genome.fa.s2.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  95  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17075937--17075987	16	3.1	16	77	11	59	66	7	17	7	1.41
17075937--17075974	8	4.9	8	80	6	51	65	10	13	10	1.47
17085023--17085065	22	2.0	22	86	9	61	13	4	11	69	1.33
17092152--17092251	50	2.0	50	100	0	200	24	28	12	36	1.91
17110214--17110246	2	16.5	2	100	0	66	51	0	0	48	1.00
17114781--17114831	3	17.0	3	100	0	102	0	33	0	66	0.92
17115271--17115340	7	10.3	7	75	6	63	17	4	1	77	1.01
17115263--17115349	40	2.1	41	85	8	115	25	5	2	66	1.25
17119987--17120017	16	1.9	16	93	0	53	25	12	12	48	1.77
17120167--17120208	15	2.7	15	82	10	50	61	2	2	33	1.21
17120527--17120627	26	3.9	26	84	0	121	19	25	25	28	1.99
17120646--17120670	6	4.2	6	100	0	50	16	0	0	84	0.63
17121675--17121708	11	3.0	11	86	4	50	67	0	0	32	0.91
17125611--17125734	12	10.6	11	72	19	53	77	4	13	4	1.08
17125670--17125719	18	2.7	19	84	9	68	86	6	8	0	0.72
17125668--17125718	14	3.3	15	78	15	52	86	5	7	0	0.71
17125642--17125700	27	2.2	27	81	6	66	84	1	8	5	0.82
17126669--17126848	85	2.1	84	80	7	195	25	14	15	44	1.84
17127604--17127677	26	2.8	25	74	8	76	21	27	22	28	1.99
17127664--17127736	26	2.8	26	79	2	76	26	26	19	28	1.98
17127799--17127841	3	14.3	3	100	0	86	32	0	0	67	0.91
17128625--17128670	20	2.2	21	77	14	51	13	0	10	76	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17128630--17128661	15	2.1	15	94	0	55	6	0	15	78	0.95
17128793--17128835	9	4.9	9	77	5	52	83	0	0	16	0.64
17134836--17134894	21	2.4	26	68	28	65	61	6	20	11	1.53
17134844--17134895	21	2.5	21	100	0	104	61	5	21	11	1.50
17139445--17139482	20	1.9	20	84	10	51	23	10	10	55	1.65
17142076--17142241	84	2.0	82	90	4	262	35	19	13	31	1.90
17150681--17150736	21	2.8	21	75	8	62	28	25	14	32	1.94
17154723--17154779	19	3.0	19	89	0	78	15	0	35	49	1.45
17154737--17154796	31	1.9	31	86	6	86	16	0	31	51	1.45
17156357--17156401	20	2.2	20	88	0	63	26	24	22	26	2.00
17156369--17156431	20	3.2	20	82	8	74	26	15	22	34	1.94
17156892--17156940	24	2.0	24	92	0	80	42	2	0	55	1.11
17156901--17156952	24	2.2	24	89	0	77	42	0	1	55	1.10
17156992--17157044	24	2.2	24	89	0	79	35	1	11	50	1.49
17157064--17157235	89	1.9	90	88	5	260	41	6	9	42	1.64
17159986--17160026	9	4.8	9	96	3	68	56	0	0	43	0.99
17164080--17164139	29	2.0	31	87	6	88	48	0	8	43	1.33
17168740--17168766	6	4.5	6	100	0	54	70	0	0	29	0.88
17169282--17169315	13	2.6	13	90	9	52	79	0	2	17	0.86
17170567--17170609	21	2.0	21	86	8	61	65	2	9	23	1.34
17170711--17170755	14	3.2	13	84	12	54	68	0	2	28	1.01
17170728--17170760	17	1.9	17	100	0	66	66	0	3	30	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17170716--17170873	72	2.2	71	80	12	166	64	1	5	28	1.24
17170979--17171083	19	5.6	18	78	11	104	38	27	13	20	1.90
17170994--17171098	38	2.8	37	83	2	129	39	28	14	18	1.89
17171072--17171133	19	3.3	19	73	8	63	48	32	8	11	1.68
17171324--17171363	12	3.2	13	86	10	57	72	0	0	27	0.85
17174269--17174346	33	2.4	33	100	0	156	34	15	8	41	1.78
17179420--17179491	9	7.7	9	76	6	54	83	4	5	6	0.91
17179437--17179491	25	2.2	25	83	6	67	85	5	1	7	0.80
17179431--17179492	24	2.6	25	80	19	78	83	4	3	8	0.88
17180682--17180819	34	3.9	35	72	6	91	20	17	13	49	1.79
17181121--17181156	14	2.7	13	87	8	54	86	13	0	0	0.58
17182648--17182687	21	2.0	20	85	5	53	72	7	15	5	1.24
17182804--17182842	20	2.0	20	89	0	60	79	5	10	5	1.04
17183954--17184014	26	2.3	26	88	0	86	49	19	9	21	1.77
17184043--17184072	15	2.0	15	93	0	51	36	33	3	26	1.73
17187661--17187720	20	2.9	20	80	5	66	63	0	25	11	1.28
