genome.fa.s2.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  23  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5579371--5579525	52	3.0	51	80	13	165	47	3	16	32	1.65
5579376--5579526	53	2.9	51	81	5	169	47	3	16	32	1.63
5579756--5580127	190	2.0	186	89	2	564	26	8	23	40	1.84
5581839--5581883	22	2.0	23	86	4	65	51	6	8	33	1.59
5582016--5582085	31	2.2	32	87	2	97	55	1	1	41	1.17
5582016--5582091	15	4.9	15	78	13	82	53	1	1	43	1.17
5582158--5582227	16	4.1	16	73	14	52	47	0	0	52	1.00
5582157--5582232	15	4.7	15	74	18	55	48	0	0	51	1.00
5582197--5582266	25	2.8	24	87	12	97	50	0	0	50	1.00
5582197--5582266	9	8.2	9	72	20	53	50	0	0	50	1.00
5582383--5582417	14	2.5	14	100	0	70	37	14	0	48	1.44
5588585--5588628	22	1.9	24	86	9	65	52	0	0	47	1.00
5589810--5589857	10	4.5	10	75	14	51	54	2	0	43	1.12
5589913--5589948	17	2.1	17	94	0	63	33	0	0	66	0.92
5590481--5590591	30	3.8	30	74	9	77	44	0	2	52	1.21
5591150--5591204	22	2.4	22	82	11	58	41	0	0	58	0.98
5592300--5592333	11	3.0	11	87	8	50	29	0	2	67	1.05
5592718--5592747	15	2.0	15	93	0	51	40	3	0	56	1.16
5593934--5593964	15	2.1	15	93	0	53	35	16	0	48	1.46
5599153--5599182	13	2.2	14	94	5	53	60	0	0	40	0.97
5625056--5625109	25	2.2	25	86	0	72	44	25	5	24	1.75
5625028--5625109	12	6.7	12	67	10	58	42	26	8	21	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5625067--5625122	25	2.3	24	87	3	76	42	26	5	25	1.76
5625088--5625179	12	7.3	12	72	9	67	38	26	6	29	1.81
5625112--5625194	40	2.1	40	95	0	148	39	22	6	31	1.78
5625205--5625259	25	2.2	24	77	3	56	40	25	7	27	1.82
5625244--5625457	28	7.6	28	71	17	104	48	24	3	23	1.67
5625197--5625457	142	1.8	143	85	5	368	47	24	4	24	1.70
5625333--5625394	25	2.5	25	92	2	99	48	27	3	20	1.65
5625821--5625865	21	2.1	21	95	0	81	26	0	15	57	1.38
5626384--5627032	244	2.7	239	82	7	754	41	12	10	35	1.76
5629430--5629488	3	19.3	3	85	3	73	28	3	1	66	1.18
5629487--5629518	3	10.7	3	93	0	55	34	28	0	37	1.57
5629437--5629524	9	9.7	9	81	7	70	30	12	0	56	1.36
5629658--5629790	65	2.0	65	100	0	266	30	16	19	33	1.94
5629757--5630003	124	2.0	124	100	0	494	43	14	12	28	1.83
5631486--5631510	11	2.3	11	100	0	50	12	24	8	56	1.62
5641771--5642278	119	4.3	119	83	4	587	17	21	16	44	1.87
5642575--5642640	3	22.7	3	84	3	82	28	3	1	66	1.15
5642588--5642654	22	3.1	22	74	8	66	23	4	0	71	1.04
5642582--5642647	9	7.5	10	79	19	60	27	4	0	68	1.09
5643469--5643506	20	1.9	20	94	0	67	31	31	18	18	1.95
5643534--5643589	10	5.5	10	75	10	51	10	7	0	82	0.85
5643534--5643572	17	2.4	16	83	8	51	7	5	0	87	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5644296--5644339	21	2.1	21	87	8	63	31	9	20	38	1.84
5647754--5648010	140	1.8	140	83	1	336	31	10	15	43	1.80
5650107--5650167	32	1.9	32	83	3	79	40	21	6	31	1.78
5653451--5653501	19	2.8	19	82	8	70	25	5	0	68	1.12
5653812--5653844	3	11.0	3	100	0	66	33	0	0	66	0.92
5654064--5654402	159	2.1	158	83	5	405	38	12	11	36	1.80
5655982--5656041	16	3.7	16	81	18	79	35	1	0	63	1.05
5656031--5656074	19	2.3	19	80	7	54	50	0	0	50	1.00
5659067--5659113	18	2.5	19	79	6	51	34	2	2	61	1.20
5659066--5659113	19	2.5	20	80	10	55	33	2	2	62	1.18
5661215--5661239	3	8.3	3	100	0	50	68	0	32	0	0.90
5666809--5666842	15	2.3	15	90	5	52	67	2	0	29	1.05
5669654--5669692	20	1.9	20	84	5	51	48	0	0	51	1.00
5669645--5669697	27	2.0	27	85	7	72	45	0	0	54	0.99
5670489--5670547	24	2.4	24	86	8	75	28	3	0	67	1.06
5670522--5670554	16	2.0	17	88	5	50	36	3	0	60	1.12
