genome.fa.s2.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  68  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13055454--13055517	17	3.7	17	82	15	69	25	0	1	73	0.92
13055458--13055518	6	10.2	6	76	13	54	22	0	1	75	0.89
13055510--13055583	31	2.4	30	88	4	103	24	10	1	63	1.34
13055906--13055953	25	2.0	24	83	4	60	25	6	16	52	1.67
13056437--13056514	18	4.2	20	82	14	64	15	5	0	79	0.90
13056463--13056516	18	3.2	16	89	7	81	11	3	0	85	0.73
13056463--13056516	8	6.4	8	87	12	81	11	3	0	85	0.73
13056446--13056516	8	7.9	9	80	14	76	12	5	0	81	0.85
13056446--13056508	26	2.3	27	89	10	94	12	6	0	80	0.88
13056446--13056514	27	2.6	27	82	13	88	13	5	0	81	0.87
13056539--13056932	59	6.7	57	83	8	497	44	7	13	34	1.73
13056530--13056932	179	2.3	174	86	6	562	44	8	13	33	1.73
13060464--13060499	11	3.3	11	96	0	63	88	0	8	2	0.59
13060833--13060906	19	3.8	19	81	13	80	77	0	18	4	0.93
13060865--13060925	7	8.1	7	82	10	68	81	0	14	3	0.80
13060862--13060906	11	4.2	11	85	2	56	86	0	13	0	0.57
13060837--13060923	37	2.3	38	80	15	99	78	0	16	5	0.94
13062112--13062453	42	8.2	42	93	2	539	24	18	23	34	1.96
13062112--13062453	127	2.7	125	92	3	564	24	18	23	34	1.96
13062112--13062453	83	4.1	83	89	3	524	24	18	23	34	1.96
13062436--13062471	18	2.0	18	100	0	72	16	22	33	27	1.95
13062395--13062512	59	2.0	59	93	0	200	22	17	26	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13062454--13062553	41	2.4	41	93	0	164	23	18	25	34	1.96
13062354--13062553	100	2.0	101	92	1	330	23	18	25	34	1.96
13062560--13062617	1	58.0	1	75	0	53	87	12	0	0	0.53
13062562--13062617	11	5.5	10	85	10	78	87	12	0	0	0.54
13062560--13062617	12	4.9	12	83	10	75	87	12	0	0	0.53
13062562--13062611	22	2.3	22	100	0	100	88	12	0	0	0.53
13062794--13062847	9	5.5	10	80	14	51	29	0	7	62	1.22
13062875--13062917	23	1.9	22	85	4	59	34	0	4	60	1.17
13062811--13062921	31	3.7	29	78	12	93	35	0	5	58	1.27
13062882--13062921	16	2.6	16	84	15	57	35	0	2	62	1.09
13062875--13062951	19	4.1	18	74	15	59	27	0	3	68	1.06
13062903--13062960	18	3.4	17	81	13	66	22	0	1	75	0.89
13062950--13063059	32	3.4	31	79	14	114	23	8	2	65	1.33
13063346--13063376	11	2.8	11	100	0	62	35	6	0	58	1.24
13063952--13064049	20	4.8	20	70	18	69	16	6	0	77	0.96
13063978--13064050	8	8.6	8	78	15	76	15	5	0	79	0.90
13063974--13064038	28	2.4	28	84	7	89	15	3	0	81	0.81
13063979--13064050	14	5.3	13	74	12	56	15	5	0	79	0.91
13064066--13064352	120	2.4	117	86	6	407	44	8	13	33	1.74
13064071--13064350	59	4.7	59	88	3	402	45	7	14	33	1.73
13065509--13065559	26	2.0	26	88	7	77	27	25	15	31	1.96
13066399--13066449	26	2.0	26	88	0	75	29	25	15	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13064829--13071207	890	7.1	902	85	3	8223	25	24	23	25	2.00
13067297--13067349	26	2.0	26	100	0	106	30	26	16	26	1.97
13068186--13068238	26	2.0	26	96	0	97	28	26	18	26	1.98
13069986--13070036	26	2.0	26	92	0	84	25	27	19	27	1.99
13071421--13071473	26	2.0	26	92	0	88	28	24	18	28	1.98
13073223--13073275	26	2.0	26	92	0	88	26	26	20	26	1.99
13071228--13074917	902	4.1	898	85	2	4708	25	24	24	25	2.00
13074117--13074169	26	2.0	26	96	0	97	26	24	20	28	1.99
13075564--13075616	26	2.0	26	96	0	97	28	26	18	26	1.98
13076703--13078155	707	2.0	712	87	3	2079	27	24	22	26	2.00
13078729--13078781	26	2.0	26	92	0	88	28	22	20	28	1.99
13077966--13078847	445	2.0	447	82	5	1082	23	27	24	24	2.00
13082014--13082065	25	2.0	26	92	3	88	25	25	21	28	1.99
13079521--13084357	881	5.4	902	81	7	5334	26	24	23	25	2.00
13084472--13084522	26	2.0	26	92	0	84	29	27	17	25	1.98
13083690--13085020	664	2.0	666	85	4	1802	27	24	23	25	2.00
