genome.fa.s2.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  98  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17559259--17559486	122	1.9	122	84	5	309	35	17	14	32	1.90
17560703--17560751	24	2.0	24	84	7	64	57	0	2	40	1.10
17561369--17561409	3	13.7	3	100	0	82	31	0	0	68	0.90
17563141--17563171	16	1.9	16	93	0	53	67	3	0	29	1.06
17563535--17563599	32	2.0	31	82	5	76	58	3	13	24	1.50
17563650--17563916	36	7.4	36	70	10	134	50	7	13	28	1.68
17563645--17563911	145	1.8	145	78	9	303	50	7	12	29	1.68
17563833--17563947	36	3.2	36	80	9	128	55	7	10	26	1.60
17564995--17565036	21	2.0	21	100	0	84	38	9	19	33	1.84
17568878--17568929	22	2.4	22	80	6	61	34	5	5	53	1.49
17579626--17579668	22	2.0	22	86	9	61	34	2	6	55	1.39
17581366--17581469	19	5.8	17	70	21	54	50	9	6	32	1.61
17581371--17581461	37	2.5	37	83	7	114	50	9	6	32	1.61
17581371--17581460	19	4.8	19	71	19	64	51	10	6	32	1.61
17581709--17581758	22	2.3	22	80	12	59	52	12	6	30	1.62
17581725--17581788	31	2.1	31	88	5	94	53	12	6	28	1.62
17581851--17581979	24	5.5	24	71	18	94	52	9	4	33	1.54
17581858--17581979	47	2.7	45	84	10	151	53	9	4	32	1.53
17581923--17581968	20	2.2	20	88	3	65	56	10	2	30	1.46
17581910--17581981	21	3.3	21	69	17	65	55	11	1	31	1.43
17582658--17582687	12	2.5	12	94	0	51	70	13	0	16	1.18
17582659--17582700	13	3.3	13	87	9	52	71	7	2	19	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17582987--17583351	43	8.7	42	80	7	375	38	17	13	30	1.89
17582985--17583338	126	2.8	125	81	6	385	38	17	13	30	1.89
17582987--17583351	85	4.3	83	82	6	389	38	17	13	30	1.89
17583523--17583547	13	1.9	13	100	0	50	40	12	24	24	1.88
17587841--17587868	7	4.0	7	100	0	56	28	0	0	71	0.86
17588818--17588854	20	2.0	20	89	10	60	45	21	2	29	1.65
17588864--17588965	41	2.5	41	80	4	109	44	18	13	23	1.86
17589342--17589562	21	9.8	21	70	18	140	37	15	9	38	1.79
17589344--17589848	46	10.7	46	83	8	602	37	15	9	38	1.79
17589579--17589648	21	3.1	21	79	15	86	41	15	8	34	1.78
17589681--17589848	21	7.4	21	74	15	147	37	15	9	37	1.80
17589524--17589796	148	1.8	150	88	7	419	38	15	8	38	1.77
17591262--17591287	7	3.7	7	100	0	52	11	11	0	76	1.01
17591277--17591323	17	2.7	18	78	18	55	6	17	0	76	0.98
17591253--17591322	33	2.1	33	84	7	88	7	17	0	75	1.01
17591247--17591323	24	3.2	23	71	18	59	6	19	0	74	1.04
17591655--17591692	20	2.0	20	89	5	60	2	18	2	76	1.02
17596009--17596069	13	4.8	13	76	8	54	75	4	1	18	1.06
17595988--17596056	30	2.3	30	76	18	72	72	4	7	15	1.23
17598376--17598402	8	3.4	8	100	0	54	11	0	0	88	0.50
17601495--17601572	21	3.7	21	70	23	65	62	7	7	21	1.47
17602138--17602191	28	1.9	28	96	0	99	20	31	14	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17603134--17603171	20	1.9	20	89	10	60	42	28	15	13	1.85
17610921--17610973	21	2.6	20	82	8	63	30	28	20	20	1.98
17610920--17610989	20	3.5	20	75	14	63	30	25	22	21	1.99
17612481--17612569	31	2.6	34	82	8	85	56	11	3	29	1.51
17612506--17612569	31	2.0	33	87	9	96	57	9	3	29	1.45
17612679--17612754	24	3.2	23	78	10	64	59	7	2	30	1.40
17612739--17612820	32	2.6	32	88	0	119	52	8	6	32	1.57
17612784--17612825	20	2.1	20	86	0	57	52	4	4	38	1.44
17612804--17612945	24	6.1	23	74	14	114	54	9	2	33	1.46
17612841--17612945	47	2.3	45	88	6	149	55	10	1	32	1.45
17612889--17612953	21	3.2	20	80	6	76	55	10	3	30	1.50
17612889--17612934	20	2.2	20	88	3	65	56	10	2	30	1.46
17612876--17612964	21	4.1	21	72	13	72	55	11	2	31	1.48
17616481--17616520	11	3.6	11	89	0	62	25	0	25	50	1.50
17616547--17616692	52	2.8	52	89	2	213	45	8	21	25	1.79
17627285--17627387	51	2.0	51	96	0	188	25	19	5	49	1.70
