genome.fa.s2.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  87  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15714855--15715377	158	3.3	158	93	0	895	18	26	30	24	1.98
15716202--15716280	26	3.0	26	96	0	149	31	25	16	26	1.96
15716976--15720338	886	3.8	892	86	3	4504	26	24	23	25	2.00
15719631--15719683	26	2.0	26	85	0	70	28	28	18	24	1.98
15719709--15720987	649	2.0	650	91	1	2071	27	23	23	26	2.00
15721174--15721224	26	2.0	26	100	0	102	25	27	19	27	1.99
15720367--15722392	903	2.3	891	88	2	2995	24	25	24	25	2.00
15722714--15722766	26	2.0	26	96	0	97	28	26	18	26	1.98
15721762--15723029	637	2.0	632	87	2	1842	21	27	26	24	1.99
15724459--15724511	26	2.0	26	92	0	88	28	28	16	26	1.97
15725356--15725408	26	2.0	26	100	0	106	26	26	20	26	1.99
15723598--15729259	899	6.4	897	85	4	7306	25	25	23	25	2.00
15727131--15727183	26	2.0	26	92	0	88	28	24	20	26	1.99
15728013--15728064	26	2.0	26	96	0	95	32	26	13	26	1.94
15731530--15731574	10	4.4	10	83	5	63	2	17	0	80	0.82
15731530--15731573	21	2.1	21	91	0	70	2	15	0	81	0.78
15732386--15732414	13	2.1	14	93	6	51	48	20	0	31	1.50
15735321--15735372	21	2.5	21	100	0	104	69	7	7	15	1.35
15736317--15736344	7	4.0	7	100	0	56	28	0	0	71	0.86
15738777--15739024	33	7.8	32	72	11	132	33	24	12	30	1.91
15738724--15739202	191	2.5	191	77	7	470	32	22	12	31	1.92
15738732--15738958	33	7.2	31	71	12	111	33	22	12	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15738724--15739024	97	3.1	97	74	8	240	33	22	12	30	1.91
15738839--15739026	64	2.9	65	76	7	177	33	24	12	29	1.92
15739159--15739244	33	2.5	33	78	14	95	31	24	16	27	1.96
15739229--15739285	28	2.0	28	82	0	69	28	24	10	36	1.88
15739381--15739447	35	1.9	35	84	0	89	16	17	14	50	1.78
15739368--15739603	36	6.4	36	71	13	144	13	16	14	55	1.70
15739704--15739863	36	4.4	36	81	1	169	16	17	11	53	1.72
15739775--15739882	36	3.0	36	83	0	90	14	15	14	54	1.71
15739905--15740095	37	5.2	37	73	5	145	18	20	11	49	1.78
15740148--15740206	3	19.7	3	73	13	50	74	22	1	1	1.00
15740138--15740208	6	10.7	6	84	13	61	77	19	1	1	0.92
15740747--15741083	145	2.3	145	82	0	395	31	16	12	39	1.85
15744884--15744924	20	2.0	21	85	4	57	26	24	7	41	1.81
15753550--15753578	14	2.0	15	93	6	51	48	0	0	51	1.00
15754029--15754068	4	10.0	4	94	0	71	27	0	22	50	1.50
15754066--15754111	3	15.3	3	100	0	92	32	0	0	67	0.91
15758061--15758102	17	2.5	16	82	17	50	16	9	0	73	1.08
15764069--15764101	2	17.0	2	90	6	50	45	3	0	51	1.16
15764012--15764623	301	2.0	305	94	3	1072	42	9	5	42	1.61
15767607--15767632	2	13.0	2	100	0	52	50	0	0	50	1.00
15767691--15767734	19	2.3	19	88	4	61	31	0	2	65	1.05
15767691--15767734	20	2.2	20	88	4	63	31	0	2	65	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15767773--15767813	13	3.2	13	82	0	55	53	0	0	46	1.00
15768106--15768164	29	2.0	30	83	9	77	32	13	5	49	1.64
15768243--15768307	30	2.2	29	83	2	76	40	0	10	49	1.38
15776102--15776160	27	2.2	27	87	0	91	45	1	1	50	1.21
15777600--15777628	2	14.5	2	100	0	58	48	0	0	51	1.00
15784844--15784873	2	15.0	2	100	0	60	50	0	0	50	1.00
15786238--15786266	2	15.0	2	92	7	51	51	0	0	48	1.00
15786530--15786576	2	23.5	2	100	0	94	48	0	0	51	1.00
15787282--15787324	19	2.4	18	80	7	52	44	2	0	53	1.13
15787846--15787892	23	2.0	23	87	0	67	34	25	2	38	1.68
15788656--15788705	21	2.3	23	83	13	61	22	6	14	58	1.58
15789382--15789429	25	2.0	24	87	4	69	77	2	2	18	0.97
15790918--15790947	15	1.9	16	93	6	53	46	23	10	20	1.80
15793914--15793991	41	1.9	41	91	0	129	41	16	8	33	1.80
15794196--15794344	64	2.3	64	78	13	162	32	12	20	34	1.90
15794231--15794363	64	2.1	63	80	10	146	39	13	15	32	1.86
