genome.fa.s2.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  27  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6400867--6401024	86	1.8	86	90	0	253	22	20	14	42	1.88
6403017--6403294	57	4.9	57	81	9	261	48	5	10	35	1.60
6403054--6403260	111	1.9	110	84	3	281	47	6	9	36	1.62
6403046--6403301	57	4.5	59	82	8	262	46	5	10	37	1.63
6411979--6412010	9	3.7	9	91	8	57	81	0	0	18	0.70
6411987--6412031	21	2.1	21	87	0	63	80	0	4	15	0.87
6411979--6412009	8	3.8	8	95	4	53	80	0	0	19	0.71
6412601--6412640	21	1.9	21	85	10	55	80	0	15	5	0.88
6413290--6413521	51	4.5	51	78	7	204	32	9	13	44	1.75
6413382--6413489	54	2.0	53	85	1	144	27	8	14	49	1.72
6413348--6413542	103	1.9	105	79	4	225	31	8	14	45	1.75
6413500--6413606	49	2.2	49	86	0	142	29	5	18	45	1.72
6413576--6413689	41	2.8	41	74	20	112	30	11	15	42	1.83
6415412--6415455	16	2.4	19	85	14	58	70	0	18	11	1.16
6421698--6421744	13	3.8	12	78	13	51	70	2	0	27	0.99
6421697--6421743	6	7.7	6	83	11	60	70	2	0	27	0.99
6421864--6421901	12	3.1	13	85	11	53	36	0	63	0	0.95
6426231--6426286	23	2.3	23	78	6	58	35	5	0	58	1.21
6428394--6428442	24	2.0	24	84	7	64	40	2	0	57	1.10
6429808--6430076	65	4.3	63	75	12	221	37	13	9	39	1.77
6429808--6430076	62	4.3	62	73	13	203	37	13	9	39	1.77
6430816--6431038	111	2.0	111	85	1	304	38	19	11	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6436581--6436614	15	2.3	15	89	0	50	38	0	0	61	0.96
6437807--6437913	52	2.1	52	91	7	173	36	14	16	32	1.89
6440099--6440151	23	2.3	24	87	6	74	35	5	1	56	1.34
6443132--6443181	19	2.6	19	80	3	55	72	0	8	20	1.10
6443211--6443244	17	1.9	18	88	5	52	73	2	0	23	0.97
6445664--6445709	22	2.1	22	84	11	60	30	8	8	52	1.62
6449247--6449277	7	4.4	7	91	0	53	58	9	0	32	1.31
6449959--6450011	22	2.3	22	75	15	54	32	7	0	60	1.25
6450677--6450714	16	2.3	17	90	4	60	73	5	2	18	1.14
6452157--6452219	19	3.2	19	72	24	67	65	3	7	23	1.34
6452156--6452240	40	2.1	40	95	0	152	65	2	10	21	1.34
6452176--6452240	21	3.2	21	68	24	57	66	1	12	20	1.32
6452321--6452366	23	2.0	23	83	8	58	73	0	6	19	1.04
6454064--6454209	76	1.9	76	88	0	220	28	17	28	26	1.97
6456944--6456984	21	2.0	21	90	0	64	29	14	39	17	1.89
6457563--6457612	25	2.0	25	81	14	59	10	2	12	76	1.11
6458462--6458595	56	2.4	55	75	12	148	30	14	26	28	1.95
6459720--6459750	9	3.4	9	95	0	53	29	22	9	38	1.86
6462823--6463055	129	1.8	129	83	1	315	26	18	14	40	1.89
6466878--6466979	30	3.4	29	85	6	123	53	0	5	39	1.32
6472054--6472092	14	2.7	15	84	15	55	84	12	2	0	0.72
6472050--6472114	23	2.7	23	81	11	76	84	9	1	4	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6474155--6474228	29	2.6	29	87	4	98	29	5	9	55	1.54
6474748--6474786	20	2.0	20	85	5	53	66	0	0	33	0.92
6475575--6475608	6	5.7	6	89	0	50	14	64	2	17	1.40
6481484--6481514	2	15.5	2	100	0	62	0	48	0	51	1.00
6489605--6489634	2	15.0	2	100	0	60	50	0	50	0	1.00
6503899--6503929	15	2.1	15	100	0	62	19	12	6	61	1.53
6506571--6506612	21	2.0	21	100	0	84	38	4	19	38	1.73
6506891--6506944	12	4.4	12	90	2	81	50	11	18	20	1.77
6506891--6506945	24	2.2	25	93	6	103	49	10	20	20	1.78
6509403--6509429	11	2.5	11	100	0	54	29	0	14	55	1.40
6510007--6510199	97	2.0	97	86	0	269	37	9	19	33	1.84
6515746--6515774	14	2.0	15	93	6	51	65	0	13	20	1.26
6516261--6516452	32	5.7	32	70	11	114	50	11	18	19	1.78
6516237--6516435	106	1.9	106	82	0	254	48	12	18	20	1.80
6516571--6516694	33	3.7	33	70	12	92	50	12	17	19	1.77
