genome.fa.s2.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  88  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15862654--15863427	36	21.8	36	66	17	185	16	21	15	46	1.83
15862920--15862976	30	1.9	30	92	7	98	15	21	19	43	1.87
15862941--15863084	35	4.1	36	75	12	136	17	22	13	46	1.82
15863325--15863481	36	4.4	35	74	4	118	14	15	17	52	1.74
15863324--15863476	71	2.1	72	78	5	159	15	16	17	50	1.78
15863567--15863835	36	7.5	36	71	9	147	19	24	10	45	1.82
15863567--15863834	108	2.5	108	80	7	267	19	24	10	45	1.82
15863576--15863835	72	3.6	70	78	9	229	20	23	10	45	1.81
15863927--15864011	36	2.4	36	82	7	95	14	23	14	48	1.80
15863988--15864055	35	1.9	35	82	5	84	20	19	10	50	1.76
15864145--15864261	36	3.3	36	78	7	130	16	16	13	53	1.73
15864088--15864368	143	2.0	143	80	6	320	17	18	15	48	1.81
15864140--15864301	71	2.3	71	77	7	157	19	18	12	49	1.79
15864853--15864959	34	3.1	34	74	6	99	16	24	14	44	1.84
15865085--15865217	36	3.7	36	73	9	119	14	15	14	55	1.69
15865156--15865360	36	5.7	35	73	6	117	16	16	14	52	1.75
15865377--15865433	9	7.1	8	77	18	57	82	15	1	0	0.75
15865377--15865418	15	2.9	14	89	7	57	80	19	0	0	0.70
15865379--15865431	18	2.9	18	81	15	65	81	16	1	0	0.79
15865397--15865434	14	2.7	14	88	8	51	81	13	5	0	0.85
15865886--15866171	144	2.0	142	87	5	407	29	13	13	43	1.83
15868895--15868934	21	1.9	21	85	10	55	40	17	7	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15870255--15870298	11	4.2	10	82	8	52	2	11	2	84	0.81
15870268--15870299	12	2.8	12	95	4	57	0	9	0	90	0.45
15870146--15870731	293	2.0	298	84	6	773	25	17	12	44	1.84
15870534--15870594	1	61.0	1	76	0	59	0	9	1	88	0.58
15878917--15878989	25	2.9	25	74	8	67	8	34	8	49	1.62
15880182--15880382	37	5.4	37	77	4	165	35	19	15	29	1.93
15880399--15880423	10	2.5	10	100	0	50	8	0	0	92	0.40
15880625--15880910	105	2.7	104	83	4	349	34	12	16	35	1.87
15881008--15881085	41	1.9	41	84	5	104	34	17	15	32	1.92
15881517--15881563	22	2.1	22	88	4	67	2	4	14	78	0.99
15882415--15882453	15	2.6	15	95	0	69	23	33	0	43	1.54
15882627--15882657	15	2.1	15	94	5	55	61	12	6	19	1.53
15882928--15883080	75	2.0	75	97	0	288	34	11	11	42	1.77
15883030--15883183	77	2.0	77	88	2	229	38	15	6	39	1.73
15883455--15883599	64	2.3	62	81	7	159	40	12	16	31	1.86
15885075--15885105	10	3.1	10	100	0	62	61	9	9	19	1.54
15893044--15893185	63	2.3	64	79	13	163	31	14	13	40	1.85
15894788--15895718	131	7.2	129	72	9	509	35	7	18	38	1.80
15894772--15895645	260	3.4	261	78	7	694	35	8	17	38	1.80
15896293--15896593	130	2.3	128	79	2	298	36	9	13	39	1.78
15896498--15897117	129	4.8	128	74	11	358	38	8	14	37	1.77
15897779--15898216	130	3.4	126	75	10	364	37	8	15	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15898311--15899402	129	8.5	127	72	9	486	38	8	15	38	1.77
15898884--15899121	130	1.8	130	79	6	277	35	6	16	41	1.75
15898697--15899250	259	2.1	258	78	4	571	38	7	15	38	1.76
15899521--15900122	130	4.6	129	79	6	566	35	7	17	40	1.77
15899981--15900370	199	2.0	197	85	4	525	36	8	15	38	1.79
15900202--15901649	130	11.1	128	73	10	866	36	8	16	38	1.79
15901661--15902644	130	7.7	129	75	6	721	36	8	18	37	1.80
15900947--15902405	756	1.9	759	78	5	1576	35	8	17	38	1.80
15903673--15905876	130	17.2	129	73	9	1061	35	7	17	39	1.79
15903648--15905101	388	3.8	381	76	9	1070	35	8	17	38	1.80
15904145--15905776	255	6.4	249	74	9	760	35	8	17	38	1.80
15906154--15906813	130	5.1	130	74	10	478	35	8	15	40	1.78
15906891--15907402	129	4.0	131	76	7	447	36	8	16	39	1.78
15908577--15908670	19	5.1	19	71	16	63	24	12	21	41	1.88
15908665--15908703	19	2.1	18	90	4	60	12	20	20	46	1.83
15908943--15908995	20	2.6	21	80	14	67	26	7	0	66	1.18
