31	84	10	84	22	16	14	46	1.84
23890168--23890265	51	1.9	51	82	2	124	52	8	11	28	1.66
23893750--23893795	20	2.3	21	82	17	62	30	0	2	67	1.03
23894423--23895186	374	2.0	372	80	5	862	30	21	13	34	1.92
23908579--23908624	22	2.1	22	100	0	92	39	13	21	26	1.90
23912326--23912415	17	5.4	16	75	20	78	16	2	34	46	1.60
23912286--23912404	17	7.6	16	73	17	74	18	1	30	49	1.57
23912329--23912415	33	2.6	35	80	12	110	17	2	32	48	1.60
23913465--23913495	14	2.2	14	94	0	53	3	6	12	77	1.08
23913685--23913719	10	3.4	10	88	7	52	11	5	48	34	1.63
23913798--23913832	8	4.4	8	88	0	52	14	2	2	80	0.95
23913821--23913874	23	2.4	22	82	14	65	38	0	0	61	0.96
23913836--23913881	18	2.6	18	83	16	60	45	0	0	54	0.99
23914082--23914149	23	3.0	23	78	2	66	27	25	22	25	1.99
23914016--23914258	132	1.8	133	81	6	305	37	19	19	23	1.94
23914123--23915124	110	9.2	109	83	3	1086	39	18	19	22	1.93
23914319--23914361	22	2.0	22	95	0	77	27	20	25	25	1.99
23914123--23915114	219	4.5	218	82	3	1100	39	18	19	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23914863--23914905	22	2.0	22	95	0	77	30	18	23	27	1.98
23915711--23916206	33	15.1	33	79	10	527	34	16	20	28	1.94
23915711--23916206	131	3.8	130	83	5	583	34	16	20	28	1.94
23915726--23916163	230	1.9	230	86	5	627	35	15	21	27	1.94
23917030--23917074	19	2.5	19	83	16	60	4	11	0	84	0.76
23917019--23917086	27	2.5	27	76	7	66	7	16	1	75	1.10
23922786--23922834	22	2.2	22	77	0	53	14	0	36	48	1.44
23922785--23922834	15	3.4	15	76	20	52	14	0	36	50	1.43
23922835--23922885	13	3.5	15	79	15	61	19	0	31	49	1.49
23922843--23922948	16	6.6	16	74	14	85	17	1	31	49	1.58
23922876--23922925	17	2.9	17	80	14	57	18	4	32	46	1.67
23922827--23922958	33	4.2	32	75	16	98	18	1	31	48	1.57
23924159--23924230	28	2.7	26	78	17	85	19	5	33	41	1.75
23924173--23924230	28	2.1	27	93	3	98	18	5	27	48	1.70
23924354--23924393	9	4.6	9	93	3	55	5	0	5	90	0.57
23924387--23924432	23	2.0	25	87	12	71	39	0	0	60	0.97
23924399--23924444	18	2.6	18	76	10	51	45	0	0	54	0.99
23933154--23933186	2	17.0	2	87	6	50	48	0	3	48	1.17
23938475--23938651	47	3.8	48	81	3	198	27	10	20	41	1.85
23938475--23938649	94	1.9	95	86	1	253	27	10	20	41	1.84
23938653--23938880	44	5.3	42	76	12	144	29	14	15	40	1.86
23938694--23938880	44	4.3	42	76	10	155	29	13	15	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23938692--23938880	86	2.2	86	83	4	238	29	13	15	41	1.86
23940128--23940308	90	2.0	90	97	0	344	46	12	14	27	1.80
23943287--23943478	63	3.0	64	71	8	165	39	11	13	35	1.82
23950051--23950151	28	3.6	28	91	0	166	45	32	0	21	1.52
23959564--23959610	2	23.5	2	100	0	94	48	0	0	51	1.00
23970426--23970604	89	2.0	89	91	2	288	45	12	18	23	1.83
23972129--23972220	48	1.9	47	86	2	130	34	6	16	42	1.74
23987215--23987244	2	15.0	2	92	0	51	50	0	3	46	1.18
23991740--23991773	3	11.3	3	87	12	52	35	0	0	64	0.94
24003446--24003491	21	2.3	20	85	7	58	36	0	2	60	1.09
24003520--24003588	25	2.7	26	73	13	70	37	0	1	60	1.06
24003565--24003625	23	2.7	23	80	7	63	39	1	0	59	1.08
24008915--24009812	501	1.8	495	89	5	1427	39	2	10	48	1.50
24012304--24012358	6	9.2	6	93	0	74	23	0	41	34	1.55
24012702--24012790	18	5.1	18	64	15	51	35	31	3	29	1.74
24014845--24014972	64	2.0	64	92	3	213	40	13	10	35	1.79
24024541--24024571	2	15.5	2	93	0	53	45	0	0	54	0.99
24026173--24026203	2	15.5	2	100	0	62	48	0	0	51	1.00
24043192--24043238	8	5.8	8	82	5	58	34	0	12	53	1.39
