genome.fa.s2.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  129  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23676306--23677002	231	3.0	230	78	5	638	20	22	14	42	1.89
23676308--23676971	117	5.8	112	74	10	378	21	21	14	42	1.88
23677261--23677310	26	1.9	26	83	0	64	24	24	22	30	1.99
23677342--23677427	3	27.7	3	82	11	68	30	6	0	62	1.21
23683322--23683359	20	1.9	20	84	10	51	68	2	2	26	1.16
23689705--23689752	25	2.0	24	83	4	60	50	14	2	33	1.55
23690449--23690489	3	14.0	3	87	5	57	29	4	0	65	1.13
23692137--23692509	144	2.6	144	79	4	403	41	12	13	33	1.81
23693087--23693220	70	1.9	70	80	3	153	47	10	20	20	1.79
23693235--23693306	35	2.1	35	92	5	119	50	11	15	23	1.76
23693232--23693408	35	5.1	34	75	13	83	48	13	18	19	1.81
23693464--23693641	35	5.1	34	67	14	94	42	11	23	22	1.85
23693464--23693690	70	3.3	70	74	9	212	44	9	22	23	1.82
23694166--23694317	35	4.3	35	71	11	114	50	15	18	16	1.79
23694166--23694502	70	4.8	70	76	2	257	49	14	19	17	1.80
23694222--23694496	140	2.0	140	80	0	307	48	14	20	17	1.81
23694540--23694836	100	3.0	100	75	8	268	31	16	18	32	1.94
23694634--23694779	32	4.5	32	74	5	123	27	17	19	35	1.94
23694634--23694772	65	2.1	66	82	4	165	28	17	20	33	1.96
23700501--23700574	6	12.3	6	92	0	103	29	4	1	64	1.20
23700501--23700574	9	8.2	9	89	0	103	29	4	1	64	1.20
23702175--23702719	145	3.8	144	82	5	580	40	12	13	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23702177--23702719	290	1.9	289	81	5	666	40	12	13	33	1.82
23718041--23718074	16	2.1	16	100	0	68	17	5	5	70	1.28
23723072--23723108	18	2.0	20	89	10	60	62	0	24	13	1.31
23723386--23723486	8	12.0	8	68	20	55	74	0	22	2	0.96
23723386--23723503	17	6.4	17	74	18	94	75	0	21	3	0.95
23723455--23723545	15	6.5	14	65	25	50	80	0	14	5	0.89
23723424--23723545	35	3.6	32	73	19	79	76	0	19	4	0.95
23723397--23723547	9	16.0	9	69	17	76	76	0	19	4	0.96
23723386--23723536	59	2.5	60	80	12	159	74	0	19	5	1.00
23723458--23723539	28	2.9	29	80	8	82	79	0	14	6	0.92
23724964--23725627	41	16.3	41	80	7	624	22	12	18	46	1.82
23724964--23725701	82	9.0	81	82	4	746	23	12	17	46	1.82
23724964--23725627	123	5.4	121	81	6	687	22	12	18	46	1.82
23725536--23725672	46	3.1	46	83	7	160	25	14	13	45	1.82
23724961--23725709	41	18.3	40	78	8	465	23	12	17	46	1.82
23726412--23726471	31	1.9	31	93	0	102	21	15	16	46	1.83
23731149--23731194	20	2.3	21	82	17	62	30	0	2	67	1.03
23731771--23732561	361	2.2	362	82	5	949	29	21	15	33	1.95
23741076--23741110	16	2.2	16	94	0	61	28	11	11	48	1.74
23748298--23748328	15	2.1	15	93	0	53	35	0	3	61	1.12
23761040--23761246	47	4.3	47	83	3	252	28	10	19	40	1.85
23761040--23761246	95	2.2	95	84	6	274	28	10	19	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23761332--23761518	43	4.3	43	73	11	168	32	13	14	39	1.86
23761289--23761528	86	2.8	86	79	6	218	32	15	14	38	1.87
23761694--23761733	18	2.2	18	86	8	55	0	22	0	77	0.77
23763687--23763722	10	3.6	10	96	0	63	44	0	0	55	0.99
23765507--23765629	64	1.9	64	81	3	149	35	13	17	32	1.90
23767271--23767301	12	2.6	12	100	0	62	38	32	9	19	1.84
23772610--23772710	28	3.6	28	89	0	157	45	31	0	22	1.53
23778786--23778818	2	17.0	2	93	6	59	48	0	0	51	1.00
23780886--23780925	16	2.3	19	79	16	50	45	15	7	32	1.74
23780929--23781020	47	1.9	47	86	2	130	42	16	6	34	1.74
23782544--23782720	88	2.0	89	89	1	275	23	18	12	44	1.85
23787720--23787892	90	1.9	90	95	0	310	23	15	11	49	1.77
23791324--23791357	6	5.7	6	92	0	50	17	35	20	26	1.95
23796546--23796609	3	21.7	3	79	3	67	65	6	0	28	1.16
23797623--23797671	23	2.1	24	92	3	82	38	14	10	36	1.80
23797960--23798053	46	2.0	46	100	0	188	51	2	8	38	1.45