15794451--15794523	35	2.1	35	89	0	110	38	8	16	36	1.79
15797697--15797754	24	2.4	25	85	11	84	39	31	10	18	1.85
15797742--15797806	28	2.3	27	87	7	103	44	26	4	24	1.73
15799818--15799860	22	2.0	22	90	4	70	58	9	2	30	1.42
15799850--15799909	21	2.9	21	77	2	59	53	10	11	25	1.68
15808662--15808692	2	15.5	2	93	0	53	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15808661--15808695	10	3.4	10	88	4	52	57	0	0	42	0.99
15817729--15817761	2	17.0	2	93	6	59	51	0	0	48	1.00
15823147--15823177	16	1.9	16	93	0	53	67	0	22	9	1.19
15831381--15831558	20	8.9	19	71	16	112	41	38	0	19	1.56
15831380--15831597	7	32.7	7	70	18	144	43	37	0	18	1.54
15831402--15831619	13	16.8	13	72	14	132	44	36	0	17	1.53
15831402--15831597	33	5.9	33	74	8	103	43	36	0	18	1.55
15831568--15831602	18	1.9	18	94	0	61	51	40	0	8	1.33
15831568--15831629	30	2.1	30	87	6	90	51	40	0	8	1.31
15833994--15834852	258	3.3	255	80	6	896	37	8	16	37	1.79
15833994--15834839	130	6.6	129	78	6	750	36	8	16	37	1.80
15834006--15834824	388	2.1	386	80	7	901	37	8	16	37	1.79
15834755--15834916	76	2.1	77	82	3	193	34	10	17	37	1.85
15834827--15836565	129	13.4	129	76	8	1178	35	8	17	38	1.80
15834832--15836565	259	6.7	258	75	9	1138	35	8	17	38	1.80
15835974--15836458	260	1.9	258	80	9	576	36	8	16	38	1.78
15836671--15837492	130	6.3	129	78	7	743	36	8	16	38	1.79
15836671--15840050	260	13.1	257	74	8	2223	35	8	17	38	1.79
15837477--15837521	22	2.0	23	86	4	65	37	2	17	42	1.62
15837497--15837602	54	2.0	53	82	12	128	38	0	16	45	1.47
15837525--15840050	130	19.6	129	74	7	1593	35	8	17	38	1.80
15837558--15840084	257	9.8	254	73	9	1401	35	8	17	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15837532--15839597	645	3.2	636	74	8	1548	35	8	17	39	1.79
15840183--15840879	130	5.4	127	80	7	744	35	7	18	37	1.80
15840183--15840870	259	2.7	259	93	1	1132	36	7	18	37	1.80
15840959--15841598	238	2.7	235	83	4	786	37	6	16	39	1.74
15841318--15841469	54	2.8	55	75	17	140	38	3	16	40	1.67
15841393--15844752	130	26.1	127	71	11	1621	35	8	17	38	1.80
15841393--15844752	260	13.1	257	73	9	2069	35	8	17	38	1.80
15841408--15842612	129	9.3	130	75	7	600	35	8	17	38	1.80
15841393--15842194	388	2.1	388	80	5	897	36	8	17	37	1.80
15841393--15842612	517	2.4	513	80	6	1264	35	8	18	37	1.80
15844793--15845367	131	4.5	130	74	8	365	36	8	17	38	1.79
15844793--15846117	129	10.2	130	74	9	875	36	8	16	38	1.79
15844793--15846117	259	5.1	258	74	9	916	36	8	16	38	1.79
15844947--15846016	391	2.8	388	73	11	950	37	8	16	38	1.78
15846903--15847086	65	2.9	63	77	6	183	33	14	14	37	1.86
15849212--15849304	26	3.4	27	88	5	118	22	9	22	45	1.81
15849212--15849296	28	3.1	27	85	8	102	22	10	22	44	1.83
15849242--15849303	13	4.8	13	80	6	72	20	9	24	45	1.81
15851979--15852019	18	2.3	18	91	0	64	7	7	4	80	1.02
15851978--15852047	19	3.7	19	77	19	67	10	5	2	81	0.96
15851986--15852047	18	3.4	18	84	6	63	11	6	1	80	0.96
15851996--15852047	9	6.0	8	80	14	59	11	3	1	82	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15851977--15852049	38	1.9	38	86	5	103	9	5	2	82	0.93
15852282--15852331	18	2.7	19	87	9	77	30	12	20	38	1.88
15852312--15852380	35	2.0	35	82	5	86	36	14	18	30	1.91
15852357--15852408	17	3.1	17	75	8	52	38	19	15	26	1.91
15852328--15852494	52	3.2	52	77	3	158	33	17	17	31	1.94
15852501--15852540	17	2.4	17	86	0	53	50	15	10	25	1.74
15854342--15854374	16	2.1	16	94	0	57	30	15	21	33	1.94
15854772--15854797	3	8.7	3	100	0	52	34	0	30	34	1.58
15861845--15862051	80	2.6	80	87	3	283	37	15	14	32	1.88
15862728--15862934	108	1.9	109	80	3	238	15	19	15	49	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131