genome.fa.s2.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  110  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19633818--19633895	40	2.0	41	85	14	110	69	2	6	21	1.24
19633818--19633895	39	2.0	40	85	14	108	69	2	6	21	1.24
19643550--19643592	17	2.4	18	84	3	61	32	32	6	27	1.84
19644699--19644734	19	1.9	18	88	5	54	19	11	36	33	1.87
19649621--19649653	3	11.7	3	87	12	52	36	0	0	63	0.95
19650855--19650901	9	5.2	9	80	10	60	25	0	2	72	0.96
19650870--19650902	17	1.9	17	100	0	66	33	0	0	66	0.92
19651229--19651312	37	2.3	37	82	0	114	45	17	22	14	1.85
19651415--19651489	34	2.2	34	87	0	105	46	10	22	20	1.81
19651516--19652981	170	8.6	170	84	3	1707	46	11	18	22	1.82
19651516--19652981	510	2.9	511	86	2	2016	46	11	18	22	1.82
19651516--19652981	339	4.3	341	85	3	1823	46	11	18	22	1.82
19652911--19653000	34	2.6	34	83	0	99	46	11	21	21	1.81
19654049--19654091	21	2.0	21	86	8	61	4	6	4	83	0.89
19665746--19665812	35	1.9	34	82	11	82	70	2	1	25	1.10
19666818--19666859	18	2.4	17	81	14	50	7	4	4	83	0.91
19666853--19666881	9	3.2	9	100	0	58	20	0	0	79	0.74
19666837--19666877	20	2.0	20	85	0	55	12	2	0	85	0.70
19667125--19667170	24	2.0	24	91	4	76	32	10	6	50	1.63
19670833--19670901	17	4.1	17	79	5	59	44	13	7	34	1.71
19671150--19671513	45	8.1	45	75	9	280	43	13	9	34	1.76
19671150--19671513	89	4.1	90	78	7	325	43	13	9	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19671252--19671461	22	9.4	22	67	10	95	43	14	9	32	1.77
19671295--19671466	22	7.8	22	68	10	100	43	13	9	33	1.77
19672505--19672549	12	3.7	12	81	3	54	17	2	0	80	0.82
19672830--19672868	7	5.4	7	85	14	53	0	17	0	82	0.68
19673415--19673442	11	2.5	11	100	0	56	50	7	17	25	1.72
19679425--19679460	18	2.0	18	88	0	54	52	0	2	44	1.15
19681965--19682037	30	2.4	30	84	4	85	49	4	12	34	1.59
19682422--19682640	108	2.0	108	94	0	384	52	3	11	31	1.55
19682791--19682824	17	1.9	17	88	5	50	44	8	2	44	1.50
19683973--19684091	60	2.0	60	85	6	161	45	5	8	40	1.59
19684135--19684259	63	2.0	63	82	3	153	47	4	7	40	1.52
19684278--19684381	53	2.0	53	83	7	131	41	9	10	38	1.72
19684331--19684455	63	2.0	63	82	6	155	44	7	8	40	1.61
19686457--19686503	23	2.0	23	91	0	76	21	25	0	53	1.46
19687958--19687995	18	2.1	19	90	5	60	0	5	2	92	0.47
19687958--19687996	13	3.0	13	88	0	60	0	5	5	89	0.58
19689024--19689086	29	2.3	28	84	13	78	28	6	14	50	1.67
19689031--19689086	29	1.9	29	89	7	87	30	7	16	46	1.73
19705287--19705414	54	2.4	54	79	0	130	33	12	22	31	1.91
19716244--19716291	22	2.2	22	96	0	87	35	6	0	58	1.23
19721036--19721075	16	2.4	18	80	16	50	42	2	0	55	1.13
19721504--19721545	22	1.9	22	95	0	75	54	2	28	14	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19721503--19721555	22	2.4	22	81	6	54	60	3	24	11	1.47
19724498--19724539	21	2.0	21	81	9	50	57	7	2	33	1.39
19728926--19728969	23	1.9	23	90	0	70	11	0	34	54	1.36
19729751--19729785	8	4.1	8	86	13	52	85	0	0	14	0.59
19729748--19729785	18	2.2	17	95	4	67	84	0	0	15	0.63
19730288--19730522	21	10.9	21	71	17	117	31	6	12	49	1.66
19730292--19730686	41	9.2	41	82	10	403	31	5	12	50	1.63
19730313--19730458	52	3.0	52	86	11	197	29	8	13	49	1.70
19730288--19730624	93	3.8	93	79	13	373	31	5	12	50	1.63
19730492--19730552	29	2.1	30	93	3	106	37	1	9	50	1.45
19730475--19730571	49	1.9	50	93	4	169	36	4	9	50	1.54
19730430--19730612	90	2.0	91	88	3	271	34	4	10	49	1.58
19730292--19730653	131	2.7	132	83	4	428	31	6	11	50	1.63
19730485--19730628	49	3.1	49	82	14	157	34	3	11	51	1.54
19730313--19730682	172	2.1	175	86	3	498	32	5	11	50	1.62
