genome.fa.s2.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  62  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12282971--12283031	26	2.4	26	84	15	92	31	27	14	26	1.95
12283451--12283503	26	2.0	26	92	0	88	28	24	20	26	1.99
12282628--12283523	480	1.9	483	81	7	1108	24	27	23	24	2.00
12284346--12284398	26	2.0	26	92	0	88	28	28	18	24	1.98
12284885--12284937	26	2.0	26	96	0	97	24	26	22	26	2.00
12286494--12286572	26	3.0	26	96	0	140	30	22	17	29	1.97
12287211--12287236	4	6.5	4	100	0	52	0	73	26	0	0.84
12286546--12291265	877	5.5	871	84	5	5772	25	24	24	25	2.00
12291530--12291582	26	2.0	26	96	0	97	28	26	18	26	1.98
12293330--12293382	26	2.0	26	96	0	97	28	26	18	26	1.98
12291265--12294987	872	4.2	896	85	3	4742	25	24	23	25	2.00
12298351--12298402	26	2.0	26	100	0	104	26	26	19	26	1.99
12301029--12301086	26	2.2	26	87	3	89	29	24	18	27	1.98
12300339--12302736	904	2.7	904	88	1	3348	26	24	23	25	2.00
12301938--12301990	26	2.0	26	88	0	79	28	24	16	30	1.97
12303517--12303569	26	2.0	26	100	0	106	26	26	20	26	1.99
12304416--12304468	26	2.0	26	89	7	81	28	22	16	32	1.96
12303443--12306052	898	3.0	888	86	4	3555	26	24	23	25	2.00
12305273--12306774	709	2.1	700	87	3	2109	27	23	23	25	2.00
12307771--12307823	26	2.0	26	96	0	97	28	26	18	26	1.98
12308281--12308306	10	2.6	10	100	0	52	65	7	7	19	1.43
12309170--12309222	26	2.0	26	85	0	70	33	22	16	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12310138--12310190	26	2.0	26	96	0	97	28	26	18	26	1.98
12309384--12313955	883	5.2	894	84	5	5543	25	24	23	25	2.00
12312792--12312844	26	2.0	26	96	0	97	28	26	18	26	1.98
12314639--12314663	12	2.1	12	100	0	50	0	64	28	8	1.22
12314841--12314893	26	2.0	26	100	0	106	26	26	20	26	1.99
12315084--12316482	700	2.0	699	87	2	2002	28	24	20	26	1.99
12315783--12318928	874	3.6	869	86	3	4089	26	24	23	25	2.00
12320180--12320258	26	3.0	26	90	0	122	27	25	18	27	1.98
12320329--12320365	14	2.6	14	95	0	65	18	32	35	13	1.90
12321120--12321172	26	2.0	26	96	0	97	28	26	18	26	1.98
12320206--12322797	880	2.9	889	85	4	3483	25	24	24	26	2.00
12322034--12323577	720	2.1	717	87	1	2198	26	23	23	26	2.00
12324055--12324107	26	2.0	26	88	0	79	28	28	16	26	1.97
12324081--12325554	712	2.1	712	89	2	2237	26	24	23	25	2.00
12326515--12326567	26	2.0	26	96	0	97	28	26	18	26	1.98
12327247--12327299	26	2.0	26	92	0	88	26	18	22	32	1.97
12326435--12327873	723	2.0	726	87	2	2093	27	23	23	25	2.00
12328128--12328182	26	2.1	27	86	10	78	23	21	21	32	1.98
12328922--12329147	120	1.9	120	90	1	364	16	33	29	20	1.95
12327437--12329028	883	1.8	872	89	1	2189	27	24	22	25	2.00
12329979--12330057	26	3.0	26	96	0	149	26	25	20	27	1.99
12330031--12331429	710	2.0	710	88	2	2083	27	23	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12331587--12331637	26	2.0	26	100	0	102	29	27	15	27	1.96
12330742--12333077	869	2.7	881	85	5	3051	25	23	24	25	2.00
12332487--12332539	26	2.0	26	96	0	97	26	24	20	28	1.99
12333912--12333962	26	2.0	26	96	0	93	25	25	19	29	1.99
12336607--12336659	26	2.0	26	88	0	79	32	28	15	24	1.95
12338190--12338566	159	2.4	159	82	1	425	18	29	28	23	1.98
12338540--12338592	26	2.0	26	96	0	97	28	26	18	26	1.98
12341122--12341174	26	2.0	26	92	0	88	28	22	20	28	1.99
12342006--12342056	26	2.0	26	88	0	75	31	17	17	33	1.94
12342908--12342958	26	2.0	26	92	0	84	31	23	15	29	1.95
12339094--12349448	903	11.6	888	83	5	12117	25	24	24	25	2.00
12345576--12345627	25	2.0	26	96	3	97	30	25	17	26	1.97
12346466--12346518	26	2.0	26	88	0	79	28	20	20	30	1.98
12347372--12347423	26	2.0	25	88	3	77	30	25	17	26	1.97
12347591--12347622	12	2.7	12	95	0	55	9	28	18	43	1.81
12348262--12348314	26	2.0	26	92	0	88	28	24	20	26	1.99
