genome.fa.s2.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  128  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23415167--23415221	27	2.0	28	96	3	103	7	21	14	56	1.63
23415165--23415231	27	2.3	29	82	17	93	5	19	19	55	1.63
23415801--23415834	15	2.5	13	86	13	50	73	0	5	20	1.04
23416129--23416181	16	3.2	16	76	5	52	41	1	1	54	1.22
23439581--23439635	22	2.5	21	77	16	58	56	1	0	41	1.10
23439620--23439664	14	3.1	15	78	9	58	60	0	0	40	0.97
23451310--23451354	2	23.0	2	90	4	74	46	0	0	53	1.00
23451491--23451520	2	15.0	2	92	0	51	46	0	3	50	1.18
23456194--23456292	23	4.3	23	75	15	80	49	0	1	49	1.07
23456234--23456558	20	16.3	20	64	21	66	48	1	1	48	1.21
23456225--23456559	31	10.2	31	65	22	107	48	1	1	48	1.21
23456181--23456560	46	8.5	44	67	17	139	48	1	1	47	1.23
23456246--23456294	14	3.4	14	78	21	57	46	0	0	53	1.00
23456196--23456287	26	3.8	24	71	17	75	48	0	1	50	1.08
23456144--23456295	11	14.5	11	67	19	58	48	1	1	48	1.18
23456146--23456323	87	2.0	88	83	9	227	48	1	1	48	1.21
23456147--23456342	91	2.2	87	81	9	218	48	2	2	47	1.25
23456213--23456381	91	1.9	89	80	7	198	50	1	3	44	1.26
23456364--23456506	11	12.6	11	65	19	53	48	2	0	48	1.18
23456143--23456381	87	2.7	89	79	12	210	49	1	2	46	1.27
23456336--23456486	78	1.9	83	81	14	192	49	1	2	45	1.27
23456380--23456443	34	1.9	32	84	12	85	51	1	1	45	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23456363--23456569	31	6.4	33	75	12	119	48	1	0	49	1.13
23456414--23456568	20	7.8	20	67	18	74	47	1	0	50	1.09
23458183--23458220	18	2.1	18	85	9	51	34	7	5	52	1.53
23464494--23464551	29	1.9	29	82	6	71	37	1	0	60	1.07
23466226--23466309	44	1.9	44	87	0	123	20	10	17	51	1.75
23474693--23474735	22	2.0	22	90	0	68	34	4	11	48	1.60
23474977--23475026	25	2.0	25	84	0	64	16	18	18	48	1.82
23476525--23476571	20	2.3	20	96	0	85	40	8	12	38	1.74
23478666--23478709	22	2.0	22	95	0	79	31	6	13	47	1.69
23492258--23492322	27	2.4	27	92	2	105	44	6	16	32	1.73
23493627--23493705	34	2.3	33	80	6	95	43	3	10	43	1.56
23494118--23494150	3	11.0	3	100	0	66	66	0	0	33	0.92
23496224--23496254	3	10.3	3	100	0	62	32	0	0	67	0.91
23503548--23503597	22	2.4	21	84	15	68	56	0	0	44	0.99
23503617--23503641	13	1.9	13	100	0	50	40	0	8	52	1.31
23505797--23505855	30	2.0	30	96	0	109	32	16	11	38	1.86
23527358--23527425	34	2.0	34	97	0	127	33	11	25	29	1.91
23535658--23535695	20	1.9	20	84	10	51	68	5	0	26	1.11
23537170--23537460	145	2.0	145	98	0	564	46	10	17	24	1.80
23537507--23537537	4	7.8	4	100	0	62	0	0	25	74	0.82
23540387--23540506	61	2.0	61	100	0	240	49	8	15	27	1.73
23541645--23541670	3	8.7	3	100	0	52	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23542734--23542779	9	4.7	9	82	17	56	58	0	0	41	0.98
23542728--23542779	22	2.6	21	82	14	65	57	0	0	42	0.98
23542960--23543259	166	1.8	166	85	1	422	30	18	16	35	1.92
23545587--23545692	54	1.9	55	83	5	135	28	15	12	44	1.82
23545529--23545854	146	2.2	146	83	3	399	28	17	12	41	1.86
23545774--23545904	56	2.4	55	84	2	163	32	18	3	45	1.67
23545760--23546004	55	4.5	55	77	3	188	30	14	9	45	1.77
23553801--23553903	34	2.9	35	82	4	127	30	16	18	34	1.93
23556367--23556398	10	3.2	10	95	0	55	40	3	9	46	1.52
23558715--23558838	64	1.9	64	84	9	164	33	12	11	43	1.77
23560739--23560783	21	2.1	21	83	0	54	37	4	37	20	1.73
23561289--23561351	22	2.9	22	79	13	60	31	0	1	66	1.01
23564321--23564354	17	2.0	17	94	0	59	61	5	14	17	1.52
23565013--23565073	18	3.4	18	68	8	52	32	21	8	37	1.83
23565004--23565094	36	2.5	36	76	0	101	32	28	7	30	1.85
23573580--23574330	356	2.1	357	86	1	1051	35	14	13	36	1.85
