genome.fa.s2.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  65  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12671208--12671260	26	2.0	26	100	0	106	30	26	16	26	1.97
12672099--12672151	26	2.0	26	96	0	97	28	24	20	26	1.99
12673775--12673823	26	1.9	26	95	4	91	24	24	20	30	1.98
12673666--12676024	899	2.6	891	86	4	3221	25	24	24	25	2.00
12675609--12676433	409	2.0	411	88	3	1237	24	23	24	27	2.00
12676876--12676928	26	2.0	26	88	0	79	28	30	18	22	1.98
12678649--12678699	26	2.0	26	88	0	75	29	21	19	29	1.98
12680762--12680814	26	2.0	26	96	0	97	32	24	16	26	1.97
12681665--12681717	26	2.0	26	96	0	97	28	26	18	26	1.98
12680154--12682428	904	2.5	896	87	2	3289	26	24	22	25	2.00
12681691--12683066	706	1.9	706	88	2	2073	27	22	22	26	1.99
12683275--12683327	26	2.0	26	85	0	70	30	26	16	26	1.97
12682399--12684067	901	1.9	902	88	0	2563	26	24	23	26	2.00
12683305--12684769	719	2.0	717	90	1	2326	26	24	22	26	2.00
12685770--12685847	26	3.0	26	96	0	138	29	25	16	28	1.97
12686689--12686741	26	2.0	26	92	0	88	28	24	18	28	1.98
12684022--12687967	900	4.4	893	83	6	4724	25	25	23	25	2.00
12689338--12689390	26	2.0	26	96	0	97	32	26	15	26	1.95
12687964--12690093	886	2.4	893	86	2	2966	26	25	23	24	2.00
12689461--12690909	760	1.9	751	88	2	2206	27	23	23	24	2.00
12690984--12691034	26	2.0	26	88	0	75	25	25	15	33	1.95
12691184--12693865	713	3.9	704	82	7	2846	27	24	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12693304--12693356	26	2.0	26	96	0	97	28	24	20	26	1.99
12693969--12694021	26	2.0	26	88	0	79	26	22	22	28	1.99
12692720--12694057	665	2.0	666	87	2	1934	27	24	22	25	2.00
12694213--12694265	26	2.0	26	88	0	79	28	26	20	24	1.99
12695992--12696041	26	1.9	26	100	0	100	28	24	16	32	1.96
12694213--12696914	874	3.0	899	83	4	2866	25	24	23	25	2.00
12696698--12697074	159	2.4	160	84	2	456	18	32	27	21	1.97
12697048--12697100	26	2.0	26	96	0	97	26	28	20	24	1.99
12697594--12697646	26	2.0	26	92	0	88	28	22	20	28	1.99
12696992--12698086	546	2.0	545	87	2	1561	24	24	24	27	2.00
12700069--12700121	26	2.0	26	96	0	97	28	26	18	26	1.98
12700282--12701280	518	1.9	517	90	0	1593	30	22	19	27	1.98
12702375--12702425	26	2.0	26	84	0	66	27	25	17	29	1.98
12700798--12705803	893	5.7	890	81	8	5432	26	24	23	25	2.00
12705037--12707194	703	3.0	702	90	2	3237	26	23	22	26	2.00
12706453--12709354	899	3.2	898	88	2	4113	25	24	24	25	2.00
12710238--12710290	26	2.0	26	96	0	97	26	28	20	24	1.99
12709366--12717293	902	8.9	898	84	5	9712	25	24	23	25	2.00
12712051--12712103	26	2.0	26	96	0	97	26	24	20	28	1.99
12713837--12713891	26	2.1	27	93	3	94	21	27	18	32	1.96
12714701--12714753	26	2.0	26	88	0	79	24	22	24	28	2.00
12715584--12715634	26	2.0	26	92	0	84	27	21	19	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12716493--12716542	26	1.9	26	95	0	91	24	26	20	30	1.98
12714532--12717293	908	3.1	902	87	3	3932	24	24	24	25	2.00
12716519--12717998	713	2.1	709	88	3	2168	26	23	23	26	2.00
12718566--12718617	26	2.0	26	88	0	77	48	15	15	21	1.81
12717238--12730473	897	14.8	891	82	6	14521	26	24	23	25	2.00
12719892--12719944	26	2.0	26	100	0	106	26	26	20	26	1.99
12720778--12720830	26	2.0	26	100	0	106	26	26	20	26	1.99
12722526--12722580	26	2.1	27	86	10	78	21	23	21	32	1.98
12724297--12724347	26	2.0	26	92	0	84	25	27	19	27	1.99
12725199--12725277	26	3.0	26	94	0	140	26	24	21	27	1.99
12726138--12726190	26	2.0	26	96	0	97	26	26	18	28	1.98
12727924--12727976	26	2.0	26	100	0	106	26	26	20	26	1.99
12733620--12733672	26	2.0	26	92	0	88	30	26	16	26	1.97
12732754--12735319	907	2.9	887	84	6	3280	26	24	23	25	2.00
12734530--12734579	26	1.9	26	87	0	73	30	28	14	28	1.95
