genome.fa.s2.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  74  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13866161--13868241	718	2.9	715	87	3	3031	26	22	23	27	2.00
13871700--13871752	26	2.0	26	89	7	81	28	16	24	30	1.97
13873468--13873520	26	2.0	26	96	0	97	28	20	24	26	1.99
13872595--13875101	901	2.8	899	86	1	3337	25	23	24	26	2.00
13876776--13876828	26	2.0	26	88	0	79	28	20	24	26	1.99
13877677--13877729	26	2.0	26	96	0	97	24	22	26	26	2.00
13876170--13884378	901	9.2	893	85	4	10022	25	23	24	26	2.00
13881211--13881261	26	2.0	26	96	0	93	27	17	25	29	1.98
13882109--13882159	26	2.0	26	92	0	84	33	15	23	27	1.95
13885383--13885435	26	2.0	26	96	0	97	28	20	24	26	1.99
13886263--13886313	26	2.0	26	88	0	75	31	11	25	31	1.92
13884721--13887297	891	2.9	877	85	4	3244	25	23	24	25	2.00
13887141--13887193	26	2.0	26	88	0	79	30	18	22	28	1.98
13886588--13887997	752	1.9	741	86	3	2008	26	23	22	27	2.00
13887882--13887934	26	2.0	26	92	0	88	26	15	24	33	1.95
13888784--13888836	26	2.0	26	96	0	97	28	20	24	26	1.99
13887338--13891508	902	4.6	896	86	2	5568	25	24	23	25	2.00
13892189--13892241	26	2.0	26	92	0	88	28	22	24	24	2.00
13893099--13893149	26	2.0	26	100	0	102	27	19	29	23	1.98
13893993--13894045	26	2.0	26	92	7	90	26	16	26	30	1.97
13891453--13899462	897	9.0	899	84	4	9803	25	23	24	26	2.00
13895743--13895793	26	2.0	26	100	0	102	29	19	23	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13897545--13897597	26	2.0	26	96	0	97	26	18	26	28	1.98
13899330--13899382	26	2.0	26	96	0	97	26	18	26	28	1.98
13900052--13900104	26	2.0	26	88	0	79	28	16	26	28	1.97
13900943--13900995	26	2.0	26	100	0	106	26	20	26	26	1.99
13899356--13903633	890	4.8	890	86	4	5622	26	24	24	25	2.00
13901830--13901882	26	2.0	26	96	0	97	26	18	28	26	1.98
13902739--13902791	26	2.0	26	88	0	79	30	18	20	30	1.97
13903142--13904151	503	2.0	503	87	3	1451	27	23	21	28	1.99
13904132--13904184	26	2.0	26	96	0	97	26	18	26	28	1.98
13905033--13905085	26	2.0	26	85	0	70	26	24	24	24	2.00
13903645--13905960	903	2.6	898	88	2	3358	25	24	24	25	2.00
13905216--13907383	714	3.0	712	87	3	3148	26	23	23	26	2.00
13907358--13907409	26	2.0	26	96	0	95	28	19	25	26	1.98
13906619--13909674	873	3.5	873	85	4	3857	25	24	24	26	2.00
13909435--13909915	239	2.0	239	96	0	881	27	18	15	38	1.91
13911121--13911170	26	1.9	26	95	0	91	30	20	24	26	1.98
13911309--13911384	26	2.9	25	84	7	91	32	19	22	25	1.97
13911124--13911548	211	2.0	212	83	4	527	24	26	27	21	1.99
13913952--13914003	26	2.0	26	88	0	77	28	21	25	25	1.99
13912198--13915134	896	3.3	889	80	9	3045	25	24	25	25	2.00
13914910--13915370	228	2.0	230	92	3	764	20	27	33	18	1.96
13915137--13924807	897	10.8	877	83	5	10836	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13922214--13922266	26	2.0	26	96	0	97	26	18	26	28	1.98
13923111--13923163	26	2.0	26	100	0	106	26	20	26	26	1.99
13924020--13924072	26	2.0	26	92	0	88	24	18	28	28	1.98
13925621--13925653	11	3.0	11	100	0	66	9	36	36	18	1.82
13924803--13930095	914	5.9	875	81	7	5482	25	23	24	26	2.00
13928415--13928467	26	2.0	26	96	0	97	28	20	24	26	1.99
13929322--13929372	26	2.0	26	100	0	102	27	15	27	29	1.96
13929555--13929587	8	4.1	8	100	0	66	12	27	60	0	1.32
13930166--13930218	26	2.0	26	96	0	97	28	20	24	26	1.99
13931063--13931115	26	2.0	26	92	0	88	28	18	24	28	1.98
13931611--13931663	26	2.0	26	88	0	79	28	18	24	28	1.98
13931235--13934293	905	3.4	893	84	7	3832	25	24	24	24	2.00
13934753--13934805	26	2.0	26	96	0	97	28	20	24	26	1.99
13935648--13935700	26	2.0	26	92	0	88	26	16	28	28	1.97
13936560--13936612	26	2.0	26	92	7	90	26	16	26	30	1.97
13936983--13937039	26	2.2	26	83	0	69	22	5	10	61	1.48