17188074--17188109	18	2.1	16	90	10	54	75	0	11	13	1.06
17188041--17188113	28	2.6	28	74	8	69	73	1	13	10	1.15
17189134--17189178	23	2.0	23	82	8	56	33	6	11	48	1.65
17193204--17193236	16	2.1	16	88	5	50	69	9	0	21	1.15
17196922--17197107	61	2.9	65	78	12	204	23	18	9	48	1.77
17197051--17197308	67	3.9	66	81	6	297	25	18	9	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17197111--17197306	33	5.9	33	74	8	164	26	17	8	47	1.77
17197399--17197458	28	2.1	28	84	0	75	20	16	15	48	1.81
17199951--17200008	20	2.8	20	78	7	62	56	15	13	13	1.67
17200270--17200334	30	2.1	30	86	8	87	43	9	18	29	1.81
17201102--17201146	16	2.8	16	100	0	90	53	6	17	22	1.67
17214155--17214402	124	2.0	124	95	0	451	41	11	13	33	1.80
17215906--17215934	4	7.2	4	100	0	58	0	24	24	51	1.48
17220201--17220228	2	14.0	2	100	0	56	0	50	0	50	1.00
17221854--17221904	24	2.1	24	100	0	102	27	11	19	41	1.86
17223260--17223302	2	21.5	2	100	0	86	48	0	0	51	1.00
17232500--17232529	9	3.3	9	95	0	51	86	0	3	10	0.67
17233441--17233548	45	2.4	45	81	6	112	37	11	15	35	1.83
17233622--17233665	23	1.9	23	86	9	63	38	6	9	45	1.63
17233804--17233854	18	2.8	18	90	0	75	35	19	5	39	1.76
17233822--17233877	18	3.2	18	87	2	69	37	14	7	41	1.73
17233931--17234083	67	2.3	67	77	4	157	41	13	7	37	1.74
17234025--17234090	31	2.0	34	88	8	102	37	18	9	34	1.82
17234000--17234083	18	4.9	18	73	14	79	39	14	8	38	1.76
17234038--17234092	18	3.4	16	83	11	67	36	18	9	36	1.82
17235193--17235252	23	2.6	23	84	7	68	31	6	28	33	1.83
17237425--17237482	19	3.2	18	79	18	66	27	6	12	53	1.63
17237488--17237606	21	5.0	26	72	22	109	30	1	10	57	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17237488--17237602	25	4.9	25	75	17	104	29	1	11	57	1.44
17237540--17237615	24	3.2	24	75	14	68	27	2	13	56	1.50
17237488--17237625	47	3.0	44	81	14	163	28	1	11	58	1.42
17237605--17237648	12	3.7	12	87	0	61	18	4	15	61	1.50
17237583--17237662	20	3.8	20	73	12	70	25	5	12	57	1.55
17237493--17237820	23	13.1	24	66	25	87	28	3	11	56	1.51
17237588--17237736	55	3.1	44	73	18	127	24	5	12	57	1.57
17237633--17237826	55	3.5	55	93	0	316	30	5	10	54	1.56
17237688--17237796	32	3.7	31	73	22	108	30	3	9	56	1.48
17237830--17237875	24	1.9	24	95	0	83	30	4	10	54	1.55
17243942--17243995	20	2.7	20	97	2	99	85	0	9	5	0.75
17243953--17244022	28	2.6	27	79	4	70	75	1	14	8	1.10
17245465--17245541	34	2.2	35	84	11	97	27	10	20	41	1.85
17245846--17245881	12	2.8	13	87	8	56	16	0	8	75	1.04
17246503--17246540	20	2.0	18	90	10	58	31	7	13	47	1.71
17246522--17246560	16	2.4	16	86	4	51	28	7	10	53	1.62
17246546--17246601	21	2.8	21	86	5	80	35	0	8	55	1.31
17246546--17246782	24	10.0	24	70	20	126	31	4	10	53	1.56
17246546--17246786	99	2.5	100	79	11	256	31	4	10	53	1.55
17248352--17248610	143	1.8	142	81	4	324	29	11	16	43	1.82
17248669--17248711	21	2.0	21	100	0	86	27	13	13	44	1.83
17250017--17250130	60	1.9	60	89	3	176	25	15	12	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17250140--17250239	19	5.3	19	79	0	101	43	40	3	14	1.60
17250135--17250239	38	2.7	38	85	1	120	41	41	2	13	1.59
17250291--17250359	19	3.7	19	67	11	52	39	42	1	17	1.58
17250347--17250443	26	3.5	26	75	19	88	44	38	0	17	1.49
17250348--17250437	32	2.8	31	81	8	101	44	37	0	17	1.49
17250662--17250780	19	6.3	19	83	0	130	42	40	2	14	1.59
17250662--17250780	57	2.1	57	85	0	157	42	40	2	14	1.59
17250832--17250900	19	3.7	19	67	11	52	39	42	1	17	1.58
17250888--17250984	26	3.5	26	75	19	88	44	38	0	17	1.49
17250889--17250978	32	2.8	31	81	8	101	44	37	0	17	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131