genome.fa.s2.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  96  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17252981--17253218	37	6.5	37	77	4	185	34	18	10	36	1.85
17255834--17255867	16	2.1	16	88	0	50	85	0	2	11	0.71
17255831--17255877	19	2.5	19	86	6	60	82	2	4	10	0.88
17256387--17256423	18	2.0	19	89	5	58	81	2	8	8	0.97
17258900--17258977	40	1.9	42	86	5	115	38	8	12	39	1.75
17259106--17259168	20	3.2	19	70	17	56	39	6	14	39	1.71
17259097--17259204	40	2.7	40	81	8	121	40	10	11	37	1.75
17259499--17259598	47	2.1	47	81	7	114	28	15	19	38	1.91
17259719--17259777	9	6.7	9	77	9	50	84	8	5	1	0.82
17260017--17260071	20	2.8	20	78	13	60	41	16	10	30	1.83
17260254--17260547	145	2.0	145	81	5	335	29	12	14	43	1.82
17260874--17260924	26	2.1	24	85	10	68	23	11	3	60	1.47
17264700--17264742	21	2.0	22	90	4	70	32	11	13	41	1.81
17264736--17264765	13	2.2	14	94	5	53	56	6	13	23	1.60
17266390--17266502	59	1.9	59	83	3	147	27	14	12	46	1.80
17266518--17266576	19	3.1	19	82	0	64	38	45	1	13	1.54
17266529--17266706	38	4.7	38	72	5	153	42	36	3	16	1.67
17266529--17266702	19	9.2	19	73	7	84	41	37	4	16	1.67
17266730--17266779	26	2.0	25	84	11	66	46	34	0	20	1.51
17269279--17269310	15	2.0	17	88	11	50	56	6	0	37	1.25
17270128--17270166	14	2.8	14	92	0	60	33	0	12	53	1.39
17271425--17271468	19	2.3	18	84	11	52	75	4	0	20	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17277165--17277240	35	2.2	34	81	9	82	23	1	7	67	1.25
17277452--17277498	16	2.8	17	87	9	62	25	2	10	61	1.39
17284824--17285213	142	2.7	141	81	7	412	31	12	14	41	1.83
17284959--17285281	144	2.3	140	79	4	333	30	12	15	42	1.83
17286604--17286776	19	9.2	18	78	9	159	42	37	5	15	1.69
17286778--17286874	27	3.6	27	73	13	76	50	34	1	14	1.50
17286829--17286887	13	4.5	13	79	12	75	47	33	0	18	1.49
17286797--17286892	7	14.3	7	77	8	76	50	33	1	15	1.52
17286797--17286920	40	3.1	40	87	5	155	48	31	1	18	1.58
17286797--17286892	33	2.9	34	82	4	106	50	33	1	15	1.52
17286851--17286906	26	2.1	27	87	9	80	46	30	1	21	1.62
17286837--17286920	39	2.1	40	84	6	109	46	32	1	20	1.58
17286829--17286964	32	4.2	31	74	15	98	45	33	0	20	1.57
17286797--17286951	40	4.0	40	80	11	144	47	32	1	18	1.57
17286830--17286952	13	9.5	13	73	15	67	45	32	0	21	1.57
17288648--17288736	25	3.7	22	75	19	70	75	2	16	5	1.10
17288682--17288716	16	2.1	16	89	5	52	74	0	14	11	1.08
17288706--17288753	26	1.9	25	87	8	71	72	0	18	8	1.08
17305821--17305857	11	3.4	11	84	0	56	83	0	13	2	0.74
17307178--17307501	47	6.9	48	72	14	194	30	10	13	45	1.77
17307224--17307501	47	5.9	47	74	12	207	32	10	13	44	1.77
17307178--17307475	139	2.1	144	83	7	380	29	10	14	45	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17307501--17307534	5	6.6	5	86	6	50	79	20	0	0	0.73
17307500--17307534	11	3.3	11	88	8	54	80	20	0	0	0.72
17307932--17308207	144	1.9	144	85	2	376	35	8	12	43	1.73
17307933--17308352	144	2.9	141	79	7	373	34	10	12	43	1.77
17309391--17309431	21	2.1	19	86	9	55	19	29	17	34	1.94
17309804--17309934	57	2.3	56	85	2	163	43	38	3	14	1.61
17309923--17310029	7	15.9	7	65	18	57	42	40	0	15	1.54
17309803--17309934	19	6.9	19	79	3	122	43	39	3	14	1.61
17309953--17310028	13	5.9	13	75	7	57	43	39	1	15	1.55
17309904--17309965	23	2.5	25	82	7	74	45	40	0	14	1.45
17309954--17310029	26	3.0	26	80	1	91	42	40	1	15	1.56
17310094--17310158	18	3.5	19	73	8	53	43	43	1	12	1.51
17312689--17313588	322	2.8	320	84	3	1123	33	10	15	40	1.80
17312637--17313588	160	5.9	161	73	5	681	33	10	15	40	1.81
17313598--17314845	161	7.8	160	72	10	703	34	9	13	41	1.78
17313705--17314794	332	3.4	319	79	5	946	34	9	13	42	1.77
