genome.fa.s2.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  113  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20202822--20203541	219	3.3	219	76	10	668	38	15	28	18	1.90
20202782--20203541	45	17.3	45	74	10	574	38	15	28	17	1.90
20202782--20203559	132	5.9	131	79	8	760	39	15	27	17	1.90
20204918--20204942	3	8.3	3	100	0	50	68	0	0	32	0.90
20205216--20205240	12	2.1	12	100	0	50	44	0	16	40	1.47
20210380--20210418	20	2.0	20	89	0	60	35	5	7	51	1.53
20210464--20210493	9	3.2	9	95	4	51	63	0	0	36	0.95
20210466--20210495	10	3.1	10	95	4	53	63	0	0	36	0.95
20223414--20223569	85	1.8	85	84	2	215	36	19	12	31	1.89
20224090--20224119	5	5.8	5	96	4	51	83	0	16	0	0.65
20225322--20225356	18	2.0	18	88	5	54	42	8	0	48	1.33
20227689--20227734	21	2.1	21	88	4	65	71	2	0	26	0.97
20230412--20230447	16	2.2	17	90	5	56	2	27	0	69	1.02
20237395--20237438	15	2.7	17	79	13	56	50	2	2	45	1.27
20238687--20238728	17	2.5	17	96	3	77	40	7	0	52	1.29
20239767--20239798	16	2.0	16	93	0	55	34	0	3	62	1.11
20239795--20239837	20	2.3	19	84	8	52	48	0	0	51	1.00
20242014--20242053	16	2.7	14	88	7	53	55	0	0	45	0.99
20242019--20242055	8	4.6	8	86	0	56	56	0	0	43	0.99
20242019--20242060	16	2.4	18	80	7	52	57	0	0	42	0.99
20242594--20242662	28	2.5	27	79	9	77	53	1	1	43	1.18
20242651--20242707	19	3.2	17	73	20	53	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20243539--20243571	17	2.0	17	88	5	50	72	0	0	27	0.85
20244492--20244524	17	1.9	17	100	0	66	78	0	15	6	0.93
20247013--20247053	21	2.0	21	95	4	75	43	0	9	46	1.36
20250698--20250762	33	2.0	33	96	0	121	12	16	12	58	1.63
20253359--20253384	12	2.2	12	100	0	52	38	7	7	46	1.61
20258985--20259027	22	2.0	22	86	9	61	34	2	4	58	1.32
20265489--20265602	60	1.9	60	81	0	138	39	7	7	46	1.58
20265521--20265693	94	1.8	94	90	4	278	34	11	6	47	1.65
20265611--20265785	59	3.0	58	81	6	208	34	9	5	49	1.59
20266860--20266998	73	1.9	73	80	2	163	43	15	18	23	1.88
20266933--20267576	255	2.5	252	80	6	663	46	15	17	20	1.84
20266933--20267750	86	9.6	85	76	6	571	46	15	17	20	1.84
20268610--20268765	47	3.2	46	76	14	129	22	12	10	54	1.68
20268602--20268765	52	3.2	50	76	12	158	21	11	10	56	1.65
20268602--20268783	99	1.8	101	80	13	225	24	10	9	54	1.66
20282423--20282487	25	2.6	26	78	9	73	55	3	0	41	1.15
20288013--20288057	23	2.0	23	100	0	90	28	13	22	35	1.92
20294650--20294678	14	2.0	15	93	6	51	51	0	0	48	1.00
20294735--20294779	20	2.2	20	84	0	54	68	2	4	24	1.19
20295117--20295266	14	11.5	13	66	20	55	53	2	0	44	1.17
20295126--20295206	37	2.2	36	82	6	99	53	1	1	44	1.16
20295128--20295268	9	15.4	9	66	17	60	53	1	0	44	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20296974--20297015	20	2.1	20	95	0	75	59	4	19	16	1.54
20297326--20297419	48	1.9	49	84	2	127	40	20	11	27	1.87
20297440--20297486	24	2.0	24	91	0	76	36	34	10	19	1.86
20297463--20297684	50	4.6	48	76	12	147	40	21	10	27	1.87
20297618--20297770	80	1.9	78	82	5	191	38	19	9	32	1.85
20297721--20297965	48	5.1	47	81	3	258	35	18	13	31	1.90
20311393--20311444	8	6.1	8	78	12	50	76	1	0	21	0.87
20311393--20311433	18	2.3	19	83	12	59	78	0	0	21	0.76
20315762--20315794	10	3.4	10	87	8	50	33	0	0	66	0.92
20318038--20318104	21	2.9	23	68	20	59	65	4	2	26	1.26
20320482--20320793	145	2.1	147	95	2	565	52	3	4	40	1.37
20321282--20321311	16	1.9	16	93	6	53	36	6	6	50	1.55
20323351--20323402	19	2.8	17	78	18	59	73	5	1	19	1.14
20324397--20324438	10	3.9	11	84	12	52	28	0	2	69	1.01
20324396--20324442	11	4.4	11	79	12	53	29	0	2	68	1.02
20329772--20329817	17	2.6	18	76	13	51	39	10	13	36	1.79
