genome.fa.s2.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  94  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16956748--16956814	18	3.8	17	74	5	62	28	16	13	41	1.86
16956735--16956902	91	1.9	90	81	8	207	31	18	13	36	1.89
16956876--16956910	17	2.1	17	89	5	54	34	11	5	48	1.63
16957338--16957384	14	3.1	15	81	9	60	23	2	8	65	1.31
16958394--16958452	5	11.8	5	77	13	59	13	3	3	79	0.98
16958392--16958457	10	6.8	9	77	13	60	13	3	4	78	1.02
16958394--16958452	15	3.9	15	80	14	68	13	3	3	79	0.98
16958588--16958656	23	3.0	23	91	0	102	36	7	5	50	1.54
16958540--16958632	44	2.2	41	79	12	100	30	4	9	55	1.51
16958995--16959027	17	1.9	17	88	11	50	51	0	3	45	1.16
16961405--16961476	30	2.5	30	86	6	96	27	23	11	37	1.89
16961518--16961572	28	2.0	28	85	0	74	20	16	23	40	1.91
16961999--16962042	23	1.9	22	86	9	61	81	11	2	4	0.92
16966280--16966356	30	2.5	30	83	12	86	11	3	6	77	1.08
16966283--16966345	25	2.5	25	86	0	81	11	3	6	79	1.03
16966301--16966353	25	2.1	25	82	6	63	11	5	5	77	1.11
16966425--16966489	21	3.0	21	82	8	69	29	4	10	55	1.54
16966426--16966501	23	3.4	23	84	10	88	31	5	9	53	1.55
16966614--16966646	13	2.4	14	85	5	50	48	0	0	51	1.00
16966615--16966646	14	2.4	14	94	5	57	46	0	0	53	1.00
16970950--16971014	7	8.9	7	73	21	53	80	1	15	3	0.92
16970951--16971030	21	3.6	21	81	8	79	80	1	15	3	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16970976--16971030	6	8.8	6	75	18	51	81	0	14	3	0.82
16970950--16971030	22	3.7	22	74	14	69	79	1	16	3	0.95
16970978--16971022	14	3.2	14	81	9	56	80	0	15	4	0.87
16972368--16972438	22	3.1	22	76	7	79	35	7	12	45	1.70
16972356--16972476	46	2.6	46	79	7	147	33	9	14	42	1.76
16972357--16972521	46	3.6	45	73	6	136	34	7	13	44	1.72
16972752--16972825	33	2.2	33	87	0	103	32	14	8	44	1.75
16972763--16972820	17	3.5	17	80	4	73	29	18	6	44	1.76
16972756--16972825	17	4.2	17	74	5	72	30	15	8	45	1.76
16972872--16972939	35	1.9	36	85	8	95	32	16	13	38	1.87
16972910--16972971	18	3.4	18	71	8	63	27	14	14	43	1.84
16974690--16974786	21	4.4	23	72	16	80	35	3	6	55	1.40
16982997--16983039	20	2.3	19	84	8	52	18	2	32	46	1.62
16985196--16985234	20	2.0	20	84	0	51	25	15	10	48	1.76
16991939--16992070	48	2.7	47	81	8	140	11	3	42	42	1.59
16992005--16992071	18	3.6	18	74	8	55	8	1	43	46	1.44
17014170--17014226	23	2.5	22	77	8	60	31	0	14	54	1.40
17014292--17014364	16	4.6	16	74	16	71	71	0	4	24	1.04
17014929--17015040	50	2.2	52	79	6	122	36	20	6	36	1.78
17015283--17015514	120	1.9	120	83	1	295	42	15	23	18	1.89
17015346--17015563	120	1.8	120	84	2	303	43	15	22	18	1.87
17015320--17015593	120	2.3	120	78	3	293	43	16	22	17	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17015925--17015968	17	2.6	17	81	0	52	50	13	18	18	1.79
17015957--17016285	69	4.8	68	79	5	304	38	12	19	29	1.89
17015943--17016285	138	2.5	137	80	6	395	38	12	19	29	1.88
17016488--17016512	8	3.1	8	100	0	50	40	12	24	24	1.88
17017232--17017324	1	93.0	1	71	0	51	6	7	2	83	0.87
17017220--17017269	26	2.0	26	84	4	66	6	12	0	82	0.85
17017223--17017259	16	2.3	16	95	0	65	5	13	0	81	0.86
17017248--17017290	9	4.4	9	91	8	59	11	2	0	86	0.67
17017248--17017291	10	4.4	10	83	11	63	11	2	0	86	0.66
17017253--17017326	32	2.4	31	82	11	80	5	8	4	82	0.94
17017232--17017324	18	5.1	17	76	14	71	6	7	2	83	0.87
17017232--17017324	19	4.9	18	75	8	71	6	7	2	83	0.87
17017595--17017722	58	2.2	57	84	6	161	12	15	10	61	1.56
17021961--17022105	52	2.8	51	80	6	150	36	19	8	35	1.82
17023476--17025578	161	13.2	160	78	7	1813	32	11	15	41	1.82
17024875--17025150	148	1.9	148	83	3	367	29	12	16	41	1.85
