Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  16  of  131  ( 15626 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3991375--3991465
42
2.2
41
80
11
96
69
5
5
19
1.29
3991563--3991648
11
7.0
12
78
13
70
76
1
4
17
1.01
3991559--3991622
29
2.2
29
83
5
76
79
0
3
17
0.85
3991563--3991648
6
14.0
6
72
18
70
76
1
4
17
1.01
3991563--3991622
17
3.6
17
78
8
61
80
0
3
16
0.85
3991866--3992221
41
8.6
41
87
3
455
38
20
16
24
1.92
3992511--3992593
43
2.0
42
90
7
132
34
15
9
39
1.80
3993940--3993994
12
4.9
11
72
18
51
7
18
0
74
1.04
3993932--3993994
21
2.9
21
76
17
65
7
19
0
73
1.08
3993917--3993983
14
4.9
14
72
26
54
7
17
0
74
1.04
3993940--3993990
24
2.2
24
89
3
77
5
15
0
78
0.93
3997852--3997943
27
3.3
26
68
26
71
38
13
5
43
1.66
3997938--3997976
16
2.4
16
86
4
51
41
0
7
51
1.31
3997853--3998129
60
4.7
59
86
4
362
36
10
6
46
1.65
3997853--3998130
118
2.3
118
85
4
382
35
10
6
46
1.65
3998146--3998222
6
14.8
5
74
17
61
79
2
3
14
0.99
3998145--3998215
32
2.3
32
88
9
103
78
2
4
14
1.01
3998146--3998222
27
2.7
28
82
8
84
79
2
3
14
0.99
3998146--3998222
11
6.8
11
81
11
77
79
2
3
14
0.99
3998145--3998227
33
2.7
30
76
23
91
77
3
6
13
1.09
3999295--3999387
5
17.0
5
76
22
73
75
1
4
19
1.03
3999295--3999387
11
8.5
10
73
25
73
75
1
4
19
1.03
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3999302--3999398
22
4.5
21
74
20
76
75
1
6
17
1.07
3999792--3999910
56
2.2
54
85
8
152
38
21
1
37
1.64
4000534--4000562
2
14.5
2
100
0
58
48
0
0
51
1.00
4000869--4000900
16
2.0
16
100
0
64
25
0
18
56
1.42
4004087--4004133
21
2.2
21
78
14
53
44
2
0
53
1.12
4004091--4004153
24
2.7
24
76
16
60
42
3
0
53
1.16
4007335--4007442
24
4.5
24
95
0
189
11
38
24
25
1.88
4007335--4007465
48
2.7
48
86
2
129
13
35
24
25
1.93
4007536--4007585
24
2.1
24
84
0
64
14
28
18
40
1.89
4013322--4013365
22
2.0
22
86
0
61
34
9
11
45
1.72
4017806--4017832
2
13.5
2
100
0
54
0
51
0
48
1.00
4018114--4018141
2
14.0
2
100
0
56
50
0
0
50
1.00
4018890--4018919
14
2.1
14
100
0
60
30
13
23
33
1.93
4029460--4029495
17
2.1
17
94
0
63
0
0
83
16
0.65
4029651--4029697
23
2.1
22
84
11
60
27
0
6
65
1.16
4029661--4029714
22
2.4
22
84
9
65
29
0
5
64
1.16
4030895--4030919
12
2.1
12
100
0
50
16
20
16
48
1.82
4031045--4031071
13
2.1
13
100
0
54
25
29
14
29
1.95
4032708--4032755
15
3.3
14
75
11
51
33
4
16
45
1.67
4034332--4034510
95
1.9
95
86
3
254
36
7
12
43
1.72
4035826--4035855
14
2.1
15
93
6
53
50
0
10
40
1.36
4049670--4049719
14
3.8
13
82
10
57
66
0
2
32
1.03
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4049676--4049721
7
6.6
7
80
9
58
65
0
2
32
1.05
4049676--4049721
21
2.2
21
88
7
67
65
0
2
32
1.05
4055673--4055811
65
2.2
63
79
12
149
33
9
12
43
1.75
4055688--4055810
65
1.9
65
83
9
162
32
9
11
46
1.73
4062109--4062250
68
2.1
68
98
1
275
34
2
9
53
1.47
4062744--4062768
2
12.5
2
100
0
50
0
48
0
52
1.00
4070169--4070230
31
2.0
31
100
0
124
32
16
29
22
1.95
4078481--4078860
190
2.0
190
95
0
688
32
12
30
24
1.92
4078843--4078896
21
2.6
21
100
0
108
22
11
37
29
1.89
4079059--4079292
116
2.0
116
99
0
459
29
8
20
41
1.82
4081491--4081542
9
5.7
9
77
4
59
25
1
21
51
1.57
4081867--4081919
20
2.6
21
82
14
67
33
24
26
15
1.95
4082684--4082783
8
12.5
8
96
0
101
18
6
32
44
1.74
4082685--4082746
16
3.9
16
97
0
115
12
9
37
40
1.77
4082685--4082746
24
2.6
24
97
0
115
12
9
37
40
1.77
4082741--4082783
