Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  30  of  131  ( 15626 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7004929--7005059
21
5.9
21
68
17
68
55
11
3
29
1.50
7005044--7005089
16
2.7
17
83
10
58
52
8
8
30
1.62
7005042--7005089
17
2.8
17
81
9
62
52
8
8
31
1.61
7007101--7007159
29
2.0
30
86
3
84
40
1
6
50
1.39
7007191--7007259
29
2.4
29
85
7
88
50
0
0
49
1.00
7008067--7008093
6
4.5
6
100
0
54
85
0
0
14
0.61
7011167--7011201
13
2.6
14
86
9
54
20
8
0
71
1.11
7018680--7018707
10
2.8
10
100
0
56
0
0
10
89
0.49
7024751--7024794
22
2.0
22
82
8
54
43
2
4
50
1.35
7034466--7034523
25
2.2
27
81
6
66
63
1
17
17
1.39
7044938--7044976
7
5.3
7
90
9
60
69
0
0
30
0.89
7044938--7044976
15
2.6
14
88
11
60
69
0
0
30
0.89
7044935--7044977
14
3.1
14
90
9
70
65
0
0
34
0.93
7046143--7047351
406
3.0
405
90
3
1895
26
20
18
34
1.96
7052056--7052102
15
3.1
15
82
11
53
23
0
10
65
1.23
7052204--7052259
15
3.6
14
80
17
58
30
1
0
67
1.01
7052204--7052259
17
3.6
15
77
20
53
30
1
0
67
1.01
7052203--7052259
30
1.9
29
86
10
80
31
1
0
66
1.02
7064852--7064931
41
2.0
41
87
0
115
32
11
16
40
1.84
7066243--7066295
23
2.1
26
83
13
67
49
1
3
45
1.31
7066281--7066356
12
6.6
12
70
7
50
64
1
2
31
1.15
7066416--7066478
26
2.3
27
78
13
65
50
1
0
47
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7069085--7069127
8
5.4
8
91
0
68
9
44
0
46
1.35
7070340--7070371
2
16.0
2
93
0
55
50
3
0
46
1.17
7074236--7074286
19
2.8
18
76
11
59
60
0
1
37
1.08
7074547--7074593
12
3.9
12
83
5
51
38
0
2
59
1.09
7074547--7074593
23
2.0
25
83
8
62
38
0
2
59
1.09
7074545--7074584
11
3.5
11
86
6
53
37
0
2
60
1.11
7074985--7075030
13
3.8
13
80
13
53
36
0
0
63
0.95
7074983--7075030
24
2.0
24
87
0
69
39
0
0
60
0.97
7074998--7075035
13
3.1
13
85
7
53
36
0
0
63
0.95
7085209--7085233
10
2.5
10
100
0
50
56
0
0
44
0.99
7088679--7088703
12
2.1
12
100
0
50
28
0
40
32
1.57
7092235--7092307
29
2.5
30
84
6
96
60
0
0
39
0.97
7092279--7092329
22
2.3
22
90
6
77
58
0
0
41
0.98
7092319--7092381
18
3.5
18
68
21
51
44
1
1
52
1.20
7092876--7092945
27
2.5
28
79
11
81
47
0
2
50
1.16
7096265--7096307
22
2.0
22
85
0
59
60
0
6
32
1.23
7098154--7098208
3
18.3
3
96
0
101
0
30
0
69
0.89
7104015--7104072
3
19.7
3
77
13
50
27
1
3
67
1.17
7104912--7105275
123
2.9
120
75
16
339
49
4
11
34
1.58
7105104--7105299
58
3.4
56
82
6
216
50
4
10
34
1.58
7104908--7105383
187
2.5
189
86
7
640
49
4
11
35
1.59
7105279--7105315
15
2.4
16
82
13
51
62
2
0
35
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7105230--7105372
73
2.0
73
82
8
177
51
4
9
34
1.55
7105296--7105406
58
1.9
58
81
7
136
51
4
9
34
1.56
7109206--7109245
13
3.0
13
85
3
53
87
7
0
5
0.66
7126819--7126848
14
2.1
14
93
0
51
63
0
6
30
1.20
7127565--7127609
24
1.9
23
90
4
72
55
2
0
42
1.12
7131113--7131180
22
3.3
21
75
22
72
44
0
0
55
0.99
7131726--7131755
2
15.0
2
100
0
60
50
0
0
50
1.00
7142303--7142394
27
3.4
25
67
20
60
61
4
2
31
1.27
7142621--7142672
28
1.9
27
84
7
70
34
3
1
59
1.27
7142649--7142701
20
2.6
21
79
5
65
33
3
1
60
1.26
7142742--7142776
14
2.7
13
91
8
54
20
0
5
74
1.02
7142784--7142844
19
3.3
18
84
10
63
26
3
1
68
1.14
7142784--7142866
17
4.5
19
82
10
77
30
2
1
66
1.12
7142800--7142849
9
5.6
9
83
9
66
30
0
2
68
1.01
7142800--7142866
26
2.5
25
83
11
80
32
0
1
65
1.02
7142800--7142866
9
7.6
8
77
14
62
32
0
1
65