23583994--23584034	16	2.4	18	84	12	59	21	0	4	73	1.02
23584497--23584531	17	2.1	17	89	10	54	28	0	0	71	0.86
23586623--23586888	45	5.9	45	71	17	171	40	21	11	25	1.87
23586791--23586887	51	1.9	51	82	4	124	41	20	10	27	1.85
23587754--23587786	17	1.9	17	100	0	66	18	9	0	72	1.10
23587942--23587989	24	2.0	24	95	0	87	25	14	20	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23596582--23596621	16	2.5	17	84	8	57	22	0	5	72	1.04
23597831--23597889	24	2.5	24	81	5	68	23	1	13	61	1.42
23598186--23598233	25	2.0	23	88	8	69	81	0	12	6	0.87
23598187--23598231	17	2.7	16	86	10	63	84	0	11	4	0.76
23600732--23600769	17	2.2	17	86	9	51	18	23	5	52	1.65
23601873--23602004	3	43.7	3	76	8	56	65	8	3	22	1.37
23601929--23602068	65	2.2	65	83	5	167	63	7	5	22	1.43
23602223--23602619	114	3.5	113	82	3	447	44	16	21	17	1.87
23602443--23602733	114	2.5	113	78	4	264	45	17	19	16	1.86
23602559--23603135	121	4.8	118	77	7	424	45	12	22	19	1.84
23603070--23603175	32	3.3	32	69	19	94	44	13	23	18	1.85
23602759--23603161	120	3.4	119	80	5	427	45	11	22	20	1.82
23603077--23603199	64	1.9	64	93	0	210	43	13	24	17	1.86
23603077--23603221	64	2.3	64	88	0	209	45	15	22	16	1.85
23602956--23603289	184	1.8	184	84	2	456	45	14	23	17	1.85
23602956--23603339	184	2.1	184	81	3	452	44	14	23	17	1.85
23603145--23603431	120	2.4	120	77	5	294	45	17	21	15	1.85
23603636--23603693	30	1.9	31	85	3	82	32	10	18	37	1.85
23604713--23604737	9	2.8	9	100	0	50	0	8	0	92	0.40
23608457--23608489	7	4.7	7	100	0	66	12	0	0	87	0.53
23608734--23608769	14	2.6	14	95	4	65	83	0	2	13	0.76
23609627--23609721	3	31.3	3	77	10	70	65	4	3	27	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23609634--23609773	72	2.0	71	90	4	219	62	6	3	27	1.36
23612141--23612176	17	2.1	17	89	0	54	69	0	0	30	0.89
23627474--23627508	16	2.1	17	89	5	54	11	14	0	74	1.08
23627683--23628032	40	8.4	42	74	13	217	46	18	11	23	1.82
23627733--23628101	81	4.5	82	81	5	343	47	17	11	23	1.80
23627683--23628110	41	10.3	41	78	8	325	46	18	11	23	1.81
23628328--23628377	21	2.4	21	80	6	57	40	22	6	32	1.78
23628378--23628416	20	2.0	20	84	0	51	28	15	15	41	1.87
23628348--23628553	109	1.9	107	81	6	243	35	17	13	33	1.88
23628550--23628622	23	3.4	22	80	14	71	41	16	6	35	1.75
23628547--23628618	22	3.3	22	81	14	78	41	16	6	34	1.75
23629000--23629173	62	2.8	62	79	6	183	30	25	9	35	1.87
23630914--23630963	11	4.5	11	78	12	57	2	28	0	70	0.99
23631533--23631579	18	2.5	19	93	3	78	72	12	6	8	1.27
23632227--23632260	10	3.4	10	87	0	50	20	0	58	20	1.39
23632230--23632270	20	2.0	20	85	0	55	21	0	58	19	1.39
23632450--23632601	64	2.4	60	78	9	153	32	13	14	38	1.86
23635845--23635874	6	5.0	6	100	0	60	83	0	0	16	0.65
23638133--23638174	19	2.4	17	81	18	50	57	0	7	35	1.26
23640558--23640615	28	2.1	28	100	0	116	32	10	18	37	1.85
23645102--23645143	19	2.2	19	91	0	66	16	0	4	78	0.91
23645199--23645338	61	2.3	61	81	7	158	52	6	8	32	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23645358--23645570	57	3.6	58	84	3	266	46	6	12	35	1.67
23645335--23645570	60	4.0	59	80	8	264	47	6	12	33	1.66
23661841--23661883	20	2.1	21	83	8	54	27	6	4	60	1.43
23663898--23663940	3	14.3	3	100	0	86	32	0	0	67	0.91
23664356--23664424	11	6.3	11	88	5	95	8	1	18	71	1.20
23664812--23664849	12	3.2	12	88	3	51	23	0	0	76	0.79
23665021--23665063	21	2.0	22	86	4	61	62	4	2	30	1.28
23671476--23671512	19	1.9	19	88	0	56	56	8	24	10	1.60
23676035--23676140	41	2.6	39	80	7	115	36	16	15	32	1.89
23676308--23676913	114	5.2	116	74	8	380	20	21	14	42	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131