17023476--17025599	319	6.7	320	79	7	1848	32	10	15	41	1.82
17029880--17029946	31	2.2	31	88	0	98	52	20	10	16	1.73
17030297--17030340	6	7.2	6	79	5	52	75	4	2	18	1.09
17030297--17030343	18	2.5	19	89	6	78	74	4	2	19	1.09
17030915--17030998	44	2.0	42	81	9	98	39	17	9	33	1.82
17031106--17031303	21	9.0	21	78	10	191	38	16	8	36	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17031106--17031303	43	4.5	43	77	13	179	38	16	8	36	1.79
17031138--17031304	46	3.7	47	81	8	220	38	14	9	36	1.79
17031106--17031304	68	3.0	64	81	10	195	38	16	9	36	1.80
17031106--17031303	89	2.2	90	90	3	312	38	16	8	36	1.79
17031797--17031980	79	2.3	79	76	3	181	33	23	9	33	1.88
17032611--17032656	10	4.3	11	81	13	60	8	10	0	80	0.91
17032592--17032676	30	2.8	29	80	8	89	7	17	0	75	1.02
17032602--17032676	20	3.7	19	76	15	53	8	16	0	76	1.02
17032620--17032666	20	2.5	18	86	10	67	6	14	0	78	0.93
17032614--17032655	11	3.9	11	84	15	52	9	11	0	78	0.96
17036891--17036938	15	3.5	15	75	21	59	47	14	0	37	1.44
17036904--17036949	11	3.8	11	79	20	56	50	8	0	41	1.33
17036891--17036949	26	2.3	26	96	0	109	49	11	0	38	1.40
17036993--17037032	16	2.5	16	84	11	55	25	2	2	70	1.13
17042259--17042315	26	2.2	26	90	0	87	43	17	7	31	1.76
17042657--17042685	10	2.9	10	100	0	58	10	0	6	82	0.83
17042795--17042839	14	2.9	16	80	16	58	51	0	0	48	1.00
17042996--17043067	11	6.5	11	68	17	51	44	1	1	52	1.18
17043000--17043065	15	4.4	16	74	12	68	45	1	1	51	1.19
17043007--17043085	21	3.6	22	79	20	87	43	1	2	53	1.22
17043186--17043215	15	2.0	15	93	0	51	0	6	3	90	0.56
17048937--17048980	21	2.1	21	95	0	79	34	22	13	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17050710--17050763	4	13.5	4	78	0	54	25	29	1	42	1.66
17050728--17050763	8	4.5	8	92	0	63	25	33	0	41	1.55
17053567--17053628	22	2.8	22	79	11	74	77	0	20	1	0.85
17053570--17053628	21	3.1	18	78	19	66	76	0	22	1	0.88
17054490--17054700	34	6.2	34	80	11	191	37	19	17	25	1.93
17055309--17055449	33	4.2	33	75	9	115	34	19	17	29	1.95
17055337--17055431	35	2.7	35	77	7	113	34	18	16	29	1.94
17055324--17055456	69	2.0	65	82	5	158	35	18	15	30	1.93
17055657--17055703	24	2.0	24	91	0	76	27	21	17	34	1.95
17056060--17056287	33	6.9	33	76	9	153	35	21	13	29	1.91
17056063--17056247	66	2.8	66	78	7	169	37	20	13	28	1.90
17056100--17056350	101	2.5	100	84	4	310	35	21	14	28	1.92
17056452--17056927	107	4.4	108	78	6	414	18	17	14	49	1.80
17056404--17056581	35	5.0	35	70	8	108	17	16	14	51	1.77
17056485--17056854	72	5.2	70	72	12	180	19	17	14	48	1.81
17056487--17056894	35	11.5	35	71	10	229	18	17	14	48	1.82
17056477--17056926	214	2.1	214	78	5	473	18	17	14	49	1.79
17056957--17057005	22	2.3	21	89	10	73	81	10	2	6	0.94
17058057--17058121	31	2.2	31	81	13	82	72	10	15	1	1.19
17059391--17059421	16	1.9	16	93	0	53	32	0	9	58	1.31
17061681--17062087	145	2.8	143	75	10	348	30	14	16	39	1.88
17063553--17063586	6	5.7	6	85	0	50	32	47	17	2	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17063677--17063930	12	20.3	12	67	21	73	47	37	2	12	1.55
17063695--17064005	18	16.1	18	65	19	80	46	36	2	13	1.59
17063669--17063882	6	34.3	6	73	19	97	45	39	1	13	1.55
17063728--17063819	43	2.1	43	82	8	105	44	38	2	15	1.58
17063737--17063870	25	5.3	25	74	17	93	44	38	2	14	1.60
17063976--17064023	25	1.9	25	91	0	78	50	27	4	18	1.65
17064025--17064068	19	2.3	18	81	11	52	43	31	4	20	1.72
17066587--17066707	63	1.9	65	83	6	158	37	11	8	42	1.71
17069487--17069513	1	27.0	1	100	0	54	0	0	0	100	0.00
17071982--17072011	14	2.1	14	93	0	51	6	30	6	56	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131