genome.fa.s2.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  58  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11751681--11751720	19	2.0	19	85	9	53	30	0	17	52	1.45
11751818--11751847	5	5.8	5	96	4	51	60	0	0	40	0.97
11751838--11751919	27	3.0	26	71	16	76	41	14	7	36	1.74
11752478--11752541	25	2.6	25	97	0	119	31	10	0	57	1.33
11753189--11753224	17	2.1	18	89	5	56	36	11	13	38	1.81
11753359--11753488	64	2.0	64	100	0	260	28	12	21	37	1.90
11754229--11754275	19	2.4	20	86	13	71	23	0	29	46	1.52
11760623--11760657	17	2.1	17	94	0	61	14	2	34	48	1.58
11762917--11762967	9	5.7	9	75	15	52	72	1	11	13	1.20
11762929--11762972	17	2.7	16	82	6	61	75	2	11	11	1.15
11767547--11767634	7	12.3	7	69	25	51	69	1	4	25	1.14
11767543--11767623	30	2.7	30	77	9	85	70	0	4	24	1.07
11767544--11767624	20	4.2	20	72	20	64	70	0	4	24	1.07
11769406--11769436	14	2.1	15	94	5	55	77	0	3	19	0.90
11769405--11769439	14	2.5	13	86	13	52	74	0	2	22	0.95
11769432--11769463	13	2.4	14	89	10	57	59	0	0	40	0.97
11769588--11769656	33	2.1	33	89	5	104	52	24	2	20	1.60
11769586--11769707	46	2.6	45	78	7	138	50	22	5	21	1.69
11769621--11769722	13	8.3	13	71	16	74	50	22	7	18	1.72
11769621--11769670	26	1.9	26	91	0	82	54	24	4	18	1.61
11769634--11769703	33	2.1	33	89	0	104	51	24	5	18	1.68
11769614--11769689	20	3.5	20	77	19	80	51	23	5	19	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11772971--11773015	19	2.2	21	80	11	58	24	0	11	64	1.26
11776057--11776120	20	3.3	19	77	16	60	75	1	18	4	1.06
11776074--11776108	16	2.2	16	90	10	54	74	0	22	2	0.95
11777149--11777262	22	5.2	22	83	2	124	28	18	21	30	1.97
11777140--11777262	44	2.8	44	82	4	142	30	19	21	29	1.97
11777490--11777872	68	5.7	68	76	9	247	33	16	16	33	1.92
11777498--11777763	100	2.7	100	76	5	252	34	15	16	34	1.90
11777498--11777937	33	13.3	32	74	11	210	33	17	16	32	1.92
11777544--11777930	133	2.9	132	79	6	370	33	17	16	32	1.93
11777701--11777975	97	2.8	99	81	5	274	33	19	16	30	1.94
11777677--11777921	132	1.8	133	84	2	332	31	20	17	30	1.95
11777687--11777975	32	8.9	32	77	10	230	33	19	16	30	1.94
11777931--11778170	61	3.9	62	75	8	170	33	20	15	30	1.93
11777931--11778170	123	2.0	122	80	7	272	33	20	15	30	1.93
11778050--11778378	95	3.4	95	81	4	358	33	20	15	31	1.93
11777685--11778378	32	21.7	32	70	14	226	33	20	15	30	1.94
11778083--11778459	66	5.8	65	73	16	245	33	18	16	31	1.94
11777495--11778460	33	29.9	33	68	14	156	33	18	16	31	1.93
11780229--11780280	17	3.1	17	94	0	86	55	13	30	0	1.38
11780978--11781021	14	3.1	14	84	12	63	75	0	2	22	0.92
11781232--11781266	12	2.8	13	82	8	54	54	20	5	20	1.64
11781246--11781333	46	1.9	45	84	6	115	44	22	11	21	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11781519--11781567	14	3.6	14	78	13	57	75	0	2	22	0.90
11783628--11783660	14	2.4	14	90	5	50	15	3	3	78	0.99
11789740--11789769	6	5.0	6	100	0	60	33	16	0	50	1.46
11789729--11789775	18	2.5	19	79	3	60	25	14	0	59	1.36
11789767--11789819	9	5.6	9	77	18	54	13	3	1	81	0.92
11789768--11789837	17	4.2	17	78	7	63	12	7	1	78	1.01
11789958--11790026	20	3.5	20	86	2	95	30	7	13	49	1.68
11794128--11794209	31	2.7	29	75	15	74	76	4	15	2	1.06
11795237--11795446	45	4.6	45	80	4	208	36	7	13	42	1.73
11795583--11795664	23	3.7	23	67	15	64	36	9	8	45	1.68
11795570--11795683	44	2.6	44	77	13	110	37	10	12	39	1.77
11795772--11796038	18	15.2	17	70	8	124	26	16	17	38	1.91
11795976--11796033	17	3.4	17	76	4	53	31	10	17	41	1.83
11795959--11796049	35	2.6	34	77	8	94	27	15	16	40	1.88
11796001--11796093	44	2.1	44	82	4	107	31	12	11	44	1.79
11796059--11796170	36	3.1	36	76	1	109	31	11	10	46	1.74