1.02
7143300--7143375
21
3.7
21
68
15
59
64
1
2
31
1.15
7143300--7143375
10
7.4
10
74
11
64
64
1
2
31
1.15
7143525--7143566
18
2.3
18
100
0
84
47
0
9
42
1.36
7143974--7144129
9
16.5
10
70
11
73
34
4
1
58
1.29
7143930--7143989
30
2.0
30
83
6
77
16
6
1
75
1.10
7143967--7144125
19
8.5
18
67
11
79
33
4
2
59
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7148704--7148753
22
2.3
21
83
6
64
42
0
6
52
1.26
7161491--7161518
1
28.0
1
100
0
56
100
0
0
0
0.00
7164724--7164774
18
2.8
19
74
20
54
47
5
0
47
1.26
7167190--7167245
19
2.9
18
75
19
51
44
3
3
48
1.37
7167246--7167288
19
2.3
18
84
11
59
58
2
0
39
1.11
7167533--7167568
14
2.6
14
90
0
54
69
0
11
19
1.18
7167878--7167918
19
2.1
20
86
4
57
31
0
7
60
1.24
7170827--7170863
18
2.1
18
89
0
56
64
0
0
35
0.94
7170962--7171012
19
2.6
22
77
22
60
60
0
0
39
0.97
7176644--7176697
17
3.5
17
71
21
55
29
1
5
62
1.28
7176914--7176946
3
11.0
3
100
0
66
33
0
0
66
0.92
7178295--7178333
20
2.0
20
85
10
53
76
0
5
17
0.96
7188625--7188661
1
37.0
1
100
0
74
0
0
0
100
0.00
7190623--7190671
2
25.0
2
91
4
82
0
53
0
46
1.00
7199065--7199289
109
2.1
109
92
0
369
44
19
6
29
1.76
7206557--7206629
36
2.0
36
100
0
146
21
16
21
39
1.92
7207816--7207859
2
22.0
2
90
0
70
50
4
0
45
1.22
7213118--7213154
19
1.9
19
88
0
56
37
8
0
54
1.30
7215667--7215722
21
2.7
21
86
5
69
55
0
0
44
0.99
7216764--7216788
12
2.1
12
100
0
50
68
0
8
24
1.16
7217810--7217910
30
3.4
29
80
9
105
37
11
2
47
1.56
7219857--7219895
16
2.5
15
80
8
51
46
0
17
35
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7225750--7225786
6
6.5
6
87
6
51
51
0
0
48
1.00
7225750--7225782
10
3.0
11
91
8
50
54
0
0
45
0.99
7225806--7226243
58
7.2
59
70
19
215
47
5
11
35
1.62
7226033--7226072
15
2.6
15
92
4
62
52
7
0
40
1.30
7226069--7226232
65
2.6
61
85
9
199
46
4
13
34
1.64
7236586--7236657
8
9.0
8
81
4
83
83
0
4
12
0.79
7236586--7236656
9
7.7
9
78
12
72
84
0
4
11
0.75
7236588--7236657
23
3.0
22
83
10
86
82
0
4
12
0.80
7236585--7236654
13
5.0
14
75
15
56
82
0
5
11
0.82
7237356--7237407
16
2.8
20
69
25
58
25
19
19
36
1.95
7237708--7237972
88
3.0
88
82
3
309
22
12
16
47
1.80
7237689--7237945
89
2.9
89
83
3
299
22
12
16
48
1.80
7237708--7237972
133
2.0
133
85
2
354
22
12
16
47
1.80
7237708--7237972
44
6.0
44
82
3
273
22
12
16
47
1.80
7238170--7238203
6
5.7
6
92
0
59
17
0
0
82
0.67
7239052--7239086
5
6.6
5
90
9
52
34
0
2
62
1.10
7239099--7239588
59
8.2
57
73
17
322
46
5
11
35
1.64
7239122--7239335
116
1.9
115
86
6
308
47
5
13
34
1.64
7239107--7239588
60
8.0
58
73
13
291
47
5
11
35
1.64
7239099--7239587
131
4.1
118
75
14
364
47
5
11
35
1.64
7239339--7239374
14
2.5
15
86
9
56
61
2
0
36
1.11
7239429--7239588
58
2.8
58
79
2
178
48
5
11
35
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7240191--7240226
8
4.4
8
89
3
54
83
0
5
11
0.80
7240191--7240226
16
2.2
16
100
0
72
83
0
5
11
0.80
7245072--7245459
44
8.9
43
76
8
286
26
14
14
43
1.84
7245067--7245397
88
3.8
88
80
2
344
26
13
15
44
1.84
7245068--7245440
88
4.3
87
78
3
343
26
14
15
43
1.85
7245636--7245666
9
3.4
9
95
0
53
87
0
3
9
0.66
7246425--7246463
16
2.4
16
87
8
53
12
2
7
76
1.09
7246426--7246472
24
2.0
24
82
0
58
14
2
6
76
1.08
7246553--7246608
24
2.3
24
82
11
62
42
5
5
46
1.49
7248733--7248820
28
3.1
27
79
12
79
46
2
1
50
1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131