genome.fa.s2.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  3  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
225382--226037	180	3.6	178	75	9	492	42	8	9	40	1.67
226121--226250	63	2.1	64	83	11	162	43	6	12	37	1.69
226324--226989	359	1.8	361	79	7	780	40	7	9	42	1.66
226216--228070	180	10.4	179	73	9	1080	40	8	9	42	1.67
228203--228785	180	3.2	178	78	6	473	42	10	7	39	1.67
228123--233688	181	30.8	177	70	13	1049	41	9	8	40	1.67
228831--233772	181	27.6	181	75	8	3433	41	9	8	41	1.67
232269--232301	18	1.9	17	88	11	50	39	6	6	48	1.53
239904--239955	9	5.9	9	81	4	61	23	1	25	50	1.60
239906--239959	18	3.1	18	83	5	74	24	1	25	48	1.61
239906--239955	26	1.9	26	87	0	73	24	2	26	48	1.62
240016--240067	26	2.0	26	92	0	86	25	9	25	40	1.85
241498--241930	175	2.4	177	79	7	457	42	11	7	38	1.69
241872--242007	67	2.0	68	91	1	220	37	15	5	41	1.71
241963--242567	181	3.4	179	79	5	607	40	10	8	40	1.70
250671--250836	90	1.8	90	81	2	208	25	28	25	19	1.99
250866--251028	45	3.6	44	76	11	152	25	25	30	18	1.98
251086--251196	45	2.5	45	77	2	107	23	20	32	23	1.98
251113--251243	45	2.9	44	80	2	118	22	22	32	22	1.98
251702--251758	26	2.2	26	83	0	69	61	10	3	24	1.44
265528--265692	45	3.7	44	75	12	138	24	24	30	21	1.99
265615--265769	45	3.4	46	78	5	129	24	25	31	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
266431--266899	45	10.4	45	74	3	262	21	24	31	21	1.98
266475--266711	89	2.6	90	78	3	246	22	21	32	22	1.98
266794--266923	45	2.9	44	86	2	161	20	26	30	21	1.98
266745--266930	90	2.1	90	81	2	212	20	25	32	20	1.98
272488--272525	3	12.7	3	88	0	58	60	0	0	39	0.97
273441--273469	14	2.1	14	100	0	58	31	20	27	20	1.98
273982--274007	3	8.7	3	100	0	52	65	0	0	34	0.93
274153--274195	11	3.9	11	85	8	61	60	0	0	39	0.97
274374--274438	14	4.5	14	75	7	58	52	30	3	13	1.56
274344--274444	44	2.4	44	86	6	147	51	29	1	16	1.56
274344--274596	87	3.0	85	77	9	214	48	32	3	16	1.62
274344--274681	28	11.8	28	76	9	204	47	30	2	19	1.64
274535--274575	21	1.9	22	85	14	59	46	34	0	19	1.50
274428--274681	57	4.4	56	77	7	206	46	29	3	20	1.66
274701--274798	14	6.7	15	65	12	51	51	28	1	19	1.54
274732--274812	14	5.7	14	70	16	51	48	32	0	19	1.50
274774--274818	13	3.4	13	75	6	54	51	31	0	17	1.46
274728--274861	28	4.7	27	80	5	124	48	30	1	19	1.58
274781--274878	28	3.5	28	83	6	85	48	30	2	18	1.59
287265--287309	14	3.1	14	81	12	56	2	24	0	73	0.95
303150--303191	20	2.1	20	100	0	84	28	30	26	14	1.95
304874--304996	11	11.4	11	75	17	98	13	4	1	80	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
304873--304996	6	20.7	6	71	21	75	13	4	1	80	0.93
304875--304997	5	23.0	5	74	18	79	14	4	1	79	0.95
305099--305142	21	2.0	22	86	4	63	20	4	4	70	1.23
305232--305259	14	2.0	14	100	0	56	28	35	14	21	1.92
306168--306688	118	4.4	116	83	7	623	45	6	11	36	1.68
306168--306691	60	8.8	58	84	7	604	45	6	11	36	1.68
306560--306602	16	2.6	17	77	7	52	46	9	0	44	1.35
306703--306747	22	2.1	21	83	4	54	8	13	0	77	0.98
313362--313391	8	3.8	8	100	0	60	90	0	0	10	0.47
314407--314620	41	5.1	41	83	2	230	25	16	21	36	1.94
316251--316428	61	3.0	60	83	6	202	38	18	4	38	1.71
320526--320576	22	2.4	22	86	3	68	64	1	1	31	1.15
320591--320629	15	2.5	15	87	8	51	41	2	0	56	1.13
332255--332314	32	1.9	31	86	3	84	51	1	3	43	1.28
334772--334823	2	26.0	2	96	0	59	40	0	9	50	1.35
