genome.fa.s2.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  52  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10727756--10728406	203	3.2	202	92	5	1048	37	21	18	22	1.94
10727756--10728406	121	5.3	121	90	7	991	37	21	18	22	1.94
10728946--10728979	12	2.8	12	90	0	59	50	17	0	32	1.47
10729661--10729730	8	8.6	8	77	13	54	7	17	0	75	1.01
10729667--10729730	34	1.9	33	90	3	101	7	18	0	73	1.07
10733541--10733999	59	7.6	58	83	11	536	33	12	8	45	1.72
10733541--10734008	187	2.6	182	87	8	643	33	12	8	46	1.71
10735098--10735156	8	6.7	9	77	14	52	69	3	0	27	1.04
10735127--10735168	9	4.7	9	88	5	50	69	7	0	23	1.13
10741449--10741513	22	3.0	22	88	0	85	35	9	9	46	1.68
10741658--10741705	26	2.0	24	84	12	62	18	12	2	66	1.33
10750458--10750496	2	19.5	2	100	0	78	51	0	0	48	1.00
10753293--10753327	18	1.9	18	88	0	52	48	8	8	34	1.64
10757366--10757447	26	3.2	26	66	30	77	58	2	18	20	1.50
10757364--10757463	50	2.0	50	100	0	200	58	4	18	20	1.55
10757364--10757448	25	3.4	25	67	19	70	58	2	17	21	1.49
10759251--10759275	12	2.1	12	100	0	50	48	0	0	52	1.00
10761300--10761435	19	7.1	19	79	1	119	19	13	22	43	1.87
10761369--10761456	20	4.5	20	76	9	92	15	14	21	47	1.82
10761304--10761463	58	2.8	58	80	4	155	19	13	21	45	1.85
10761444--10761502	12	4.9	12	81	6	66	15	8	23	52	1.70
10761440--10761516	24	3.2	25	83	3	95	14	7	20	57	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10761671--10761734	3	22.0	3	88	6	96	32	1	0	65	1.02
10763330--10763360	7	4.4	7	91	0	53	38	3	0	58	1.15
10764022--10764100	33	2.4	34	80	2	97	41	12	13	31	1.82
10765969--10766038	26	2.7	27	84	6	83	20	11	1	67	1.30
10765969--10766038	27	2.7	26	82	10	81	20	11	1	67	1.30
10766650--10766700	26	2.0	26	92	0	84	19	7	11	60	1.55
10767557--10767598	15	2.9	15	80	16	52	11	0	14	73	1.09
10768338--10768395	20	2.8	20	81	2	62	37	22	15	24	1.93
10769191--10769231	21	2.0	21	85	0	55	41	21	14	21	1.89
10770507--10770552	10	4.7	10	84	10	60	50	6	0	43	1.28
10770510--10770553	20	2.2	20	92	8	72	45	6	0	47	1.29
10771119--10771172	17	3.2	17	87	12	76	83	0	11	5	0.80
10771127--10771172	20	2.4	18	82	17	58	82	0	13	4	0.81
10771104--10771173	31	2.3	29	80	7	77	78	0	11	10	0.96
10773878--10774212	175	1.9	174	90	1	528	41	15	11	31	1.83
10779189--10779236	21	2.3	20	79	13	53	43	0	16	39	1.48
10785440--10785499	9	6.6	9	71	9	50	58	3	0	38	1.15
10785439--10785473	18	2.0	18	94	5	63	57	2	0	40	1.14
10785429--10785526	28	3.4	28	78	10	108	59	4	0	36	1.17
10786691--10786804	57	2.0	58	85	1	158	31	14	17	36	1.89
10787334--10787361	13	2.2	13	100	0	56	0	25	14	60	1.34
10787805--10787915	56	2.0	56	84	8	149	8	14	7	70	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10793378--10793424	17	2.8	16	81	12	58	23	2	4	70	1.16
10795576--10795723	72	2.1	72	90	0	233	29	15	14	41	1.86
10795603--10795739	72	1.9	72	86	3	195	31	16	13	38	1.87
10798238--10798311	39	1.9	39	83	5	98	47	4	9	39	1.55
10798622--10798681	28	2.2	28	87	3	86	53	3	1	41	1.27
10800218--10800254	19	1.9	19	88	0	56	62	2	0	35	1.10
10800321--10800373	24	2.2	24	83	9	65	52	0	3	43	1.19
10801232--10801264	16	2.1	16	88	5	50	18	0	3	78	0.87
10801806--10801858	24	2.2	24	83	9	65	35	7	9	47	1.64
10806882--10807313	63	6.9	62	72	9	206	34	12	13	39	1.83
10807135--10807313	61	2.9	61	78	9	175	32	14	12	40	1.83
10807223--10807339	62	1.9	62	82	7	148	33	12	15	38	1.85
10807851--10808020	64	2.7	64	79	8	186	36	17	8	37	1.81
10834263--10834292	10	3.1	10	95	4	53	36	0	0	63	0.95
10834265--10834294	9	3.2	9	95	4	51	36	0	0	63	0.95
10836767--10836806	20	2.1	19	86	13	55	5	17	0	77	0.94
