genome.fa.s2.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  18  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4506122--4506180	31	1.9	31	82	6	75	45	5	1	47	1.34
4506156--4506201	19	2.4	19	85	7	67	43	4	0	52	1.21
4506266--4506325	15	4.0	15	77	14	70	46	0	0	53	1.00
4506251--4506314	30	2.1	30	82	5	76	57	0	0	42	0.98
4507209--4507234	7	3.7	7	100	0	52	11	0	0	88	0.52
4511432--4511685	127	2.0	126	88	5	379	44	15	18	20	1.86
4514489--4514513	11	2.3	11	100	0	50	44	8	8	40	1.63
4516219--4516248	12	2.4	13	88	11	53	66	0	0	33	0.92
4516562--4516605	22	2.0	23	86	4	63	72	2	6	18	1.17
4516765--4516877	32	3.6	32	75	2	120	46	7	5	40	1.54
4516880--4516933	28	1.9	28	85	7	74	55	1	0	42	1.10
4517083--4517126	21	2.1	21	82	0	52	54	0	0	45	0.99
4517948--4518006	27	2.2	28	82	14	79	52	0	3	44	1.17
4524805--4524850	19	2.4	19	82	10	58	45	6	0	47	1.28
4524837--4524882	22	2.1	21	84	4	56	52	2	2	43	1.25
4526091--4526125	15	2.3	15	90	0	52	40	5	0	54	1.24
4535807--4535832	12	2.2	12	100	0	52	15	0	61	23	1.33
4536230--4536315	25	3.1	29	67	26	78	33	0	1	65	1.01
4536231--4536319	4	21.2	4	71	19	58	32	0	1	66	0.99
4559876--4560127	59	4.3	59	80	10	259	37	9	5	47	1.59
4559948--4560117	61	2.8	59	86	10	238	38	10	5	45	1.60
4562702--4563179	84	5.6	84	82	4	448	47	18	12	22	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4562677--4563179	44	11.8	43	78	8	408	46	18	12	22	1.82
4562691--4563135	128	3.5	124	80	7	448	47	18	11	22	1.81
4563096--4563223	42	3.0	42	82	4	141	46	16	14	21	1.83
4562701--4563221	128	4.1	129	78	8	365	47	17	12	22	1.81
4563493--4563524	16	2.0	16	93	0	55	43	18	15	21	1.87
4564259--4564315	8	7.0	8	84	11	71	12	3	0	84	0.75
4564258--4564314	9	6.8	9	84	11	68	10	3	0	85	0.70
4564258--4564314	17	3.4	17	82	2	80	10	3	0	85	0.70
4564259--4564313	24	2.2	24	90	3	83	10	3	0	85	0.72
4574748--4574803	19	2.9	19	87	7	78	41	7	8	42	1.63
4579230--4579260	16	1.9	16	93	0	53	67	0	3	29	1.06
4579229--4579285	28	2.0	28	82	0	69	64	1	1	31	1.13
4593039--4593091	20	2.6	20	75	19	56	43	1	0	54	1.11
4593039--4593091	19	2.7	20	74	14	56	43	1	0	54	1.11
4597339--4597380	3	14.0	3	94	0	75	33	30	0	35	1.58
4599918--4599947	13	2.2	14	94	5	53	43	3	6	46	1.46
4612158--4612248	24	3.8	24	84	8	107	43	1	0	54	1.07
4612158--4612253	12	8.1	12	68	6	61	42	1	0	56	1.06
4612412--4612474	23	2.6	23	80	12	65	41	6	0	52	1.27
4613540--4613621	28	2.8	28	85	7	92	48	4	1	45	1.31
4613724--4613753	14	2.1	14	93	0	51	50	3	0	46	1.18
4615208--4615365	78	2.0	80	90	5	248	48	4	5	42	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4615670--4615934	144	1.8	144	82	6	340	31	12	12	43	1.80
4617215--4617265	13	4.0	13	78	12	61	68	1	0	29	1.00
4620776--4620800	2	12.5	2	100	0	50	48	0	0	52	1.00
4625567--4625599	17	1.9	17	93	0	57	45	9	6	39	1.61
4627921--4627975	22	2.7	19	81	15	65	45	0	0	54	0.99
4627924--4627975	21	2.5	22	90	6	81	46	0	0	53	1.00
4627992--4628031	19	2.0	19	85	9	53	65	0	2	32	1.06
4629589--4629635	24	2.0	24	95	0	85	17	12	34	36	1.87
4637093--4637122	2	15.0	2	100	0	60	50	0	0	50	1.00
4641506--4641600	28	3.4	28	77	13	74	41	4	0	54	1.20
4641632--4641706	30	2.5	30	78	4	80	49	1	5	44	1.33
4641715--4641770	29	1.9	29	85	0	76	51	1	8	37	1.44
4653000--4653056	26	2.2	26	93	3	98	61	10	14	14	1.57
4658089--4658123	12	3.0	11	88	12	52	0	31	0	68	0.90
4661584--4661623	21	1.9	21	85	10	55	40	0	10	50	1.36
4664362--4664386	13	1.9	13	100	0	50	44	0	0	56	0.99