337151--337184	16	2.1	16	88	0	50	55	8	0	35	1.31
348352--348396	12	3.8	12	84	0	63	53	2	2	42	1.25
349402--349453	22	2.3	22	83	3	59	34	1	9	53	1.45
349519--349566	3	16.0	3	87	8	71	64	2	0	33	1.05
349830--349929	30	3.4	29	76	6	94	49	31	0	20	1.49
349834--349929	15	6.5	14	75	9	84	47	31	0	20	1.50
349978--350030	23	2.3	23	80	0	61	43	24	3	28	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
351761--351802	22	2.0	21	85	4	57	38	7	4	50	1.51
356040--356078	20	2.0	20	100	0	78	30	28	0	41	1.57
358753--358800	22	2.2	22	88	0	69	25	25	18	31	1.98
358767--359234	111	4.2	110	78	8	416	25	20	16	37	1.93
358767--359224	221	2.1	221	81	5	534	25	20	16	37	1.93
359492--359996	102	5.0	101	86	1	636	22	18	11	47	1.80
359560--359614	15	3.4	15	72	18	56	20	23	9	47	1.78
359665--359816	34	4.5	34	69	17	100	21	22	11	44	1.83
359865--359944	33	2.4	33	81	8	90	22	17	13	46	1.83
359486--359996	204	2.5	204	87	1	729	22	18	11	47	1.80
359940--360047	51	2.1	51	89	3	164	15	16	13	53	1.73
359831--360145	153	2.1	153	86	1	436	19	16	13	50	1.77
359991--360227	102	2.3	102	89	2	368	22	17	13	46	1.82
359736--360227	255	1.9	255	85	1	673	20	17	13	47	1.81
360382--360463	34	2.4	34	95	0	146	14	19	14	51	1.77
360731--360775	12	3.8	12	78	0	54	51	2	4	42	1.34
360821--360914	14	6.5	15	80	15	92	50	29	1	19	1.55
360823--360902	14	5.5	15	85	7	103	50	28	0	21	1.49
361397--361426	15	2.0	15	100	0	60	53	0	0	46	1.00
363766--363844	29	2.6	31	80	6	99	46	2	0	50	1.14
365731--365789	18	3.2	18	76	4	64	35	1	0	62	1.05
365749--365777	15	1.9	15	100	0	58	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365732--365812	37	2.2	38	82	6	94	37	3	1	58	1.24
366009--366053	24	1.9	24	86	4	65	44	2	2	51	1.26
366470--366494	5	5.0	5	100	0	50	20	0	0	80	0.72
367101--367141	19	2.2	19	95	0	73	31	12	26	29	1.92
371424--371507	23	3.6	23	79	3	87	38	4	3	53	1.39
371570--371615	17	2.7	17	75	18	51	60	0	2	36	1.09
371570--371619	19	2.5	20	71	12	50	62	0	2	36	1.07
372900--372953	3	17.7	3	92	3	90	31	3	0	64	1.11
376992--377058	33	2.0	34	85	8	93	49	10	0	40	1.37
377500--377539	19	2.0	21	86	13	59	45	7	0	47	1.31
378834--378868	2	18.0	2	94	5	63	51	0	0	48	1.00
387145--387214	32	2.2	32	89	0	104	27	30	7	35	1.83
388882--388948	16	4.3	16	77	3	66	40	26	11	20	1.88
390374--390685	156	2.0	157	97	0	590	24	13	21	40	1.89
390680--390706	2	13.5	2	100	0	54	0	0	48	51	1.00
407843--407869	3	9.0	3	100	0	54	66	0	0	33	0.92
407868--407915	3	16.0	3	100	0	96	33	0	0	66	0.92
423851--423879	2	14.5	2	100	0	58	51	0	0	48	1.00
428700--428725	13	2.0	13	100	0	52	7	15	0	76	0.99
432931--432977	2	23.5	2	100	0	94	0	48	0	51	1.00
449271--449296	13	2.0	13	100	0	52	76	0	7	15	0.99
453459--453547	44	2.0	44	91	0	142	29	11	25	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
456725--456751	2	13.5	2	100	0	54	51	0	0	48	1.00
474450--474483	18	1.9	17	88	5	50	41	17	17	23	1.90
475190--475219	2	15.0	2	92	0	51	53	0	46	0	1.00
477136--477177	12	3.4	12	84	12	50	35	2	2	59	1.23
488478--488591	56	2.0	56	96	0	210	34	14	9	41	1.79
494285--494347	32	1.9	34	83	6	85	76	1	14	7	1.08
495397--495434	16	2.4	17	82	13	53	34	0	10	55	1.34
497866--498030	16	10.4	16	72	14	110	47	33	1	16	1.55
497866--497968	17	6.2	17	78	9	106	49	33	1	14	1.55
497866--498048	44	3.9	49	76	16	145	48	33	1	16	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131