17315347--17315400	21	2.6	21	81	0	63	44	11	25	18	1.83
17320838--17321542	134	5.2	134	76	8	552	26	15	20	37	1.92
17321065--17321614	269	2.0	269	99	0	1091	25	15	21	38	1.92
17331320--17331563	80	3.1	80	82	5	298	23	8	25	43	1.81
17339625--17339661	18	2.1	18	89	0	56	54	2	2	40	1.29
17339698--17339742	10	4.6	10	83	5	56	80	8	0	11	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17339706--17339742	19	1.9	20	88	5	58	83	5	0	10	0.79
17339800--17339847	18	2.6	18	80	3	51	64	4	2	29	1.23
17339854--17339929	28	2.7	27	82	10	80	69	6	1	22	1.19
17339950--17339992	22	2.0	22	86	8	63	51	6	0	41	1.29
17339985--17340030	20	2.3	20	84	0	65	28	2	0	69	1.00
17340371--17340425	24	2.3	23	79	14	58	14	10	3	70	1.28
17343557--17343619	21	3.2	20	75	20	69	31	1	4	61	1.26
17343676--17343716	9	4.4	9	87	6	55	41	0	0	58	0.98
17343686--17343723	17	2.2	18	90	4	60	44	0	2	52	1.14
17345417--17345448	6	5.7	6	85	14	50	0	31	0	68	0.90
17345417--17345449	11	3.0	11	90	0	57	0	33	0	66	0.92
17346312--17346359	20	2.4	20	82	0	69	39	10	12	37	1.77
17346390--17346425	16	2.3	16	90	4	56	30	16	19	33	1.94
17346406--17346640	118	2.0	118	86	2	328	31	14	9	45	1.76
17350741--17350792	26	2.0	26	85	7	70	65	7	7	19	1.43
17352148--17352178	2	15.5	2	93	0	53	48	0	3	48	1.17
17352586--17352653	32	2.1	32	86	10	95	42	16	19	22	1.89
17354694--17354721	14	2.0	14	100	0	56	21	21	0	57	1.41
17354969--17354999	3	10.3	3	100	0	62	67	0	0	32	0.91
17359582--17359627	20	2.3	19	82	10	56	34	10	15	39	1.82
17361771--17361814	22	2.0	23	90	4	72	2	18	0	79	0.83
17362740--17362792	16	3.3	16	76	10	63	58	15	0	26	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17364530--17364579	17	2.9	17	81	0	64	42	8	16	34	1.77
17364637--17364676	20	2.0	21	85	5	55	35	22	7	35	1.82
17366995--17367089	5	17.2	6	81	14	91	34	3	1	61	1.19
17366995--17367089	3	34.3	3	75	19	91	34	3	1	61	1.19
17366995--17367089	11	8.6	12	78	16	91	34	3	1	61	1.19
17366995--17367096	8	12.4	8	78	13	100	34	2	1	60	1.23
17367008--17367099	5	17.8	5	77	15	82	34	2	1	61	1.15
17367011--17367096	13	6.4	14	79	16	67	34	2	1	61	1.16
17367008--17367099	21	4.2	22	78	14	100	34	2	1	61	1.15
17367197--17367322	62	2.0	62	95	0	225	42	16	15	25	1.88
17374695--17374723	3	9.7	3	100	0	58	68	0	0	31	0.89
17376857--17377068	57	3.7	56	74	8	176	44	19	15	20	1.86
17376752--17377059	114	2.7	111	81	7	334	43	20	14	21	1.87
17377088--17377187	47	2.1	47	96	0	182	38	15	11	36	1.82
17377223--17377363	75	1.9	75	80	5	169	41	15	9	32	1.80
17377322--17377396	34	2.2	34	92	0	123	37	12	13	37	1.82
17377248--17377591	110	3.1	108	81	5	354	39	15	12	31	1.85
17377427--17377510	34	2.5	34	82	3	98	36	16	15	30	1.90
17377355--17377743	186	2.1	186	82	5	475	39	14	14	31	1.87
17377467--17377611	76	1.9	76	87	2	211	40	15	14	29	1.86
17385226--17385344	9	12.6	9	82	13	105	79	0	15	5	0.89
17385225--17385280	19	2.9	18	91	5	67	83	0	16	0	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17385225--17385289	21	3.2	20	89	8	96	83	0	16	0	0.66
17385228--17385351	28	4.4	27	75	12	99	79	0	15	5	0.92
17385235--17385308	31	2.4	30	82	10	80	79	0	17	2	0.84
17385273--17385345	9	7.9	9	92	3	110	76	0	13	9	1.01
17385570--17385603	15	2.2	16	89	5	52	26	5	14	52	1.64
17386541--17386581	21	2.0	21	85	9	57	36	12	12	39	1.80
17386542--17386789	78	3.1	77	83	7	268	37	13	16	32	1.88
17386700--17386739	21	1.9	21	85	10	55	37	10	17	35	1.83
17387147--17387484	41	8.1	41	77	5	261	24	12	19	42	1.86
17387152--17387484	126	2.6	125	82	4	348	24	12	19	43	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131