genome.fa.s2.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  69  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13171470--13171524	26	2.1	27	86	3	76	25	21	20	32	1.97
13172727--13172795	31	2.2	31	94	0	120	31	18	10	39	1.84
13174182--13174234	26	2.0	26	96	0	97	26	24	20	28	1.99
13177511--13177563	26	2.0	26	92	0	88	26	26	20	26	1.99
13175801--13181012	899	5.9	870	84	4	6163	26	24	24	25	2.00
13179313--13179360	25	1.9	25	95	0	87	25	27	22	25	2.00
13181075--13182491	716	2.0	715	89	2	2161	26	23	23	26	2.00
13182602--13182651	26	1.9	26	91	0	82	28	26	18	28	1.98
13183506--13183557	26	2.0	26	96	0	95	25	28	19	26	1.98
13181731--13184293	907	2.8	893	88	4	3560	26	24	23	25	2.00
13185128--13185179	26	2.0	26	100	0	104	26	26	19	26	1.99
13186021--13186098	26	3.0	26	86	3	113	29	24	19	26	1.98
13187650--13187701	26	2.0	26	100	0	104	26	26	19	26	1.99
13187675--13189133	717	2.0	711	87	2	2093	26	24	22	25	2.00
13189105--13189529	185	2.3	185	84	2	559	23	27	26	22	1.99
13189448--13189500	26	2.0	26	92	0	88	30	26	16	26	1.97
13190337--13190388	26	2.0	26	88	0	77	30	17	21	30	1.96
13191215--13191267	26	2.0	26	96	0	97	26	26	22	24	2.00
13192120--13192172	26	2.0	26	85	0	70	30	24	18	26	1.98
13193016--13193068	26	2.0	26	100	0	106	26	26	20	26	1.99
13193147--13193180	11	3.1	11	91	0	50	20	38	26	14	1.91
13193945--13193997	26	2.0	26	85	0	70	28	20	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13194846--13194898	26	2.0	26	96	0	97	28	26	18	26	1.98
13190461--13200713	898	11.4	896	86	3	13213	25	24	23	25	2.00
13195744--13195795	26	2.0	26	96	0	95	26	21	19	32	1.97
13196630--13196682	26	2.0	26	92	0	88	26	22	20	30	1.98
13198439--13198491	26	2.0	26	96	0	97	24	18	22	33	1.97
13199338--13199388	26	2.0	26	96	0	93	25	25	19	29	1.99
13196229--13200713	899	5.0	896	85	2	5684	25	24	24	25	2.00
13200237--13200289	26	2.0	26	96	0	97	24	26	22	26	2.00
13200719--13205242	715	6.3	712	87	2	6337	26	23	23	26	2.00
13205346--13205398	26	2.0	26	96	0	97	28	26	18	26	1.98
13204483--13207017	894	2.8	892	88	3	3685	26	23	23	25	2.00
13206272--13207749	718	2.1	718	89	1	2255	26	23	24	25	2.00
13206961--13216904	907	11.2	874	81	7	10717	25	25	24	25	2.00
13208734--13208786	26	2.0	26	96	0	97	28	26	18	26	1.98
13209609--13209688	26	3.1	26	87	0	115	26	22	21	30	1.99
13210116--13210173	26	2.2	27	80	17	68	58	6	8	25	1.53
13211207--13211232	12	2.2	12	100	0	52	0	65	26	7	1.20
13213213--13213265	26	2.0	26	92	0	88	30	24	18	26	1.98
13214107--13214158	26	2.0	26	88	0	77	26	26	21	25	1.99
13215015--13215067	26	2.0	26	88	0	79	28	22	18	30	1.98
13218322--13218373	25	2.0	26	88	3	79	28	23	21	26	1.99
13219208--13219260	26	2.0	26	96	0	97	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13220993--13221045	26	2.0	26	96	0	97	28	26	18	26	1.98
13217450--13221779	888	4.9	898	85	3	5618	25	24	23	25	2.00
13222578--13222627	26	1.9	26	100	0	100	22	30	20	28	1.98
13222604--13224055	714	2.0	715	89	2	2220	27	23	23	25	2.00
13224195--13224247	26	2.0	26	96	0	97	24	26	22	26	2.00
13224705--13224757	26	2.0	26	92	0	88	28	20	18	32	1.97
13225600--13225652	26	2.0	26	92	0	88	28	24	18	28	1.98
13229979--13230031	26	2.0	26	92	0	88	30	26	16	26	1.97
13229116--13235228	900	6.8	896	86	4	7974	25	24	24	25	2.00
13231851--13231883	11	3.0	11	100	0	66	18	36	36	9	1.82
13226529--13235207	877	9.9	861	84	7	9882	25	24	24	25	2.00
13232633--13232685	26	2.0	26	92	0	88	26	28	18	26	1.98
13233533--13233585	26	2.0	26	96	0	97	26	24	20	28	1.99
13234443--13234495	26	2.0	26	96	0	97	24	26	22	26	2.00
13231752--13235237	899	3.9	900	88	2	4976	25	24	24	25	2.00
13234469--13235917	715	2.0	707	89	2	2237	26	23	23	26	2.00