5670490--5670562	24	3.0	23	79	13	69	35	4	0	60	1.16
5681175--5681216	20	2.1	20	82	8	50	14	4	26	54	1.59
5684245--5684314	22	3.2	22	65	25	58	17	15	20	47	1.83
5700143--5700184	20	2.1	20	82	8	50	14	4	26	54	1.59
5703212--5703281	22	3.2	22	65	25	58	17	15	20	47	1.83
5703195--5703282	43	2.0	44	91	2	142	19	14	18	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5706022--5706056	2	17.5	2	100	0	70	48	51	0	0	1.00
5709411--5709468	29	2.0	29	96	0	107	51	15	3	29	1.60
5716861--5717380	255	2.0	257	93	2	884	39	19	17	24	1.92
5717578--5717607	15	2.1	15	93	6	53	40	0	13	46	1.43
5717624--5717661	19	2.0	19	89	0	58	57	10	7	23	1.58
5717507--5717806	148	2.0	146	91	1	492	49	7	6	36	1.58
5718300--5718343	9	4.9	9	85	0	61	50	4	9	36	1.55
5718286--5718347	27	2.3	25	79	15	79	54	3	6	35	1.42
5718296--5718348	18	2.9	18	88	0	70	50	3	7	37	1.49
5725802--5725845	18	2.3	20	80	7	56	50	0	0	50	1.00
5730992--5731020	2	14.5	2	100	0	58	48	0	0	51	1.00
5739782--5739823	19	2.2	20	82	4	50	30	0	2	66	1.04
5752510--5752577	30	2.2	31	84	7	84	36	1	2	58	1.22
5753363--5753410	26	2.0	25	88	12	73	35	2	2	60	1.20
5753599--5753676	29	2.6	29	81	4	93	48	7	1	42	1.40
5775710--5775766	29	2.0	29	86	6	80	57	3	1	36	1.26
5779417--5779484	30	2.3	30	82	2	84	55	1	0	42	1.08
5780959--5781008	12	4.2	11	80	14	55	74	4	4	18	1.14
5782021--5782045	13	1.9	13	100	0	50	76	0	0	24	0.80
5782446--5782494	18	2.7	18	90	0	62	30	2	14	53	1.52
5782454--5782494	18	2.3	18	95	0	73	31	0	14	53	1.41
5782457--5782499	18	2.5	17	88	7	61	30	0	16	53	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5782568--5782624	17	3.5	17	76	4	55	43	7	15	33	1.74
5782704--5782750	23	2.1	21	84	7	58	44	14	6	34	1.71
5783045--5783087	23	1.9	23	85	4	61	51	13	6	27	1.67
5784289--5784337	7	6.7	7	84	11	55	10	4	0	85	0.71
5784292--5784343	24	2.1	26	92	7	90	11	7	0	80	0.89
5784291--5784338	17	2.9	17	87	6	64	10	4	0	85	0.73
5784292--5784338	8	5.9	8	83	16	62	10	4	0	85	0.74
5795085--5795128	15	2.7	15	82	10	52	31	4	25	38	1.76
5795085--5795190	18	6.1	18	69	12	60	28	4	29	37	1.77
5797691--5797775	42	2.0	43	88	6	129	16	2	34	47	1.60
5797691--5797761	21	3.4	21	70	14	74	16	2	32	47	1.61
5797709--5797791	29	2.9	29	76	15	100	14	3	34	46	1.62
5797706--5797789	14	5.9	14	74	13	57	15	3	33	47	1.63
5797706--5797798	29	3.2	29	68	18	86	16	3	33	47	1.62
5799299--5799353	24	2.2	24	78	9	58	41	0	1	56	1.10
5799310--5799357	18	2.8	17	78	6	60	37	0	2	60	1.09
5799712--5800102	105	3.7	105	80	5	436	49	9	19	20	1.77
5799710--5799859	36	4.2	37	71	14	120	48	10	22	18	1.78
5800031--5801122	108	10.1	108	79	5	900	46	14	19	19	1.83
5800472--5800732	37	7.3	36	69	13	126	46	14	20	19	1.84
5800098--5801142	216	4.8	216	80	3	1001	46	13	19	20	1.83
5800153--5801143	323	3.0	323	82	3	1184	46	13	19	20	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5809540--5809625	35	2.4	36	82	9	95	51	3	1	44	1.26
5809929--5809979	16	3.4	15	79	15	61	47	0	0	52	1.00
5810209--5810270	30	2.0	30	84	9	81	46	1	3	48	1.28
5810942--5811128	62	3.0	62	79	7	173	39	6	7	47	1.58
5811009--5811159	62	2.4	61	81	4	151	37	5	9	47	1.60
5811295--5811415	63	1.9	64	81	9	151	36	4	10	48	1.57
5812263--5812297	15	2.4	14	86	9	52	51	5	0	42	1.25
5812306--5812387	28	3.0	28	82	7	98	47	0	0	52	1.00
5812749--5812803	18	3.0	18	75	2	56	32	9	5	52	1.56
5812754--5812797	9	4.9	9	82	0	52	36	11	2	50	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131