23797981--23798054	23	3.2	24	70	14	82	51	1	9	37	1.43
23798620--23798651	9	3.7	9	91	8	57	81	9	9	0	0.88
23798621--23798650	8	3.6	8	91	8	51	80	10	10	0	0.92
23798816--23798858	14	3.3	13	84	15	54	76	4	16	2	1.05
23801467--23801498	15	2.1	15	94	0	55	71	0	28	0	0.86
23802396--23802700	32	9.3	32	69	7	114	30	19	18	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23802396--23802652	100	2.6	97	79	6	223	30	19	18	31	1.96
23802597--23802740	64	2.2	64	79	6	139	31	17	18	31	1.94
23802784--23803069	70	4.1	70	75	8	210	19	18	11	49	1.78
23802950--23803071	35	3.5	34	70	8	86	20	19	10	49	1.78
23802922--23803086	70	2.4	70	78	4	181	18	19	14	47	1.83
23803231--23803344	34	3.3	34	73	10	97	22	18	10	48	1.79
23803383--23803494	35	3.2	35	72	0	107	22	18	11	47	1.81
23803472--23803582	35	3.2	35	73	14	111	22	19	11	45	1.83
23803404--23803622	70	3.1	69	79	3	188	21	20	10	46	1.81
23804086--23804178	35	2.7	35	73	8	91	21	21	9	47	1.79
23804339--23804375	18	2.1	18	94	0	65	86	10	0	2	0.67
23804789--23805141	145	2.4	143	77	4	341	34	10	12	42	1.77
23805654--23805716	2	31.5	2	96	0	117	49	1	49	0	1.10
23806828--23806887	3	20.0	3	100	0	120	66	0	0	33	0.92
23812151--23812189	21	2.0	18	85	14	51	7	5	5	82	0.96
23817907--23818792	40	21.9	41	81	7	737	23	13	17	45	1.84
23817907--23818812	81	11.1	81	79	6	708	24	13	17	45	1.84
23818877--23818912	19	1.9	18	88	5	54	83	0	8	8	0.82
23850184--23850288	28	3.8	28	90	0	174	47	33	0	19	1.49
23856775--23857133	142	2.5	143	87	3	508	36	14	18	30	1.91
23860991--23861544	147	3.8	142	82	5	606	33	14	10	40	1.81
23864060--23864109	3	16.7	3	82	0	55	70	2	2	26	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23864074--23864115	21	2.0	21	85	0	57	73	2	2	21	1.06
23864907--23864943	19	1.9	19	94	0	65	27	5	10	56	1.55
23866053--23866104	16	3.4	15	80	12	52	80	3	13	1	0.93
23866284--23866312	12	2.5	12	94	5	51	79	6	13	0	0.93
23868386--23868412	6	4.5	6	100	0	54	85	14	0	0	0.61
23869774--23870111	32	10.2	32	69	13	141	31	19	18	30	1.96
23869779--23869971	99	1.9	99	85	4	264	32	18	17	31	1.94
23870030--23870134	32	3.3	32	84	5	140	32	19	20	27	1.97
23869998--23870143	64	2.2	66	82	9	192	30	19	19	30	1.96
23870169--23870412	70	3.5	68	73	9	174	19	18	12	49	1.79
23870313--23870434	35	3.5	34	75	8	120	20	18	10	50	1.77
23870337--23870499	35	4.7	34	74	5	112	20	21	11	46	1.81
23870309--23870499	69	2.8	69	78	7	192	19	21	10	47	1.80
23870813--23870915	35	2.9	35	81	5	120	21	18	10	49	1.77
23870813--23871132	70	4.6	69	72	10	206	21	20	11	46	1.81
23870974--23871076	35	2.9	35	78	2	100	21	19	9	49	1.76
23871009--23871089	35	2.3	35	80	4	92	19	19	9	50	1.75
23871323--23871405	35	2.4	34	81	4	94	22	13	9	54	1.68
23873743--23873860	3	39.0	3	90	5	184	66	0	2	30	1.11
23881456--23881499	7	6.0	7	84	10	61	13	0	4	81	0.83
23881456--23881499	15	3.0	14	90	3	61	13	0	4	81	0.83
23885902--23886006	9	11.6	9	71	12	81	78	0	19	2	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23885931--23886044	13	8.0	15	71	17	57	75	0	20	4	0.97
23885912--23886050	53	2.5	55	81	10	142	75	0	19	5	0.98
23887469--23887791	80	4.0	79	79	6	281	23	13	16	47	1.82
23887460--23887893	41	10.7	40	77	6	338	23	13	17	46	1.83
23887863--23887921	28	2.1	28	87	0	82	23	11	22	42	1.86
23887891--23888279	41	9.4	41	79	6	347	23	15	18	42	1.88
23887826--23887954	69	1.9	68	90	4	206	21	15	19	43	1.88
23887891--23888270	40	9.2	40	78	6	337	23	15	18	42	1.89
23887731--23888084	191	1.8	192	84	4	491	21	14	19	44	1.86
23887660--23888116	232	2.0	230	83	7	577	22	15	18	43	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131