12734553--12736727	701	3.1	698	86	4	2969	26	23	22	26	2.00
12736856--12738956	706	3.0	705	88	2	2991	26	24	22	26	2.00
12739137--12739188	26	2.0	26	88	7	79	30	28	15	25	1.96
12743541--12743590	25	2.0	25	96	0	91	30	26	16	28	1.96
12742625--12748190	902	6.3	901	85	5	6967	25	24	24	25	2.00
12744889--12744945	26	2.2	26	83	0	69	59	8	5	26	1.48
12745316--12745368	26	2.0	26	92	7	90	30	26	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12744441--12748190	862	4.2	898	86	4	4870	25	24	24	25	2.00
12747991--12748043	26	2.0	26	96	0	97	28	26	18	26	1.98
12748777--12748829	26	2.0	26	88	0	79	26	22	22	28	1.99
12749675--12749727	26	2.0	26	92	0	88	28	24	18	28	1.98
12750505--12750557	26	2.0	26	96	0	97	26	28	20	24	1.99
12751409--12751461	26	2.0	26	100	0	106	26	26	20	26	1.99
12752306--12752358	26	2.0	26	100	0	106	26	26	20	26	1.99
12749770--12755233	895	6.1	894	84	3	6696	25	23	24	25	2.00
12754095--12754147	26	2.0	26	92	0	88	26	22	20	30	1.98
12754990--12755039	26	1.9	26	91	0	82	22	26	22	30	1.99
12755234--12755286	26	2.0	26	96	0	97	28	26	20	24	1.99
12754990--12755454	244	1.9	242	84	2	619	19	25	32	22	1.97
12756128--12756180	26	2.0	26	100	0	106	26	26	20	26	1.99
12756599--12757058	242	1.9	242	88	2	701	36	24	16	22	1.95
12757265--12757312	25	1.9	25	95	0	87	25	27	20	27	1.99
12760567--12760619	26	2.0	26	92	0	88	28	24	20	26	1.99
12760794--12760827	12	2.8	12	95	0	59	14	32	17	35	1.91
12758083--12762229	890	4.7	863	84	7	4826	25	25	23	25	2.00
12761473--12761525	26	2.0	26	88	0	79	28	22	18	30	1.98
12763114--12763164	26	2.0	26	96	0	93	27	27	15	29	1.96
12764906--12764958	26	2.0	26	88	0	79	22	24	24	28	2.00
12762193--12765860	904	4.1	899	87	2	5091	25	25	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12765810--12765860	26	2.0	26	92	0	84	23	29	17	29	1.97
12766126--12766178	26	2.0	26	88	0	79	32	26	16	24	1.97
12767021--12767073	26	2.0	26	92	0	88	26	24	18	30	1.98
12767049--12767996	475	2.0	477	85	3	1282	26	21	23	28	1.99
12768400--12768452	26	2.0	26	100	0	106	26	26	20	26	1.99
12768591--12768624	13	2.6	13	90	0	50	14	17	41	26	1.88
12769316--12769368	26	2.0	26	92	0	88	26	26	20	26	1.99
12770203--12770255	26	2.0	26	96	0	97	30	24	16	28	1.97
12767530--12771904	883	4.9	884	83	5	5029	26	24	23	25	2.00
12771082--12771158	26	3.0	26	84	0	109	27	25	16	29	1.97
12772101--12772593	262	1.9	260	87	2	729	33	18	17	31	1.94
12774616--12774668	26	2.0	26	96	0	97	26	24	20	28	1.99
12776332--12776362	15	2.1	15	93	0	53	25	19	19	35	1.95
12774732--12779198	885	5.1	881	84	4	5487	26	24	24	25	2.00
12778085--12778135	26	2.0	26	92	0	84	29	19	17	33	1.95
12779202--12779251	26	1.9	26	91	0	82	26	24	22	28	1.99
12780092--12780170	26	3.0	26	100	0	158	26	26	20	26	1.99
12780592--12781049	242	1.9	243	88	1	704	35	22	17	24	1.95
12781256--12781306	26	2.0	26	96	0	93	25	27	17	29	1.98
12782374--12782426	26	2.0	26	85	7	72	32	22	16	28	1.96
12782507--12782539	11	3.0	11	95	0	57	21	36	33	9	1.85
12782614--12782647	12	2.8	12	95	0	59	14	32	17	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12783292--12783344	26	2.0	26	88	0	79	28	22	18	30	1.98
12784188--12784240	26	2.0	26	96	0	97	26	26	18	28	1.98
12782183--12784954	896	3.1	897	83	6	3476	25	25	23	25	2.00
12784181--12785700	742	2.0	744	89	2	2358	25	24	23	26	2.00
12785834--12785883	26	1.9	26	95	0	91	26	26	18	30	1.98
12787619--12787697	26	3.0	26	92	0	131	27	26	17	27	1.98
12786733--12790341	904	4.0	918	82	8	4351	26	24	23	25	2.00
12788550--12788602	26	2.0	26	92	0	88	26	22	20	30	1.98
12784909--12791983	901	7.9	900	84	5	8608	26	24	23	25	2.00
12789432--12789484	26	2.0	26	92	0	88	26	26	18	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131