genome.fa.s2.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  63  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12421226--12421278	26	2.0	26	88	0	79	26	24	20	28	1.99
12423015--12423067	26	2.0	26	89	7	81	30	24	18	26	1.98
12424756--12424808	26	2.0	26	100	0	106	26	26	20	26	1.99
12425448--12425473	4	6.5	4	100	0	52	0	73	26	0	0.84
12425654--12425704	26	2.0	26	96	0	93	25	25	19	29	1.99
12427342--12427394	26	2.0	26	92	0	88	26	22	20	30	1.98
12428232--12428282	26	2.0	26	92	0	84	27	21	21	29	1.99
12426657--12429909	886	3.6	894	86	3	4409	26	24	23	25	2.00
12430743--12430795	26	2.0	26	92	0	88	28	22	20	28	1.99
12433730--12433782	26	2.0	26	100	0	106	26	26	20	26	1.99
12434637--12434686	26	1.9	26	92	8	84	26	22	20	32	1.98
12436401--12436453	26	2.0	26	92	0	88	30	26	16	26	1.97
12435227--12437165	891	2.2	891	88	2	2812	26	25	23	24	2.00
12437434--12437487	9	5.5	10	80	14	51	29	0	7	62	1.22
12437523--12437645	22	5.9	21	73	15	69	28	1	2	67	1.13
12437521--12437574	15	3.4	17	80	19	55	35	0	3	61	1.14
12437554--12437594	3	14.7	3	80	14	52	29	0	0	70	0.87
12437530--12437594	17	3.7	17	84	13	71	32	0	1	66	1.01
12437546--12437615	17	3.9	17	81	14	70	27	0	1	71	0.94
12437534--12437642	26	4.4	25	73	16	82	27	1	1	68	1.10
12437595--12437710	30	3.5	32	77	19	107	24	6	1	67	1.25
12437605--12437702	30	3.2	29	83	11	117	24	8	1	66	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12438562--12438587	8	3.2	8	100	0	52	34	0	0	65	0.93
12438600--12438711	18	5.8	20	75	17	78	15	6	0	78	0.94
12438609--12438697	28	3.2	27	77	19	94	13	5	0	80	0.87
12438609--12438688	9	8.6	9	81	14	83	13	5	0	81	0.85
12438626--12438707	24	3.6	23	76	18	82	13	4	0	81	0.84
12438620--12438712	33	2.9	32	82	6	107	13	6	0	79	0.91
12438626--12438700	9	8.9	8	82	10	80	13	4	0	82	0.80
12438622--12438711	12	7.2	13	72	21	59	13	5	0	81	0.86
12438725--12439070	59	5.9	58	81	9	432	45	7	13	33	1.71
12442969--12443042	19	3.8	19	81	13	80	77	0	18	4	0.93
12443001--12443050	7	6.9	7	84	6	64	84	0	14	2	0.72
12442998--12443042	11	4.2	11	85	2	56	86	0	13	0	0.57
12442998--12443042	22	2.0	22	91	0	72	86	0	13	0	0.57
12442979--12443050	37	1.9	36	83	10	92	80	0	15	4	0.86
12442998--12443050	18	2.9	18	88	5	79	84	0	13	1	0.69
12444239--12444623	42	9.5	41	85	8	522	24	17	22	35	1.95
12444398--12444619	83	2.7	84	92	2	387	23	15	22	37	1.93
12444398--12444623	41	5.5	41	91	1	371	24	16	22	36	1.94
12444563--12444684	61	2.0	60	96	1	226	25	19	21	33	1.97
12444623--12444711	41	2.1	42	89	2	135	24	20	24	30	1.99
12444718--12444762	10	4.7	10	83	8	58	86	11	0	2	0.65
12444720--12444755	12	2.9	12	87	4	54	88	11	0	0	0.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12444725--12444761	19	1.9	19	94	0	65	83	13	0	2	0.74
12445022--12445070	15	3.2	15	78	21	57	34	0	4	61	1.15
12445024--12445082	23	2.7	22	82	12	61	33	0	3	62	1.12
12445025--12445126	14	6.6	16	74	19	76	30	0	2	65	1.14
12445055--12445095	3	14.7	3	80	14	52	29	0	0	70	0.87
12445024--12445128	37	2.8	38	76	15	103	30	0	2	65	1.13
12445106--12445216	32	3.4	31	79	12	114	21	8	4	65	1.37
12446072--12446193	4	30.0	4	70	25	62	21	3	2	72	1.10
12446060--12446199	25	5.3	25	70	21	83	20	3	2	74	1.07
12446112--12446187	10	8.4	9	76	18	54	17	3	0	78	0.89
12446137--12446180	17	2.5	17	88	3	61	13	4	0	81	0.83
12446117--12446199	41	2.0	42	84	11	109	16	4	0	78	0.92
12446220--12446613	62	6.7	58	84	8	498	44	7	13	34	1.72
12448501--12448553	26	2.0	26	96	0	97	28	26	18	26	1.98
12447709--12449180	718	2.0	720	88	3	2170	27	24	22	25	2.00
12449386--12449438	26	2.0	26	100	0	106	30	26	16	26	1.97