12
3.6
12
100
0
86
25
0
25
48
1.51
4082741--4082930
95
2.0
95
89
0
290
19
10
18
51
1.74
4084551--4085025
239
2.0
237
90
3
749
33
16
12
38
1.85
4088308--4088341
2
17.0
2
100
0
68
50
0
0
50
1.00
4092607--4092639
2
16.5
2
100
0
66
0
48
0
51
1.00
4094793--4094817
1
25.0
1
100
0
50
0
0
0
100
0.00
4098877--4098909
2
16.5
2
100
0
66
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4107301--4107331
6
5.2
6
100
0
62
16
32
0
51
1.44
4108059--4108092
2
17.0
2
100
0
68
0
50
0
50
1.00
4110186--4110326
54
2.6
55
82
4
160
37
9
5
47
1.59
4110432--4110475
16
2.8
16
86
3
63
54
13
0
31
1.39
4122753--4122784
16
1.9
17
93
6
57
9
15
18
56
1.66
4126670--4126922
127
2.0
127
88
1
373
44
13
3
38
1.62
4126897--4126924
2
14.0
2
100
0
56
50
0
0
50
1.00
4130488--4130588
42
2.3
43
89
5
150
16
18
24
39
1.91
4130560--4130732
36
4.8
35
77
7
125
16
16
23
44
1.86
4130756--4130840
36
2.4
36
93
0
143
10
22
22
44
1.83
4134899--4134935
11
3.1
12
88
11
58
64
0
0
35
0.94
4135150--4135199
26
1.9
26
84
8
66
26
0
2
72
0.96
4136893--4136935
20
2.2
20
83
8
52
46
0
0
53
1.00
4137745--4137778
15
2.2
16
89
5
52
47
0
0
52
1.00
4139422--4139498
30
2.5
30
83
6
93
45
10
6
37
1.64
4139639--4139686
18
2.6
19
80
6
53
45
6
0
47
1.27
4139654--4139696
19
2.5
17
82
14
52
51
6
0
41
1.29
4139655--4139696
18
2.3
19
84
8
52
52
7
0
40
1.29
4155948--4155993
12
4.2
12
74
25
57
23
0
6
69
1.11
4155955--4155992
19
2.0
19
100
0
76
26
0
5
68
1.11
4156236--4156262
13
2.1
13
100
0
54
51
0
0
48
1.00
4157253--4157310
24
2.6
22
84
10
73
36
5
0
58
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4157249--4157304
24
2.3
24
93
3
94
39
5
0
55
1.23
4158038--4158084
3
15.7
3
89
8
69
27
2
0
70
0.99
4158032--4158081
24
2.1
24
100
0
100
24
4
0
72
1.02
4158119--4158166
6
8.5
6
88
6
66
16
2
0
81
0.79
4158102--4158164
29
2.2
27
83
13
74
19
3
1
76
1.01
4158194--4158470
58
4.8
58
85
6
355
42
6
12
37
1.68
4158210--4158470
118
2.2
115
85
5
346
42
6
13
37
1.69
4158522--4158561
16
2.6
16
88
4
55
7
10
2
80
1.00
4168953--4168982
10
3.0
10
95
0
51
90
0
6
3
0.56
4170006--4170120
42
2.8
41
84
2
149
29
13
18
38
1.89
4169998--4170121
41
3.0
41
80
2
158
29
14
20
35
1.93
4170170--4170225
19
3.0
19
82
12
71
33
3
0
62
1.12
4170161--4170258
31
3.2
31
74
15
78
34
4
0
61
1.15
4171019--4171063
21
2.1
22
87
4
65
13
17
24
44
1.85
4171130--4171154
10
2.5
10
100
0
50
8
0
0
92
0.40
4171157--4171394
58
4.1
58
77
10
245
42
6
12
39
1.69
4174014--4174049
2
18.0
2
100
0
72
50
0
0
50
1.00
4175428--4175455
2
14.0
2
100
0
56
50
0
0
50
1.00
4176873--4176905
17
1.9
17
93
0
57
60
0
0
39
0.97
4177132--4177188
23
2.5
22
76
15
62
29
3
3
63
1.28
4178159--4178200
21
2.0
21
90
9
68
26
4
4
64
1.33
4178161--4178224
21
2.9
21
81
11
58
34
1
3
60
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4178170--4178230
23
2.8
21
76
14
61
37
1
1
59
1.17
4179142--4179247
33
3.1
34
74
5
90
36
13
11
38
1.80
4179199--4179372
74
2.3
74
80
7
174
42
8
13
35
1.75
4186062--4186089
7
4.0
7
100
0
56
14
0
0
85
0.59
4186724--4186964
123
2.0
123
99
0
475
39
11
10
38
1.76
4187555--4187579
13
1.9
13
100
0
50
64
0
0
36
0.94
4187553--4187586
14
2.5
13
85
4
50
64
0
0
35
0.94
4187561--4187590
15
2.0
15
93
0
51
70
0
0
30
0.88
4190750--4190789
20
2.0
20
85
14
55
57
0
0
42
0.98
4191000--4191048
24
2.1
23
84
3
62
71
2
0
26
0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131