11797548--11797598	12	4.2	12	78	14	50	23	9	0	66	1.21
11797560--11797612	25	2.1	26	86	10	74	18	11	0	69	1.17
11797732--11797769	19	2.0	19	94	0	67	34	5	7	52	1.53
11797739--11797842	19	5.4	19	81	4	93	34	7	8	49	1.62
11797770--11797819	20	2.5	20	93	0	82	36	8	10	46	1.67
11797748--11797842	39	2.4	38	81	5	109	34	7	8	49	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11798763--11798804	20	2.1	20	86	0	57	33	19	16	30	1.94
11799165--11799258	29	3.0	30	82	14	102	32	20	17	29	1.95
11802295--11802336	18	2.4	18	84	11	52	28	2	2	66	1.16
11802881--11802944	31	2.1	30	85	8	85	62	6	0	31	1.20
11802924--11803101	9	18.8	9	68	14	90	48	6	2	43	1.40
11802923--11803002	29	2.8	28	77	7	90	46	7	0	46	1.31
11803039--11803100	19	3.1	20	77	13	65	50	4	3	41	1.40
11803046--11803107	20	3.2	19	82	8	72	54	3	3	38	1.32
11803034--11803107	38	1.9	39	83	8	98	51	6	2	39	1.43
11803033--11803115	38	2.2	38	78	6	87	53	7	2	37	1.42
11803652--11803766	10	11.1	10	71	10	70	35	1	6	56	1.34
11803621--11803717	40	2.5	39	78	8	106	38	2	5	54	1.34
11803632--11803707	30	2.5	30	77	10	75	40	2	5	51	1.38
11803709--11803758	22	2.3	21	80	10	55	30	0	6	64	1.18
11803816--11803901	20	4.4	19	76	12	77	36	1	10	52	1.44
11803838--11803901	19	3.5	17	76	14	56	37	0	9	53	1.34
11803861--11803902	18	2.3	19	83	4	59	45	0	7	47	1.30
11803918--11803967	16	3.2	16	74	5	57	40	0	0	60	0.97
11804105--11804146	22	1.9	22	90	0	66	66	0	0	33	0.92
11807970--11808010	3	14.0	3	94	5	75	34	0	0	65	0.93
11808114--11808141	3	9.3	3	100	0	56	35	0	0	64	0.94
11816129--11816171	13	3.4	13	78	18	54	79	4	9	6	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11816309--11816335	14	1.9	14	100	0	54	7	14	7	70	1.32
11816946--11816984	8	4.9	8	80	0	51	12	5	0	82	0.83
11823648--11823732	3	28.3	3	97	0	161	31	0	1	67	0.99
11828836--11828869	12	2.9	11	87	12	50	20	0	2	76	0.92
11829943--11829995	19	2.8	19	82	5	63	24	0	5	69	1.09
11831239--11831555	163	1.9	165	96	1	584	42	8	12	36	1.73
11833204--11833275	33	2.2	33	87	5	110	29	16	11	43	1.82
11833935--11833998	24	2.5	26	82	5	78	32	3	0	64	1.10
11836610--11836861	134	1.9	134	80	3	292	30	12	18	37	1.88
11844302--11845551	356	3.5	355	88	1	1732	35	14	13	36	1.86
11847824--11847864	21	2.0	21	85	0	55	46	24	14	14	1.82
11855385--11855440	16	3.7	15	75	18	53	25	5	0	69	1.09
11857333--11857494	35	4.6	35	72	13	145	50	11	16	20	1.76
11857333--11857502	70	2.4	69	77	13	170	50	12	16	21	1.78
11857619--11857688	35	2.0	36	85	2	97	47	11	21	20	1.81
11857404--11857801	178	2.3	175	81	3	460	45	11	21	22	1.83
11859057--11859081	10	2.5	10	100	0	50	8	0	0	92	0.40
11860442--11860550	49	2.2	49	81	3	121	28	17	9	44	1.79
11861487--11861613	68	1.9	68	83	0	164	43	13	5	37	1.67
11865121--11865239	62	1.9	62	81	8	143	32	13	13	40	1.83
11865329--11865402	38	1.9	38	94	0	130	28	9	17	44	1.80
11865545--11866254	235	3.1	231	83	6	855	34	13	13	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11866214--11866362	63	2.4	63	80	6	167	33	14	14	37	1.87
11866317--11866620	151	2.0	151	99	0	599	32	13	17	36	1.89
11868806--11868863	21	2.8	21	78	7	64	39	18	22	18	1.92
11870903--11871350	63	7.0	61	78	11	429	31	14	14	38	1.87
11870904--11871335	193	2.2	191	82	8	504	32	15	14	37	1.88
11870904--11871350	127	3.5	127	80	8	489	31	14	14	38	1.87
11875366--11875646	140	2.0	140	94	0	490	32	16	20	30	1.95
11877152--11877321	65	2.7	63	78	10	166	32	17	15	34	1.91
11883844--11883918	15	4.9	15	67	13	55	24	1	25	49	1.58
11883845--11883917	8	9.5	8	70	19	57	23	1	24	50	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131