19730771--19730812	18	2.3	18	83	0	57	28	4	11	54	1.57
19730984--19731014	2	15.5	2	93	0	53	45	0	0	54	0.99
19731034--19731100	26	2.6	26	81	6	75	34	5	13	46	1.68
19731646--19731677	15	2.2	15	94	5	57	18	9	21	50	1.75
19732187--19732233	17	2.8	18	81	15	57	72	0	19	8	1.10
19733053--19733101	23	2.0	23	84	7	62	24	2	6	67	1.24
19737842--19737866	13	1.9	13	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19737839--19737885	24	2.0	24	87	4	69	46	0	0	53	1.00
19737845--19737895	24	2.1	24	82	7	59	45	0	0	54	0.99
19738174--19738205	15	2.1	16	94	5	57	28	0	6	65	1.16
19738589--19738617	7	4.1	7	100	0	58	13	0	0	86	0.58
19738920--19738954	18	1.9	18	88	0	52	45	2	0	51	1.16
19740302--19740369	24	2.9	23	73	6	64	45	2	1	50	1.26
19746784--19746837	28	1.9	28	84	0	72	64	9	9	16	1.47
19755021--19755072	25	2.1	25	96	0	95	25	15	23	36	1.93
19757765--19757802	4	9.5	4	94	0	67	73	0	2	23	0.95
19758638--19758686	10	4.9	10	79	18	57	59	2	0	38	1.09
19758999--19759046	23	2.1	21	85	11	60	16	2	6	75	1.11
19759183--19759239	23	2.4	24	82	11	64	22	1	5	70	1.17
19759153--19759236	23	4.3	18	68	20	53	26	2	2	69	1.13
19759233--19759270	17	2.2	17	90	0	58	34	0	2	63	1.09
19759581--19759640	6	10.0	6	85	7	68	60	0	23	16	1.36
19761949--19762000	25	2.1	24	82	13	61	42	3	5	48	1.45
19761987--19762177	99	1.9	98	83	8	246	36	5	10	47	1.62
19762219--19762294	20	4.1	20	74	25	69	53	9	5	31	1.55
19762267--19762306	21	2.0	20	85	9	55	47	12	7	32	1.69
19762276--19762323	21	2.3	21	88	0	69	47	14	8	29	1.73
19762324--19762420	24	3.8	25	73	11	63	55	9	3	31	1.47
19763090--19763124	17	2.2	16	90	10	54	8	5	2	82	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19763488--19763526	18	2.1	19	90	4	62	38	15	10	35	1.81
19763589--19763644	17	3.2	17	78	16	62	37	14	14	33	1.86
19763578--19763644	34	1.9	35	88	8	102	35	11	13	38	1.82
19763599--19763715	17	6.7	18	69	10	55	38	13	12	35	1.83
19763650--19763772	18	7.0	17	68	7	66	34	13	15	37	1.86
19763713--19763772	17	3.5	17	75	4	57	31	11	18	38	1.87
19763917--19764018	33	3.2	33	71	10	84	42	13	7	36	1.74
19763882--19764018	64	2.1	64	80	0	157	43	13	9	33	1.77
19764099--19764154	17	3.3	17	79	0	58	42	16	8	32	1.79
19764431--19764485	23	2.4	23	78	6	67	43	12	3	40	1.60
19764736--19764794	24	2.7	21	80	16	75	32	28	16	22	1.96
19764746--19764793	24	2.0	24	95	0	87	31	29	18	20	1.97
19767790--19768133	177	1.9	177	93	2	593	36	16	13	34	1.87
19769141--19769185	21	2.1	21	84	8	56	55	13	2	28	1.50
19769176--19769226	21	2.4	21	90	0	75	49	15	7	27	1.72
19770049--19770083	18	1.9	18	88	0	52	40	20	2	37	1.67
19780985--19781018	15	2.2	16	89	5	52	8	0	2	88	0.62
19780990--19781018	10	3.0	10	95	5	51	6	0	0	93	0.36
19796499--19796546	24	2.0	24	83	0	60	41	6	2	50	1.39
19796523--19796556	9	3.6	9	85	14	50	41	2	0	55	1.15
19797453--19797536	34	2.5	34	81	7	93	42	1	5	50	1.34
19797568--19797606	21	1.9	19	90	10	60	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19798805--19798915	58	1.9	57	83	5	143	44	18	3	33	1.68
19799518--19799636	62	1.9	62	81	6	143	42	18	2	36	1.64
19799596--19799677	26	3.3	26	79	5	89	43	23	0	32	1.54
19806728--19806782	18	2.8	21	70	16	53	9	14	3	72	1.23
19809065--19809113	19	2.6	19	93	6	82	44	28	6	20	1.75
19810137--19810181	17	2.5	18	89	7	65	26	2	11	60	1.42
19810280--19810344	33	2.0	33	90	0	103	60	4	6	29	1.41
19815010--19815078	30	2.3	30	87	0	111	44	37	2	14	1.60
19815909--19815937	14	2.1	14	100	0	58	44	13	0	41	1.44
19818291--19818524	126	1.9	124	82	8	296	44	8	5	41	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131