20330545--20330580	3	12.0	3	100	0	72	66	0	0	33	0.92
20332168--20332227	21	2.7	23	75	17	63	63	5	3	28	1.31
20335438--20335485	20	2.3	20	75	3	51	72	6	2	18	1.15
20335829--20335898	14	5.2	14	74	20	51	48	1	2	47	1.25
20335828--20335962	9	14.4	9	67	13	67	53	2	2	41	1.28
20339938--20339982	23	2.0	23	90	0	72	28	11	15	44	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20340116--20340171	10	5.4	10	79	12	51	75	0	21	3	0.96
20340116--20340174	21	2.8	22	82	12	63	76	0	20	3	0.93
20340131--20340174	11	4.2	10	80	8	52	81	0	13	4	0.83
20340124--20340161	18	2.1	18	85	9	51	76	0	21	2	0.91
20340367--20340750	50	7.8	49	76	9	264	44	19	9	26	1.80
20340367--20340830	148	3.1	143	77	6	430	43	20	9	26	1.82
20340377--20340807	100	4.4	100	82	6	420	43	19	8	27	1.81
20340367--20340805	49	8.9	49	75	11	244	44	19	8	27	1.80
20340814--20340865	24	2.2	24	86	6	70	34	32	13	19	1.90
20340772--20340913	72	2.0	72	84	2	187	39	25	9	25	1.86
20340976--20341563	48	12.2	49	78	8	494	39	18	12	29	1.87
20353631--20353680	22	2.4	21	83	12	59	24	6	2	68	1.23
20362555--20362584	16	1.9	16	93	6	53	36	6	6	50	1.55
20363949--20364014	9	6.6	10	75	25	52	10	12	0	77	1.00
20363957--20364001	8	5.8	8	78	5	56	11	11	0	77	0.99
20363955--20364008	15	3.6	14	79	16	63	9	11	0	79	0.93
20363949--20364014	26	2.6	25	78	19	75	10	12	0	77	1.00
20367840--20367917	31	2.5	31	93	0	138	28	35	16	19	1.93
20367923--20367974	21	2.5	21	90	6	79	50	0	0	50	1.00
20367923--20367974	22	2.5	22	93	6	90	50	0	0	50	1.00
20367947--20368009	30	2.0	32	84	6	85	52	1	0	46	1.10
20367962--20368009	16	3.0	16	75	0	51	56	2	0	41	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20375891--20376009	22	5.4	22	78	10	102	60	0	6	31	1.28
20375889--20375974	24	3.7	24	81	12	115	59	0	8	32	1.27
20375889--20376018	46	2.8	47	79	10	133	62	0	6	30	1.25
20375960--20376002	19	2.3	18	84	11	52	62	2	4	30	1.28
20376516--20376575	21	2.7	23	75	17	63	63	5	3	28	1.31
20378463--20378763	149	2.0	146	91	4	489	54	4	3	37	1.40
20378802--20379046	122	2.0	119	95	3	438	43	5	9	40	1.61
20379378--20379407	16	1.9	16	93	6	53	36	6	6	50	1.55
20380736--20380775	17	2.4	16	84	8	53	22	2	10	65	1.35
20381213--20381242	16	1.9	16	93	6	53	36	6	6	50	1.55
20381466--20381516	19	2.8	17	80	16	57	74	5	1	17	1.11
20381471--20381518	20	2.5	18	75	15	51	72	6	2	18	1.15
20381866--20382014	9	15.4	9	68	13	73	52	2	2	43	1.24
20381869--20381993	15	8.6	14	70	14	58	50	1	1	46	1.20
20381866--20382010	59	2.5	60	79	6	163	51	2	2	44	1.24
20382541--20382587	23	2.1	22	84	11	60	29	4	4	61	1.34
20385942--20385986	23	2.0	23	90	0	72	28	11	15	44	1.81
20386119--20386170	24	2.2	24	86	6	70	75	0	21	3	0.97
20386130--20386177	11	4.3	11	80	12	53	79	0	14	6	0.92
20386120--20386172	17	3.2	17	78	7	56	77	0	18	3	0.92
20386387--20386748	99	3.7	99	83	5	310	43	17	8	29	1.78
20386438--20386899	48	9.5	48	79	9	323	42	19	8	29	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20386486--20386900	99	4.3	98	81	5	398	41	20	8	29	1.81
20386942--20387595	48	13.5	50	80	8	567	38	19	12	30	1.88
20386982--20387595	97	6.4	95	77	9	486	38	19	12	30	1.88
20399999--20400052	21	2.6	21	77	11	58	70	3	0	25	1.04
20404183--20404236	15	3.7	15	85	11	60	77	0	20	1	0.86
20413459--20413500	21	2.1	19	86	8	57	52	0	0	47	1.00
20413354--20413624	148	1.9	144	93	3	470	52	3	4	39	1.39
20413688--20413729	21	1.9	22	85	9	59	26	0	4	69	1.08
20414139--20414168	16	1.9	16	93	6	53	36	6	6	50	1.55
20418088--20418147	14	4.2	14	73	12	50	20	1	28	50	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131