13085353--13085403	26	2.0	26	96	0	93	29	25	17	27	1.98
13084371--13086806	881	2.7	885	88	3	3272	27	25	22	24	2.00
13089408--13089460	26	2.0	26	96	0	97	24	26	22	26	2.00
13090300--13090351	26	2.0	26	96	0	95	32	23	17	26	1.96
13088554--13091011	896	2.8	898	86	3	3364	26	24	23	25	2.00
13091020--13091049	15	2.0	15	100	0	60	0	46	20	33	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13090326--13093262	719	4.1	718	90	2	4238	26	24	23	26	2.00
13099902--13099954	26	2.0	26	89	7	81	30	24	16	28	1.97
13100795--13100847	26	2.0	26	88	0	79	32	24	16	26	1.97
13101698--13101746	25	2.0	25	88	11	75	28	28	18	24	1.98
13099834--13102667	893	3.2	881	84	6	3687	25	25	23	24	2.00
13104082--13104134	26	2.0	26	96	0	97	26	24	20	28	1.99
13103211--13106658	897	3.8	895	85	3	4387	26	24	24	25	2.00
13110145--13110197	26	2.0	26	92	0	88	28	22	20	28	1.99
13111035--13111086	26	2.0	26	92	0	86	32	21	17	28	1.96
13108385--13114018	861	6.4	869	82	7	5402	25	24	24	25	2.00
13115839--13115890	26	2.0	26	96	3	97	26	25	21	26	1.99
13115027--13120961	880	6.7	898	84	5	7468	25	24	23	25	2.00
13118523--13118574	26	2.0	26	96	0	95	26	25	19	28	1.98
13120191--13121668	721	2.0	725	87	2	2090	27	24	22	25	2.00
13121890--13121942	26	2.0	26	88	0	79	30	24	16	28	1.97
13124241--13124293	26	2.0	26	92	0	88	30	24	18	26	1.98
13125139--13125191	26	2.0	26	92	0	88	24	24	22	28	2.00
13126939--13126991	26	2.0	26	92	0	88	26	22	20	30	1.98
13122618--13137336	903	16.4	900	86	3	18710	25	24	23	25	2.00
13128729--13128781	26	2.0	26	96	0	97	24	28	20	26	1.99
13129617--13129686	26	2.7	26	100	0	140	30	27	15	27	1.96
13130507--13130559	26	2.0	26	96	0	97	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13131398--13131450	26	2.0	26	96	0	97	24	26	22	26	2.00
13132296--13132353	26	2.2	26	87	3	80	29	22	20	27	1.99
13133887--13133914	8	3.5	8	100	0	56	0	64	25	10	1.26
13135891--13135943	26	2.0	26	92	7	90	28	22	20	28	1.99
13137302--13137580	138	2.0	138	97	0	522	18	31	24	25	1.98
13138423--13138476	26	2.1	26	89	0	81	25	27	18	27	1.98
13138449--13140194	725	2.4	708	84	5	2257	25	23	24	26	2.00
13140192--13142496	717	3.2	708	87	4	3225	26	24	22	25	2.00
13142600--13142652	26	2.0	26	96	0	97	28	24	20	26	1.99
13141741--13147872	899	6.8	895	83	6	7493	25	24	24	25	2.00
13146201--13146253	26	2.0	26	96	0	97	24	26	22	26	2.00
13147101--13147153	26	2.0	26	96	0	97	26	26	18	28	1.98
13147127--13148613	721	2.1	718	88	3	2209	27	22	23	26	2.00
13148724--13148776	26	2.0	26	96	0	97	26	24	20	28	1.99
13147845--13151254	899	3.8	892	85	3	4404	26	24	23	25	2.00
13151228--13151280	26	2.0	26	96	0	97	26	24	20	28	1.99
13153187--13153239	26	2.0	26	92	0	88	30	24	18	26	1.98
13154322--13154374	26	2.0	26	92	0	88	28	28	18	24	1.98
13155948--13156000	26	2.0	26	96	0	97	26	26	18	28	1.98
13156533--13156585	26	2.0	26	92	0	88	26	28	18	26	1.98
13157429--13157481	26	2.0	26	92	0	88	24	26	20	28	1.99
13156406--13158203	897	2.0	900	88	2	2698	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13158962--13159009	25	2.0	24	91	4	78	33	25	12	29	1.92
13159147--13160451	718	1.8	703	87	3	1943	28	23	21	26	1.99
13161461--13161511	26	2.0	26	96	0	93	27	27	17	27	1.98
13159686--13161898	907	2.4	900	85	5	2853	24	24	24	25	2.00
13162856--13162908	26	2.0	26	96	0	97	26	24	20	28	1.99
13163758--13163813	26	2.2	26	90	0	85	28	23	19	28	1.98
13162035--13164554	905	2.8	901	87	2	3621	26	24	23	26	2.00
13167090--13167140	26	2.0	26	92	0	84	27	29	15	27	1.96
13168611--13168636	4	6.5	4	100	0	52	0	73	26	0	0.84
13168799--13175847	903	7.8	902	84	5	8739	25	24	24	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131