genome.fa.s2.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  105  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18797487--18797938	117	3.9	115	86	6	642	43	7	13	35	1.72
18797487--18797939	59	7.7	57	84	8	574	43	7	13	35	1.72
18797485--18797939	177	2.6	176	93	3	745	43	7	13	35	1.72
18799086--18799120	16	2.4	14	86	13	52	80	0	14	5	0.89
18799087--18799120	15	2.2	15	94	5	59	82	0	11	5	0.83
18800736--18800784	24	2.0	24	96	0	89	34	16	10	38	1.82
18801185--18801372	22	8.5	22	77	4	155	31	21	21	25	1.98
18801185--18801372	44	4.3	44	79	2	207	31	21	21	25	1.98
18801190--18801372	66	2.8	66	78	3	215	31	21	21	25	1.98
18801536--18801688	33	4.5	33	71	14	116	37	18	15	28	1.91
18801532--18801718	67	2.8	66	84	6	225	38	19	14	27	1.90
18802385--18802499	34	3.4	33	79	4	122	16	23	13	46	1.83
18802497--18802640	34	4.3	34	74	0	110	19	21	11	47	1.80
18802383--18802609	112	2.0	114	85	1	305	17	22	12	47	1.81
18802497--18803354	67	13.0	68	75	10	517	18	22	12	46	1.83
18802724--18803066	34	10.3	34	68	18	102	18	23	13	44	1.85
18802751--18803354	135	4.5	134	77	3	488	18	23	13	45	1.84
18802858--18803312	34	13.5	35	70	9	236	17	23	13	45	1.84
18802871--18803313	101	4.4	102	72	10	358	17	23	13	46	1.83
18803448--18803522	6	13.3	6	71	13	52	78	14	6	0	0.94
18803448--18803524	11	7.0	10	72	17	55	79	14	6	0	0.92
18803448--18803524	33	2.4	33	82	2	93	79	14	6	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18803912--18803945	17	1.9	17	88	5	50	67	2	2	26	1.19
18803930--18803970	16	2.5	17	80	11	50	68	2	4	24	1.22
18805680--18805706	3	9.0	3	100	0	54	66	0	0	33	0.92
18805827--18805954	30	4.4	29	80	11	129	49	31	0	18	1.54
18805827--18805954	58	2.2	58	87	2	177	49	31	0	18	1.54
18805916--18805960	14	3.2	14	77	0	54	51	28	4	15	1.63
18805856--18805953	7	13.7	7	69	8	54	47	32	1	18	1.55
18805999--18806066	8	9.0	8	69	18	56	48	25	0	26	1.51
18805974--18806081	30	3.7	29	84	8	121	48	25	0	25	1.52
18805974--18806066	14	6.4	14	73	16	64	49	23	0	26	1.50
18806153--18806193	21	2.0	21	85	9	57	56	29	0	14	1.39
18806199--18806228	14	2.1	14	93	0	51	43	30	0	26	1.55
18811942--18811998	21	2.6	22	81	10	64	40	1	1	56	1.20
18813251--18813296	20	2.4	19	82	7	56	52	4	2	41	1.33
18813668--18813729	30	2.1	30	90	0	97	40	4	4	50	1.45
18815000--18815143	66	2.3	62	76	4	144	47	14	9	27	1.75
18818729--18818784	25	2.3	25	84	3	78	23	0	28	48	1.51
18818767--18818804	20	1.9	19	89	5	58	26	2	26	44	1.67
18818757--18818839	11	7.9	11	69	14	59	24	2	20	53	1.58
18818908--18818951	19	2.3	19	84	0	52	38	4	9	47	1.56
18819216--18819253	20	1.9	20	88	0	58	50	15	0	34	1.45
18827122--18827148	4	6.8	4	100	0	54	77	0	0	22	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18832217--18832302	42	2.2	38	83	8	100	47	20	3	27	1.66
18835950--18836342	197	2.0	197	93	0	678	34	20	11	34	1.88
18840512--18841333	330	2.5	332	82	4	919	31	22	16	29	1.96
18840512--18841442	330	2.8	329	79	4	779	31	22	16	29	1.96
18843953--18844024	17	4.2	17	77	13	76	29	2	5	62	1.32
18843956--18844012	6	9.7	6	80	3	62	31	1	3	63	1.22
18845083--18845122	14	2.8	15	79	20	50	25	2	0	72	0.97
18845259--18845315	19	2.9	19	84	5	69	29	5	7	57	1.47
18845265--18845330	21	3.3	19	80	8	60	33	6	6	54	1.50
18845291--18845330	21	2.0	21	90	5	64	30	5	5	60	1.40
18845485--18845572	27	3.0	29	80	9	81	28	6	12	52	1.64
18845485--18845559	13	5.3	13	75	13	60	28	6	12	53	1.63
18845472--18845559	44	2.0	43	89	4	133	28	6	12	52	1.64
18845480--18845572	16	6.0	16	70	20	65	27	6	12	52	1.64
18845519--18845582	18	3.7	18	75	14	71	28	4	12	54	1.57