17635260--17637954	161	16.8	161	77	6	2027	32	8	14	43	1.77
17635260--17637958	643	4.2	638	81	4	2486	32	8	14	43	1.77
17635316--17637851	804	3.2	792	78	6	2460	32	8	15	43	1.77
17639039--17639113	34	2.2	34	80	0	87	33	20	10	36	1.87
17639910--17639978	32	2.2	33	84	5	88	33	1	8	56	1.39
17640425--17640525	42	2.5	40	76	18	97	50	2	1	44	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17642324--17642362	18	2.2	18	86	13	55	33	0	0	66	0.92
17642327--17642362	19	1.9	20	88	11	58	33	0	0	66	0.92
17643807--17643864	26	2.3	25	87	3	80	48	1	1	48	1.22
17643828--17643867	15	2.6	15	80	4	53	50	0	2	47	1.14
17643881--17643923	19	2.3	19	84	8	52	53	0	2	44	1.13
17644358--17644417	30	2.0	30	83	6	77	63	0	1	35	1.05
17646407--17646468	30	2.0	32	82	17	78	32	3	0	64	1.09
17648273--17648415	59	2.4	58	80	1	160	57	17	3	21	1.55
17648273--17648434	59	2.8	56	77	8	155	58	16	3	22	1.51
17649771--17649816	22	2.1	22	88	8	67	13	2	6	78	1.04
17650515--17650553	20	2.0	20	90	5	62	28	0	0	71	0.86
17650589--17650628	11	3.5	11	83	12	53	67	2	0	30	1.04
17650677--17650720	23	2.0	23	86	4	63	43	2	4	50	1.35
17659575--17659619	2	22.5	2	90	0	72	48	0	4	46	1.22
17660482--17660517	2	18.0	2	100	0	72	50	0	0	50	1.00
17665020--17665063	23	1.9	23	90	0	70	45	11	9	34	1.72
17668734--17668816	38	2.1	40	93	4	143	42	3	4	49	1.41
17668825--17668876	19	3.1	19	64	30	53	53	0	3	42	1.19
17668810--17668876	32	2.1	32	100	0	134	55	0	2	41	1.15
17669087--17669134	6	8.7	6	77	13	50	52	2	0	45	1.12
17669055--17669128	22	3.4	22	75	17	66	51	6	1	40	1.37
17669039--17669133	16	5.9	16	75	8	86	49	7	3	40	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17673614--17673692	41	1.9	42	84	7	108	53	10	7	29	1.62
17678560--17678603	3	14.7	3	85	0	61	38	2	27	31	1.69
17678695--17678753	28	2.1	28	96	0	109	42	8	3	45	1.51
17682682--17682711	2	15.0	2	92	0	51	53	0	0	46	1.00
17683075--17683153	4	19.8	4	86	0	68	49	8	2	39	1.48
17683388--17683417	2	15.0	2	92	0	51	46	0	3	50	1.18
17683935--17683970	2	18.0	2	94	0	63	50	47	0	2	1.15
17683970--17683994	2	12.5	2	100	0	50	52	0	0	48	1.00
17684500--17684577	35	2.2	35	84	8	97	33	6	5	55	1.48
17684722--17684793	22	3.3	22	73	22	62	31	0	5	62	1.18
17685612--17685639	3	9.3	3	100	0	56	64	0	35	0	0.94
17686829--17686868	18	2.2	18	86	8	55	47	5	5	42	1.47
17687812--17687932	12	10.0	12	72	17	65	23	7	0	68	1.20
17687800--17687863	33	1.9	34	87	3	94	26	3	1	68	1.13
17687802--17687848	22	2.1	22	84	11	60	27	2	0	70	0.99
17688881--17688948	26	2.7	25	86	4	100	51	1	5	41	1.35
17690401--17690835	154	2.8	157	78	10	462	43	15	7	32	1.76
17690386--17690873	154	3.1	155	76	11	442	43	16	7	32	1.76
17693081--17693384	159	1.9	158	89	0	464	39	19	6	34	1.78
17694605--17694713	38	2.8	38	79	5	94	30	10	22	37	1.87
17696878--17696933	16	3.7	15	83	9	69	0	19	1	78	0.84
17703031--17703085	16	3.3	16	82	7	56	45	1	1	50	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17703090--17703245	77	2.0	77	96	0	285	35	17	12	33	1.87
17703486--17703532	23	2.0	23	95	0	85	14	25	6	53	1.65
17705820--17705975	19	8.2	19	69	13	106	23	13	22	40	1.89
17705815--17705928	57	2.0	57	81	6	133	22	11	23	42	1.86
17706356--17706423	16	4.3	15	75	14	66	22	2	5	69	1.24
17706405--17706450	20	2.3	20	80	0	56	26	0	6	67	1.15
17707058--17707102	24	1.9	23	86	4	63	11	15	4	68	1.34
17707058--17707109	12	4.2	12	76	11	52	9	13	5	71	1.30
17710988--17711013	2	13.0	2	100	0	52	50	0	0	50	1.00
17713287--17713330	17	2.6	17	88	0	61	20	2	0	77	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131