24043805--24043844	21	2.0	21	90	5	64	52	0	0	47	1.00
24044172--24044213	21	2.0	21	100	0	84	28	9	4	57	1.51
24048605--24048645	21	2.0	21	85	0	55	41	0	7	51	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24053159--24053202	23	1.9	23	85	0	61	40	20	6	31	1.79
24054169--24054214	16	2.8	17	81	15	53	60	19	0	19	1.36
24068108--24068136	2	14.5	2	100	0	58	51	0	0	48	1.00
24070135--24070176	6	6.8	6	82	12	50	28	0	0	71	0.86
24070133--24070209	26	3.0	26	80	12	79	27	0	2	70	1.01
24070133--24070176	13	3.5	13	82	14	56	29	0	0	70	0.88
24070135--24070332	4	51.8	4	69	16	79	29	2	1	66	1.12
24070136--24070322	7	26.1	7	72	20	106	29	1	1	66	1.10
24070189--24070319	3	38.3	3	70	24	66	31	2	1	64	1.15
24071157--24071202	15	2.9	16	84	15	60	13	6	0	80	0.89
24071217--24071743	58	9.1	57	86	6	661	43	5	11	40	1.64
24071504--24071539	15	2.4	15	86	13	56	38	5	0	55	1.23
24081933--24081991	14	4.3	14	74	23	54	77	0	11	10	0.98
24082982--24083155	45	3.8	45	90	2	251	22	11	22	43	1.85
24083244--24083332	7	12.1	7	78	11	72	21	0	4	74	1.00
24083245--24083333	43	2.1	42	89	10	137	22	0	4	73	1.02
24083245--24083333	4	23.0	4	76	15	89	22	0	4	73	1.02
24083366--24083424	28	2.2	26	85	11	75	32	3	1	62	1.21
24083391--24083469	23	3.5	23	78	11	83	29	6	0	64	1.18
24084262--24084302	9	4.0	10	87	12	57	29	0	0	70	0.87
24084324--24084371	6	8.3	6	86	13	66	14	2	0	83	0.74
24084319--24084371	24	2.2	25	86	10	74	15	1	0	83	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24084314--24084378	18	3.7	18	82	13	73	15	3	1	80	0.92
24085853--24085935	22	3.8	22	73	16	66	38	8	8	44	1.65
24085900--24085942	22	2.0	22	95	0	77	32	6	9	51	1.61
24086275--24086403	22	5.9	22	76	0	114	37	10	9	43	1.71
24086434--24086485	22	2.4	22	78	12	54	30	3	3	61	1.32
24086642--24086854	22	9.7	22	73	9	87	37	8	4	48	1.55
24086642--24086838	44	4.5	43	73	13	125	37	8	4	49	1.54
24086818--24086860	22	2.0	22	90	0	68	37	9	4	48	1.56
24087141--24087249	44	2.5	44	78	0	119	39	5	7	47	1.55
24087187--24087508	11	29.9	11	64	10	76	39	6	4	49	1.49
24087122--24087248	22	5.8	22	75	0	83	40	4	7	46	1.54
24087329--24087410	30	2.6	33	80	5	89	47	4	1	46	1.31
24087426--24087467	19	2.2	19	86	0	57	38	11	2	47	1.53
24087360--24087550	85	2.2	86	83	6	226	38	5	3	52	1.41
24087353--24087552	22	9.2	22	73	10	115	38	5	3	53	1.40
24087359--24087504	63	2.3	63	80	5	150	37	5	3	53	1.41
24087605--24087893	22	13.4	21	68	10	93	39	7	4	48	1.53
24087809--24087897	44	2.0	44	82	4	108	34	10	5	49	1.60
24087994--24088077	22	3.8	22	73	14	66	38	9	3	48	1.53
24087944--24088105	44	3.7	44	73	7	107	38	8	4	48	1.54
24088003--24088105	22	4.7	22	75	3	84	37	10	5	45	1.63
24088087--24088135	20	2.4	20	80	10	55	36	4	14	44	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24090266--24090310	17	2.7	17	79	3	56	46	2	0	51	1.13
24090709--24090766	22	2.6	23	78	5	75	39	13	10	36	1.79
24101908--24101961	20	2.5	23	79	11	69	38	1	9	50	1.45
24101908--24101969	20	3.0	21	75	13	65	37	1	9	51	1.45
24101963--24102069	3	36.7	3	81	5	85	31	9	0	57	1.36
24102014--24102078	18	3.7	18	85	4	60	29	6	1	63	1.28
24102560--24102600	20	2.0	20	85	4	55	21	2	14	60	1.45
24102955--24102993	18	2.2	18	90	0	60	20	0	0	79	0.73
24102955--24103010	13	4.4	13	78	13	53	19	3	0	76	0.93
24102955--24103010	7	8.8	6	77	14	51	19	3	0	76	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131