15910239--15910308	35	2.0	35	86	5	97	24	20	15	40	1.91
15910246--15910347	37	2.8	37	83	5	120	27	16	17	38	1.91
15910259--15910378	36	3.3	36	80	3	125	26	16	17	39	1.91
15910879--15910912	14	2.4	14	95	0	59	41	0	0	58	0.98
15910873--15910929	21	2.8	19	75	15	60	33	1	0	64	1.04
15911206--15911301	1	96.0	1	68	0	57	0	3	12	84	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15911205--15911302	10	9.5	11	79	12	77	0	4	13	82	0.80
15911216--15911302	5	16.8	5	87	8	88	0	2	14	82	0.76
15911405--15911666	35	7.3	34	68	14	123	50	16	16	16	1.79
15916711--15916741	15	2.1	15	100	0	62	38	29	12	19	1.89
15918235--15918265	15	2.1	15	93	0	53	35	9	0	54	1.33
15920381--15920445	34	1.9	34	100	0	130	33	6	23	36	1.80
15920411--15921002	299	2.0	292	90	2	934	33	21	13	32	1.91
15922647--15922684	15	2.5	15	84	16	51	21	0	2	76	0.91
15922902--15923020	19	6.4	19	68	14	61	20	12	26	40	1.88
15923247--15923280	13	2.5	14	85	9	52	20	2	5	70	1.21
15923429--15923465	16	2.3	17	86	9	51	70	10	0	18	1.16
15924544--15924647	35	2.9	35	84	5	136	25	15	18	41	1.89
15925120--15925173	27	2.0	27	85	0	72	29	0	0	70	0.88
15925146--15925199	18	2.9	18	73	13	56	29	0	0	70	0.88
15925125--15925195	20	3.9	20	72	22	57	33	0	0	66	0.92
15925138--15925195	27	2.1	27	84	6	73	32	0	0	67	0.91
15925384--15925944	129	4.4	128	78	10	472	34	8	18	38	1.81
15925458--15925941	257	1.9	260	82	6	615	34	7	18	39	1.79
15925844--15926053	109	1.9	110	87	0	305	34	7	17	40	1.78
15925714--15926146	239	1.8	239	83	6	583	35	7	17	39	1.78
15925955--15927602	130	12.8	129	75	6	1022	35	9	17	38	1.81
15925940--15929173	260	12.6	254	70	12	1372	35	8	16	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15927790--15927913	52	2.4	53	80	4	144	41	3	16	38	1.65
15927664--15928036	182	2.0	183	85	4	502	37	7	16	38	1.76
15927849--15932011	130	32.7	127	71	13	1314	36	7	17	38	1.78
15928210--15928819	250	2.4	247	77	9	559	35	8	17	38	1.80
15929063--15929277	104	2.1	104	82	5	256	32	8	17	41	1.80
15928677--15929581	494	1.8	489	80	6	1076	36	6	18	38	1.78
15929166--15929860	129	5.4	130	75	7	380	35	6	18	38	1.78
15929166--15932011	130	22.3	128	71	10	1383	36	7	18	38	1.78
15931523--15932010	243	2.0	243	82	5	594	37	5	14	41	1.69
15936964--15937390	130	3.3	127	72	9	332	37	8	15	37	1.79
15938513--15938639	19	6.6	19	79	1	74	22	16	22	38	1.93
15938591--15938672	19	4.3	19	83	6	103	24	18	15	41	1.89
15942575--15942656	38	2.3	37	85	8	107	40	13	9	36	1.78
15959053--15959144	45	2.0	45	85	0	121	25	19	31	23	1.98
15967174--15967314	45	3.1	44	72	8	113	21	22	29	26	1.99
15969090--15969119	15	2.0	15	93	0	51	23	6	36	33	1.81
15984707--15984765	31	1.9	31	85	0	82	28	16	30	23	1.97
15987464--15987502	21	1.9	21	94	5	71	38	12	25	23	1.90
15996980--15997011	7	4.6	7	100	0	64	0	12	62	25	1.30
16010427--16010530	45	2.3	45	80	3	111	22	19	32	25	1.97
16029844--16029889	24	1.9	24	90	0	74	17	19	21	41	1.90
16064266--16064321	25	2.2	26	87	6	80	46	19	3	30	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16064318--16064431	61	1.9	61	84	10	155	35	18	11	34	1.87
16064649--16064806	63	2.5	62	77	5	167	44	16	12	26	1.83
16065427--16065460	15	2.2	16	89	5	52	44	0	5	50	1.26
16078600--16078831	116	2.0	116	95	0	419	31	14	24	28	1.95
16096200--16096416	118	1.8	118	82	2	274	26	23	25	24	2.00
16143007--16143068	31	2.0	31	96	0	115	24	16	16	43	1.87
16148936--16148960	13	1.9	13	100	0	50	64	4	8	24	1.38
16152792--16153020	114	2.0	114	96	0	422	28	17	20	34	1.95
16161552--16161689	66	2.1	66	97	0	258	18	19	25	36	1.94
16164015--16164044	15	2.1	14	93	6	51	30	10	0	60	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131