12349165--12349214	26	1.9	26	87	0	73	18	24	24	34	1.96
12352164--12352682	258	2.0	260	91	0	853	21	25	28	25	1.99
12353057--12353274	116	1.9	116	81	0	265	24	24	28	22	1.99
12355142--12355194	26	2.0	26	92	0	88	28	24	20	26	1.99
12356039--12356091	26	2.0	26	88	0	79	26	24	20	28	1.99
12353156--12361256	904	9.1	900	86	3	10461	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12356908--12356958	26	2.0	26	96	0	93	29	27	13	29	1.94
12357809--12357861	26	2.0	26	88	0	79	24	22	22	30	1.99
12360456--12360507	26	2.0	26	100	0	104	23	23	23	30	1.99
12360482--12365455	706	7.0	713	87	2	6686	26	24	23	25	2.00
12364724--12364749	4	6.5	4	100	0	52	0	73	26	0	0.84
12365662--12367153	719	2.1	717	89	0	2232	26	23	22	26	2.00
12367257--12367309	26	2.0	26	92	0	88	26	26	16	30	1.97
12366388--12369851	902	3.8	903	88	1	4995	25	24	24	25	2.00
12369091--12371279	717	3.1	715	87	3	3154	26	24	23	25	2.00
12371383--12371435	26	2.0	26	96	0	97	26	24	20	28	1.99
12371409--12373592	715	3.0	711	86	3	3017	26	23	22	26	2.00
12374407--12374775	159	2.3	159	82	0	443	20	27	28	23	1.99
12374749--12374801	26	2.0	26	85	0	70	26	20	22	30	1.98
12374775--12380158	899	6.0	876	83	6	6450	25	24	24	25	2.00
12378311--12378362	26	2.0	26	92	0	86	25	26	19	28	1.98
12379212--12379264	26	2.0	26	92	0	88	28	28	16	26	1.97
12380135--12380210	26	2.9	26	92	0	125	23	25	19	31	1.98
12380349--12380398	26	1.9	26	91	0	82	26	22	22	30	1.99
12379982--12380393	211	2.0	211	85	0	554	21	26	26	24	2.00
12381249--12381301	26	2.0	26	88	0	79	30	22	18	28	1.98
12380183--12382916	904	3.0	901	85	3	3653	25	24	23	25	2.00
12384234--12384284	26	2.0	26	92	0	84	29	23	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12385094--12385172	26	3.0	26	92	0	131	27	22	18	30	1.98
12385153--12386548	718	1.9	718	90	1	2217	26	23	23	26	2.00
12388558--12388610	26	2.0	26	89	7	81	32	24	16	26	1.97
12390360--12390412	26	2.0	26	96	0	97	26	28	20	24	1.99
12385867--12396772	901	12.0	900	77	10	9286	25	24	23	25	2.00
12392123--12392175	26	2.0	26	96	0	97	26	24	20	28	1.99
12393025--12393075	26	2.0	26	96	0	93	25	29	21	23	1.99
12393056--12393413	185	1.9	185	88	0	536	17	22	35	24	1.95
12394114--12394166	26	2.0	26	96	0	97	26	24	20	28	1.99
12394589--12394645	25	2.2	26	81	6	62	63	10	5	21	1.46
12395844--12395896	26	2.0	26	96	0	97	28	26	18	26	1.98
12396734--12397106	185	2.0	185	89	3	563	17	23	35	23	1.95
12397807--12397859	26	2.0	26	96	0	97	26	24	20	28	1.99
12397833--12399295	717	2.0	716	87	2	2110	26	24	22	26	2.00
12399426--12399478	26	2.0	26	88	0	79	30	28	16	24	1.97
12401858--12401923	26	2.5	26	97	0	123	28	25	18	27	1.98
12402591--12403418	418	2.0	419	81	2	966	20	26	30	23	1.98
12404059--12404111	26	2.0	26	88	0	79	30	24	16	28	1.97
12404958--12405010	26	2.0	26	88	0	79	28	22	18	30	1.98
12403190--12405639	896	2.7	894	88	2	3676	26	24	23	25	2.00
12406682--12408769	723	2.9	716	89	1	3162	27	24	22	25	2.00
12408862--12408934	26	2.8	25	93	4	119	24	23	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12410505--12410557	26	2.0	26	92	0	88	30	24	18	26	1.98
12410531--12411998	706	2.1	704	89	2	2257	27	23	22	25	2.00
12412102--12412154	26	2.0	26	92	0	88	33	26	15	24	1.95
12412128--12414150	708	2.8	702	87	3	2836	27	24	22	25	2.00
12414425--12415836	726	1.9	724	88	1	2105	26	23	22	26	2.00
12416021--12416073	26	2.0	26	85	7	72	24	24	20	30	1.99
12416418--12416778	180	2.0	183	89	2	557	39	17	17	25	1.92
12418547--12418599	26	2.0	26	96	0	97	26	26	18	28	1.98
12420335--12420387	26	2.0	26	92	0	88	28	24	20	26	1.99
12417682--12426578	890	10.0	896	85	5	10969	25	24	24	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131