18846235--18846263	3	9.7	3	100	0	58	34	0	0	65	0.93
18850072--18850263	66	2.9	65	76	6	181	47	4	5	42	1.46
18850211--18850338	48	2.8	45	79	11	134	47	3	5	43	1.42
18854342--18854403	25	2.6	25	87	5	83	24	22	12	40	1.89
18862336--18862368	16	2.1	16	88	11	50	63	3	30	3	1.24
18862578--18862619	21	2.0	22	85	4	59	42	0	2	54	1.13
18866119--18866153	2	18.0	2	94	5	63	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18866307--18866355	2	24.5	2	93	0	80	44	2	2	51	1.24
18870771--18870797	2	13.5	2	100	0	54	48	0	0	51	1.00
18871481--18871522	19	2.1	21	86	8	61	16	11	11	59	1.61
18876494--18876519	2	13.0	2	100	0	52	50	0	0	50	1.00
18876979--18877010	2	16.5	2	93	6	57	50	0	0	50	1.00
18876491--18877492	493	2.1	483	89	4	1503	42	5	7	44	1.57
18877315--18877352	17	2.2	17	95	0	67	50	0	5	44	1.24
18879718--18879758	20	2.0	20	85	0	55	53	12	4	29	1.58
18880005--18880055	19	2.8	18	76	5	50	19	9	7	62	1.50
18883249--18883308	31	1.9	30	83	6	75	8	5	6	80	1.03
18883317--18883359	6	7.7	6	87	12	65	11	0	16	72	1.13
18883291--18883382	18	5.5	17	74	19	61	10	2	9	77	1.08
18883324--18883358	10	3.3	10	92	8	52	11	0	17	71	1.14
18883351--18883382	8	4.0	8	95	0	55	9	0	3	87	0.64
18883341--18883393	16	3.1	17	81	8	63	9	0	9	81	0.89
18883586--18883778	51	3.8	50	82	7	230	36	17	13	31	1.89
18883589--18883778	100	1.9	102	85	6	271	36	17	13	32	1.89
18883575--18883778	50	4.1	49	81	8	232	35	18	13	31	1.90
18887358--18887402	18	2.4	19	82	10	58	44	40	2	13	1.56
18887824--18887866	21	2.1	21	82	4	52	51	2	6	39	1.42
18889249--18889307	16	3.4	16	82	13	64	42	0	0	57	0.98
18889412--18889442	13	2.3	14	94	5	55	38	9	0	51	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18892661--18892719	29	2.0	29	96	0	109	45	13	13	27	1.81
18900992--18901021	3	10.3	3	92	7	53	0	70	0	30	0.88
18906545--18906569	2	12.5	2	100	0	50	52	0	0	48	1.00
18907539--18907572	16	2.1	17	88	5	52	14	11	8	64	1.49
18910513--18910565	18	2.8	18	83	11	54	41	0	3	54	1.18
18924692--18924734	21	2.1	20	82	4	50	41	6	2	48	1.43
18933673--18933795	63	2.0	61	82	9	151	41	6	12	39	1.68
18935632--18935676	21	2.1	21	83	0	54	48	8	4	37	1.55
18935715--18935748	15	2.3	15	90	10	52	52	0	0	47	1.00
18940923--18940971	2	24.5	2	87	0	62	42	2	4	51	1.32
18941693--18942025	58	5.7	58	77	8	200	32	10	5	50	1.61
18941694--18942025	59	5.7	58	80	7	334	32	10	5	50	1.61
18941693--18942025	57	5.7	58	79	7	318	32	10	5	50	1.61
18941693--18942029	115	2.9	117	82	6	364	33	10	5	50	1.61
18941698--18942015	175	1.8	173	82	4	415	32	11	5	50	1.62
18941695--18942027	60	5.7	57	80	8	332	32	10	6	50	1.61
18942012--18942051	18	2.1	20	86	9	57	57	0	5	37	1.21
18942397--18942430	17	1.9	18	88	5	52	2	41	0	55	1.15
18942864--18942907	6	7.3	6	80	10	54	79	0	2	18	0.83
18942864--18942909	24	2.0	23	87	12	67	76	0	4	19	0.96
18943092--18943271	86	2.1	87	83	8	233	46	16	15	22	1.84
18943095--18943287	42	4.6	42	77	10	171	45	17	15	22	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18943125--18943317	44	4.5	43	73	11	130	45	14	13	26	1.83
18943094--18943317	86	2.6	84	81	6	220	45	15	14	24	1.84
18943487--18943536	23	2.2	22	82	10	57	34	18	16	32	1.92
18943494--18943540	22	2.1	23	88	11	71	31	19	17	31	1.94
18943607--18943738	21	6.5	21	71	14	89	36	15	9	38	1.80
18943575--18943725	79	1.9	79	93	0	257	33	16	11	39	1.84
18944849--18944914	9	7.5	8	80	14	69	6	13	0	80	0.89
18944849--18944914	18	3.7	18	86	11	91	6	13	0	80	0.89
18950922--18950947	5	5.2	5	100	0	52	80	0	0	19	0.71
18951021--18951241	60	3.7	59	80	7	250	33	11	6	48	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131