4665699--4665766	32	2.1	32	83	0	82	50	0	4	45	1.22
4667023--4667070	22	2.1	23	85	11	64	39	0	2	58	1.10
4667991--4668037	23	2.0	23	87	4	67	53	10	17	19	1.72
4680088--4680169	35	2.4	35	79	6	96	48	1	2	47	1.22
4680155--4680191	19	1.9	19	88	0	56	43	0	0	56	0.99
4681997--4682046	12	4.1	12	87	10	57	78	2	20	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4682009--4682046	4	9.2	4	88	5	58	76	0	23	0	0.79
4689251--4689317	27	2.5	27	82	0	80	29	1	0	68	0.98
4690009--4690042	12	2.9	12	91	4	52	0	44	0	55	0.99
4692019--4692047	5	6.0	5	96	4	51	20	41	20	17	1.90
4693269--4693299	3	10.3	3	100	0	62	32	0	0	67	0.91
4704232--4704257	2	13.0	2	100	0	52	50	0	0	50	1.00
4707484--4707540	22	2.6	23	80	5	64	40	0	14	45	1.44
4712436--4712460	11	2.3	11	100	0	50	36	8	8	48	1.62
4712896--4712953	25	2.3	25	78	3	62	50	1	6	41	1.39
4713942--4713991	15	3.2	15	80	13	57	68	0	0	32	0.90
4715009--4715033	3	8.3	3	100	0	50	32	0	0	68	0.90
4715082--4715113	3	10.7	3	100	0	64	68	31	0	0	0.90
4715112--4715155	3	14.7	3	100	0	88	68	0	0	31	0.90
4729557--4729644	34	2.6	34	78	10	99	30	12	20	36	1.90
4729557--4729678	34	3.6	33	76	12	95	31	13	18	36	1.89
4737462--4737734	126	2.2	126	78	3	298	37	10	10	40	1.75
4745154--4745208	18	3.2	18	70	15	53	21	3	21	52	1.62
4745144--4745208	33	2.0	33	90	0	103	21	3	21	53	1.59
4748551--4749387	306	2.7	303	80	5	920	37	14	11	36	1.82
4752599--4752652	24	2.3	22	81	12	63	59	0	1	38	1.08
4752865--4752922	18	3.1	19	69	16	57	62	5	27	5	1.38
4753541--4753577	18	2.1	18	95	5	67	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4753541--4753577	6	6.3	6	85	14	51	67	0	0	32	0.91
4753618--4753648	11	2.8	11	90	0	53	54	0	9	35	1.33
4753763--4753803	21	1.9	22	90	5	66	46	4	0	48	1.23
4753761--4753816	22	2.4	23	76	5	60	42	3	0	53	1.18
4753800--4753846	24	2.0	24	83	8	60	31	2	0	65	1.04
4755835--4755873	19	2.1	19	85	0	51	38	12	23	25	1.90
4756902--4756977	38	2.0	37	94	2	134	43	6	0	50	1.28
4758103--4758136	2	17.5	2	93	6	61	50	0	0	50	1.00
4763590--4763632	20	2.1	20	83	12	52	37	4	0	58	1.19
4765257--4765318	26	2.4	26	81	13	74	50	0	0	50	1.00
4765315--4765366	22	2.4	21	77	20	54	48	0	0	51	1.00
4765332--4765376	20	2.2	20	80	7	56	51	2	0	46	1.13
4766119--4766161	21	2.0	21	86	0	59	53	2	37	6	1.41
4770178--4770202	4	6.2	4	100	0	50	48	52	0	0	1.00
4771225--4771274	15	3.2	16	78	13	52	70	4	6	20	1.25
4772395--4772419	2	12.5	2	100	0	50	48	0	0	52	1.00
4772551--4772684	17	8.1	17	65	24	54	24	6	1	67	1.24
4772533--4772637	32	3.3	31	77	14	106	23	4	0	71	1.05
4772534--4772605	13	5.5	13	73	18	60	23	2	0	73	0.96
4772537--4772635	27	3.8	27	75	15	84	23	5	0	71	1.05
4772566--4772622	30	1.9	30	85	7	80	22	5	0	71	1.05
4772630--4772692	29	2.2	29	94	2	110	23	7	3	65	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4772988--4773031	15	3.2	13	78	15	52	20	2	11	65	1.35
4773590--4773655	21	3.0	23	80	12	68	21	1	0	77	0.85
4773594--4773651	5	11.8	5	76	23	61	18	1	0	79	0.82
4773591--4773654	29	2.2	30	91	5	105	18	1	0	79	0.81
4773670--4773885	60	3.7	58	87	9	296	43	6	13	36	1.70
4773670--4773885	119	1.8	118	90	6	348	43	6	13	36	1.70
4777781--4777836	30	2.0	30	86	10	82	73	0	17	8	1.08
4779248--4779329	43	1.9	43	87	7	123	36	10	15	36	1.83
4779613--4780254	83	7.6	83	83	5	587	24	15	21	38	1.92
4779643--4780254	42	14.4	42	82	6	551	24	15	21	38	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131