13236048--13236100	26	2.0	26	89	7	81	24	22	20	32	1.98
13237743--13237798	26	2.2	26	90	6	87	32	23	17	26	1.97
13238637--13238689	26	2.0	26	88	0	79	26	22	20	30	1.98
13236888--13239646	895	3.1	884	85	4	3701	25	24	24	25	2.00
13239524--13239577	26	2.1	26	96	0	99	27	27	18	25	1.98
13239675--13239766	8	11.4	8	72	23	68	52	1	0	46	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13239675--13239763	40	2.2	41	84	8	119	52	1	0	46	1.07
13240438--13240496	29	2.0	29	90	0	91	23	32	32	11	1.91
13240467--13240565	45	2.2	45	94	0	171	17	30	39	13	1.87
13241649--13246780	903	5.8	877	84	5	6345	26	24	24	25	2.00
13245196--13245248	26	2.0	26	92	0	88	26	22	20	30	1.98
13246806--13246858	26	2.0	26	96	0	97	26	24	20	28	1.99
13246832--13249787	828	3.4	836	81	8	3019	25	24	24	25	2.00
13249400--13249452	26	2.0	26	92	0	88	28	24	18	28	1.98
13249784--13251481	717	2.4	717	89	2	2552	27	23	22	25	2.00
13251692--13251741	26	1.9	26	95	0	91	28	26	16	30	1.96
13252031--13254194	898	2.4	883	86	4	2948	26	23	23	26	2.00
13253425--13253477	26	2.0	26	92	0	88	26	28	18	26	1.98
13254829--13254853	4	6.2	4	100	0	50	0	72	28	0	0.86
13253451--13254922	703	2.1	714	87	2	2072	26	23	23	26	2.00
13255035--13255087	26	2.0	26	96	0	97	26	24	22	26	2.00
13255061--13257240	708	3.1	698	84	6	2861	27	23	23	26	2.00
13257344--13257396	26	2.0	26	92	0	88	32	24	15	28	1.95
13258235--13258287	26	2.0	26	92	0	88	24	24	22	28	2.00
13256533--13258343	886	2.0	890	87	2	2615	25	25	24	24	2.00
13258364--13258415	25	2.0	26	88	3	79	28	23	19	28	1.98
13258225--13258472	129	1.9	129	85	4	340	22	22	29	25	1.99
13259249--13260732	714	2.1	716	90	3	2347	26	23	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13260870--13262354	712	2.1	715	88	2	2198	27	24	23	25	2.00
13262447--13262497	26	2.0	26	96	0	93	29	25	17	27	1.98
13264225--13264277	26	2.0	26	92	0	88	28	24	18	28	1.98
13265116--13265168	26	2.0	26	92	7	90	26	26	20	26	1.99
13261582--13267689	890	6.9	895	82	7	6776	26	24	22	25	2.00
13266893--13266945	26	2.0	26	100	0	106	26	26	20	26	1.99
13268524--13268573	26	1.9	26	95	0	91	24	24	22	30	1.99
13270871--13270923	26	2.0	26	89	7	81	32	26	16	24	1.97
13273575--13273639	33	2.0	33	96	0	121	7	24	32	35	1.84
13274411--13274463	26	2.0	26	92	0	88	28	24	20	26	1.99
13275311--13275362	26	2.0	26	100	0	104	26	26	19	26	1.99
13276187--13276239	26	2.0	26	96	0	97	26	24	20	28	1.99
13277075--13277127	26	2.0	26	100	0	106	26	26	20	26	1.99
13273602--13277838	873	4.8	889	87	4	5869	26	24	23	25	2.00
13277812--13277864	26	2.0	26	96	0	97	26	24	20	28	1.99
13277064--13278582	736	2.1	741	90	1	2395	26	23	23	26	2.00
13277801--13281499	901	4.1	900	87	2	5048	25	24	24	25	2.00
13281403--13281452	26	2.0	26	96	4	93	28	24	20	28	1.99
13281498--13288289	909	7.6	880	84	5	7871	26	24	23	25	2.00
13283911--13283963	26	2.0	26	89	7	81	26	22	22	28	1.99
13284820--13284872	26	2.0	26	92	0	88	28	22	20	28	1.99
13285725--13285777	26	2.0	26	88	0	79	28	26	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13287500--13287552	26	2.0	26	92	0	88	26	30	16	26	1.97
13287526--13289692	703	3.1	703	87	5	3147	26	23	23	26	2.00
13289813--13289883	26	2.7	26	100	0	142	29	23	15	30	1.95
13289991--13291105	566	2.0	565	90	1	1743	28	22	20	27	1.99
13291285--13291357	26	2.8	26	93	0	128	27	26	20	26	1.99
13293816--13296961	714	4.4	717	84	4	3890	26	23	23	26	2.00
13297074--13297125	26	2.0	27	96	3	97	25	26	19	28	1.98
13297100--13299271	706	3.0	708	86	4	2952	26	23	23	26	2.00
13301994--13302047	26	2.1	26	89	0	81	27	24	18	29	1.98
13302893--13302943	26	2.0	26	92	0	84	29	27	13	29	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131