6517859--6517919	15	4.1	15	75	14	54	9	21	1	67	1.29
6518233--6518266	17	2.0	17	94	0	59	11	26	0	61	1.30
6525917--6526011	38	2.5	38	84	8	122	37	9	7	45	1.65
6529011--6529039	12	2.3	13	94	5	51	31	6	0	62	1.22
6529916--6530016	6	16.8	6	96	0	148	67	9	0	22	1.20
6530016--6530083	6	11.3	6	96	0	91	26	0	7	66	1.18
6533162--6533187	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6537293--6537320	1	28.0	1	100	0	56	0	0	0	100	0.00
6541408--6541440	4	8.2	4	93	0	57	72	0	3	24	0.98
6541599--6541655	26	2.3	25	82	8	71	52	3	8	35	1.50
6541650--6541688	14	2.7	15	84	4	53	64	5	2	28	1.28
6541785--6541818	11	3.1	11	82	0	50	70	5	2	20	1.21
6551252--6551288	19	1.9	19	88	0	56	56	21	0	21	1.42
6555595--6555665	5	14.4	5	73	16	51	18	2	5	73	1.16
6555596--6555692	14	7.1	14	66	13	60	19	3	5	72	1.18
6555649--6555708	27	2.1	29	85	11	81	25	1	5	68	1.19
6559209--6559406	56	3.7	54	80	9	228	50	12	19	18	1.78
6559225--6559440	107	2.0	104	82	8	252	50	12	18	18	1.78
6559210--6559439	56	4.2	56	77	10	176	53	11	17	17	1.73
6560578--6560835	114	2.3	115	76	4	263	22	26	13	37	1.91
6560922--6561125	69	2.9	68	76	5	187	30	18	9	41	1.82
6561060--6561340	155	1.8	155	80	7	347	32	18	12	36	1.88
6561689--6561924	120	2.0	120	83	3	305	19	24	16	40	1.91
6566958--6567884	187	5.0	186	80	3	1045	41	10	11	36	1.77
6566624--6567884	374	3.4	370	85	4	1567	41	10	11	35	1.76
6566624--6567928	561	2.4	547	83	4	1591	41	10	11	35	1.77
6578592--6578619	2	14.0	2	100	0	56	50	0	0	50	1.00
6579643--6579667	3	8.3	3	100	0	50	64	0	0	36	0.94
6582954--6582988	18	1.9	18	88	0	52	11	37	11	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6589524--6589563	2	20.0	2	84	0	53	42	2	5	50	1.37
6590063--6590115	24	2.2	25	83	10	74	56	1	3	37	1.28
6590995--6591034	18	2.2	18	86	13	55	15	5	2	77	1.04
6591000--6591053	14	3.7	14	83	14	65	16	1	3	77	1.00
6591000--6591053	5	11.0	5	74	18	51	16	1	3	77	1.00
6591398--6591537	37	3.8	37	83	0	163	45	11	9	34	1.72
6594990--6595056	24	2.6	25	86	11	84	74	0	16	8	1.05
6595336--6595365	15	1.9	16	93	6	53	86	6	0	6	0.70
6596503--6596541	18	2.2	18	86	4	53	30	20	20	28	1.98
6596516--6596575	17	3.5	17	74	14	52	30	18	18	33	1.95
6596412--6596595	86	2.1	86	79	2	217	30	19	13	35	1.91
6597926--6597980	16	3.3	18	76	16	57	16	0	5	78	0.93
6597934--6597997	9	7.3	9	74	25	50	18	1	3	76	1.00
6597926--6597984	15	3.6	17	80	13	63	16	0	5	77	0.93
6597958--6598006	20	2.5	20	80	16	57	18	4	2	75	1.06
6598141--6598184	16	2.8	16	100	0	88	34	0	6	59	1.24
6600339--6600393	20	2.8	20	72	5	60	36	0	10	52	1.37
6608563--6608600	2	19.0	2	88	0	58	44	0	5	50	1.24
6613242--6613279	20	1.9	20	94	0	67	47	7	15	28	1.74
6613408--6613434	12	2.2	12	100	0	54	51	0	0	48	1.00
6614222--6614274	22	2.3	23	75	15	65	58	0	0	41	0.98
6621283--6621339	25	2.3	25	87	6	80	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6621547--6621590	22	1.9	23	81	9	54	52	2	4	40	1.34
6624027--6624236	112	1.9	111	80	4	244	47	5	12	34	1.65
6624832--6624866	18	2.0	18	88	5	54	45	0	2	51	1.16
6627701--6627735	17	2.1	17	88	0	52	37	8	17	37	1.80
6636199--6636235	14	2.5	16	79	20	53	5	0	13	81	0.86
6653575--6653600	1	26.0	1	100	0	52	0	0	0	100	0.00
6673271--6673344	36	2.1	36	92	0	121	52	9	8	29	1.62
6676619--6676784	4	41.2	4	69	18	64	28	3	2	66	1.19
6676596--6676674	15	5.2	15	69	17	56	20	1	5	73	1.09
6676596--6676671	39	2.0	38	82	7	91	19	1	5	73	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131