10838465--10838508	14	3.0	14	81	12	52	15	0	6	77	0.97
10838472--10838517	15	3.0	15	84	6	56	17	0	6	76	1.00
10838456--10838516	20	3.1	19	78	17	63	16	0	6	77	0.98
10846850--10846880	2	15.5	2	100	0	62	0	51	0	48	1.00
10853084--10853160	25	3.1	25	98	0	145	33	3	11	50	1.57
10854566--10854607	22	1.9	22	95	0	75	28	11	11	47	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10856109--10856150	22	1.9	22	95	0	75	47	11	11	28	1.76
10863022--10863065	22	2.0	22	90	0	70	31	13	13	40	1.84
10863215--10863301	22	3.6	23	83	13	104	13	28	18	39	1.89
10863232--10863304	26	2.9	25	82	11	96	15	30	17	36	1.91
10869629--10869726	48	2.0	48	92	0	160	40	14	10	34	1.79
10870363--10870414	27	1.9	27	92	0	86	28	5	28	36	1.80
10870386--10870487	49	2.1	49	94	0	177	30	6	27	35	1.83
10878351--10878418	24	2.8	24	76	12	68	66	4	19	10	1.39
10885191--10885236	19	2.4	19	82	7	58	63	13	0	23	1.30
10889281--10889546	136	2.0	136	90	0	415	31	11	13	42	1.81
10892136--10892168	17	1.9	17	88	11	50	51	6	12	30	1.63
10892635--10892682	19	2.6	19	83	3	53	56	16	2	25	1.51
10898215--10898265	10	5.0	10	84	13	68	41	19	0	39	1.52
10898215--10898265	21	2.5	20	81	18	61	41	19	0	39	1.52
10907304--10907376	4	18.0	4	71	23	55	50	2	1	45	1.24
10907674--10907712	13	3.0	13	85	11	53	46	2	0	51	1.14
10907682--10907717	18	2.1	16	90	10	54	50	0	0	50	1.00
10908448--10908534	27	3.4	27	68	20	87	52	3	5	37	1.42
10908440--10908592	49	3.2	48	87	5	211	52	3	3	39	1.38
10909158--10909197	2	20.0	2	100	0	80	50	0	0	50	1.00
10909552--10909601	26	2.0	25	84	4	64	38	2	0	60	1.09
10909618--10909652	17	2.1	17	94	5	63	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10909825--10909854	2	15.0	2	100	0	60	50	0	0	50	1.00
10910382--10910424	22	2.0	21	86	4	59	9	32	0	58	1.30
10913252--10913293	12	3.7	11	81	15	50	57	0	4	38	1.20
10916204--10916279	29	2.6	29	83	8	91	48	0	5	46	1.24
10916814--10916849	7	5.4	7	90	9	58	88	0	0	11	0.50
10916817--10916849	13	2.3	15	85	15	52	87	0	0	12	0.53
10917476--10917514	18	2.0	20	85	9	55	51	2	0	46	1.14
10918251--10918387	69	1.9	70	82	8	170	27	10	11	49	1.73
10918380--10918458	40	2.0	41	87	7	117	35	10	6	48	1.62
10918420--10918611	72	2.6	73	81	4	226	36	10	7	45	1.68
10919936--10920254	161	2.0	159	87	2	460	31	10	10	48	1.70
10921310--10921360	25	2.0	25	84	7	66	1	13	3	80	0.94
10922559--10922683	66	1.9	66	83	3	162	36	10	4	48	1.59
10923022--10923168	79	1.9	79	84	5	199	42	17	12	28	1.85
10923031--10923248	79	2.8	78	80	5	190	41	16	11	31	1.83
10923224--10923434	109	1.9	108	80	4	237	38	15	14	31	1.87
10923484--10923563	33	2.5	33	80	13	94	42	18	15	23	1.88
10927113--10927138	13	2.0	13	100	0	52	15	15	7	61	1.55
10935913--10935962	24	2.1	24	88	0	73	28	14	20	38	1.91
10936179--10936219	21	1.9	21	85	5	55	0	17	0	82	0.66
10938380--10938445	22	2.9	22	82	11	62	0	22	0	77	0.77
10938400--10938437	20	2.0	20	89	5	60	0	21	0	78	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10938396--10938445	19	2.5	20	77	6	57	0	24	0	76	0.80
10938469--10938540	24	2.9	24	80	14	74	2	23	0	73	0.96
10938473--10938531	19	3.2	18	73	17	59	1	23	0	74	0.91
10939497--10939576	8	9.1	8	71	21	54	58	1	1	38	1.14
10939492--10939568	27	2.8	27	77	14	77	57	2	1	38	1.21
10940020--10940091	35	2.1	35	81	5	83	51	0	2	45	1.15
10940012--10940091	36	2.3	35	78	8	83	47	1	3	47	1.28
10940250--10940310	15	3.7	15	76	19	59	39	0	4	55	1.21
10940260--10940298	20	2.0	20	94	0	69	35	0	5	58	1.20
10940250--10940320	35	2.1	35	86	2	99	40	0	4	54	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131