13937543--13944577	902	7.9	887	84	5	8318	25	23	24	26	2.00
13943657--13943709	26	2.0	26	96	0	97	28	20	24	26	1.99
13945270--13945322	26	2.0	26	100	0	106	26	20	26	26	1.99
13946858--13946910	26	2.0	26	88	0	79	26	18	26	28	1.98
13947764--13947814	26	2.0	26	88	7	77	31	17	23	27	1.97
13946557--13957689	900	12.4	898	86	3	14148	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13950457--13950507	26	2.0	26	92	7	86	31	19	23	25	1.98
13952263--13952315	26	2.0	26	96	0	97	28	18	26	26	1.98
13953163--13953215	26	2.0	26	92	0	88	26	16	26	30	1.97
13954062--13954112	26	2.0	26	92	0	84	29	21	23	25	1.99
13955812--13955862	26	2.0	26	96	0	93	29	19	25	25	1.99
13957609--13957661	26	2.0	26	92	0	88	26	16	26	30	1.97
13958391--13958442	26	2.0	26	92	0	86	26	11	28	32	1.91
13959860--13959910	26	2.0	26	96	0	93	27	15	29	27	1.96
13961639--13961691	26	2.0	26	92	0	88	28	15	28	28	1.96
13962516--13962568	26	2.0	26	100	0	106	26	20	26	26	1.99
13958654--13964129	878	6.2	875	83	6	5784	25	23	24	25	2.00
13965050--13965102	26	2.0	26	92	0	88	28	22	24	24	2.00
13966805--13966857	26	2.0	26	96	0	97	28	20	24	26	1.99
13964406--13968127	889	4.2	888	84	5	4767	25	23	24	26	2.00
13967694--13967746	26	2.0	26	96	0	97	26	18	26	28	1.98
13967674--13968581	458	2.0	458	86	1	1282	22	25	27	24	2.00
13969038--13969090	26	2.0	26	88	0	79	26	16	24	32	1.97
13969950--13970002	26	2.0	26	96	0	97	26	22	24	26	2.00
13968128--13971833	895	4.1	896	84	5	4623	25	24	24	25	2.00
13971503--13971539	12	3.0	12	92	4	56	35	16	32	16	1.91
13971725--13971776	26	2.0	26	96	0	95	25	19	28	26	1.98
13977525--13979851	859	2.7	848	87	3	3320	26	23	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13980529--13980577	22	2.2	22	92	0	80	24	42	20	12	1.86
13980728--13980780	26	2.0	26	96	0	97	28	16	24	30	1.97
13981636--13981688	26	2.0	26	92	7	90	30	20	22	26	1.98
13979976--13985954	903	6.7	896	85	4	7563	25	23	24	25	2.00
13982534--13982586	26	2.0	26	96	0	97	28	20	24	26	1.99
13985201--13985252	26	2.0	26	88	0	77	26	19	25	28	1.98
13983437--13985954	897	2.8	898	86	2	3334	25	23	24	26	2.00
13986713--13986765	26	2.0	26	96	0	97	28	20	24	26	1.99
13987606--13987657	26	2.0	26	96	3	97	25	21	26	26	1.99
13985999--13988736	904	3.1	880	83	6	3302	25	23	24	25	2.00
13988494--13988545	26	2.0	26	88	3	79	30	17	23	28	1.97
13988519--13988884	158	2.3	158	81	6	402	24	27	27	21	1.99
13989544--13989596	26	2.0	26	96	0	97	26	18	26	28	1.98
13988837--13991096	727	3.0	742	88	4	3303	25	22	24	27	2.00
13991033--13991085	26	2.0	26	88	0	79	28	20	22	28	1.99
13991933--13991985	26	2.0	26	96	0	97	26	15	26	32	1.95
13990308--13994606	877	4.8	895	84	6	5207	25	23	24	25	2.00
13992816--13992881	26	2.5	26	97	0	123	28	18	25	27	1.98
13993877--13995360	721	2.1	714	87	3	2133	26	22	23	26	2.00
13995341--13995419	26	3.0	26	96	0	140	27	21	24	26	1.99
13994591--14003399	902	9.9	899	84	5	10557	25	23	24	26	2.00
13998049--13998101	26	2.0	26	88	0	79	30	20	20	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13998946--13998998	26	2.0	26	96	0	97	28	20	24	26	1.99
14002467--14002519	26	2.0	26	96	0	97	28	20	24	26	1.99
14003974--14004033	25	2.4	25	86	8	79	11	26	31	30	1.92
14004118--14004170	26	2.0	26	88	0	79	30	18	22	28	1.98
14006032--14006084	26	2.0	26	100	0	106	26	20	26	26	1.99
14006823--14006873	26	2.0	26	96	0	93	27	21	27	23	1.99
14007717--14007769	26	2.0	26	92	0	88	26	20	26	26	1.99
14008615--14008667	26	2.0	26	100	0	106	26	20	26	26	1.99
14009509--14009561	26	2.0	26	96	0	97	28	20	24	26	1.99
14006192--14010427	894	4.7	895	89	2	6096	26	24	23	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131