12450287--12450339	26	2.0	26	92	0	88	28	24	18	28	1.98
12450612--12451378	397	1.9	397	91	1	1241	34	22	17	26	1.96
12452261--12452291	12	2.6	12	100	0	62	0	64	25	9	1.24
12452477--12452527	26	2.0	26	92	0	84	31	27	13	27	1.94
12451586--12453817	903	2.5	891	86	4	2933	25	24	24	25	2.00
12453367--12453419	26	2.0	26	100	0	106	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12454168--12454227	26	2.4	26	80	5	70	33	25	13	28	1.93
12453010--12454618	801	2.0	802	89	0	2430	24	24	24	26	2.00
12455066--12455118	26	2.0	26	96	0	97	28	24	20	26	1.99
12455766--12455790	8	3.1	8	100	0	50	0	60	28	12	1.32
12455968--12456020	26	2.0	26	96	0	97	26	24	20	28	1.99
12458632--12458684	26	2.0	26	96	0	97	24	26	20	28	1.99
12456859--12462044	900	5.8	902	85	3	6472	26	24	23	25	2.00
12460432--12460484	26	2.0	26	100	0	106	30	26	16	26	1.97
12466985--12467012	10	2.8	10	100	0	56	32	17	39	10	1.84
12470285--12470335	26	2.0	26	92	0	84	31	29	11	27	1.92
12470311--12471665	708	1.9	709	87	1	1993	28	22	22	26	1.99
12471895--12471947	26	2.0	26	96	0	97	28	26	18	26	1.98
12473505--12473557	26	2.0	26	96	0	97	28	26	18	26	1.98
12474397--12474449	26	2.0	26	96	0	97	28	24	20	26	1.99
12475265--12475317	26	2.0	26	96	0	97	28	24	20	26	1.99
12476168--12476217	26	1.9	26	95	0	91	26	26	16	32	1.96
12472628--12479657	902	7.9	889	84	4	8685	25	24	24	25	2.00
12477924--12477976	26	2.0	26	100	0	106	26	26	20	26	1.99
12478824--12478876	26	2.0	26	100	0	106	26	26	20	26	1.99
12479536--12479857	171	1.9	171	83	2	423	16	28	31	23	1.96
12481678--12482007	171	1.9	171	82	0	408	17	30	30	21	1.96
12482856--12482934	26	3.0	26	96	3	142	30	22	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12483820--12485287	714	2.1	711	88	2	2156	26	23	23	26	2.00
12487066--12487121	26	2.2	26	96	0	103	28	23	19	28	1.98
12490631--12490683	26	2.0	26	88	0	79	28	26	18	26	1.98
12491530--12491582	26	2.0	26	96	0	97	30	28	15	26	1.96
12492425--12492474	25	2.0	26	92	4	84	30	26	18	26	1.98
12486489--12498766	890	13.7	899	88	2	15750	25	24	23	25	2.00
12494221--12494270	26	1.9	26	100	0	100	24	28	20	28	1.99
12498692--12498744	26	2.0	26	92	0	88	28	24	18	28	1.98
12499550--12499628	26	3.0	26	90	3	124	26	26	17	29	1.98
12500483--12500534	27	1.9	27	92	0	86	28	23	17	30	1.97
12502287--12502339	26	2.0	26	96	0	97	28	26	18	26	1.98
12504755--12504833	26	3.0	26	86	0	122	27	25	18	27	1.98
12505067--12505096	15	2.0	15	93	0	51	30	33	13	23	1.93
12505697--12505749	26	2.0	26	92	0	88	28	24	18	28	1.98
12507154--12507206	26	2.0	26	96	0	97	26	28	20	24	1.99
12506286--12508940	889	3.0	882	87	4	3690	25	24	24	25	2.00
12509318--12509370	26	2.0	26	92	0	88	30	26	16	26	1.97
12511945--12511997	26	2.0	26	88	0	79	30	24	20	24	1.99
12512848--12512900	26	2.0	26	96	0	97	28	26	18	26	1.98
12511544--12515867	903	4.8	898	85	3	5507	25	24	23	25	2.00
12514636--12514688	26	2.0	26	96	0	97	28	26	18	26	1.98
12516268--12516320	26	2.0	26	92	0	88	26	22	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12517173--12517223	26	2.0	26	96	0	93	29	23	19	27	1.98
12517905--12517957	26	2.0	26	88	0	79	30	22	20	26	1.98
12517152--12518573	722	2.0	725	88	2	2111	28	23	22	26	1.99
12518796--12518848	26	2.0	26	96	0	97	30	24	16	28	1.97
12520265--12520317	26	2.0	26	92	0	88	30	24	18	26	1.98
12519409--12522819	882	3.8	882	89	3	4693	26	24	23	25	2.00
12522041--12522093	26	2.0	26	92	0	88	28	24	18	28	1.98
12523648--12523700	26	2.0	26	92	0	88	28	24	18	28	1.98
12524550--12524602	26	2.0	26	96	0	97	26	28	20	24	1.99
12525454--12525506	26	2.0	26	96	0	97	24	26	22	26	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131