genome.fa.s2.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  109  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19401826--19401865	10	3.9	10	83	6	53	32	2	0	65	1.06
19401869--19401920	27	2.0	26	92	3	86	51	5	0	42	1.25
19404397--19404462	26	2.6	26	88	4	91	51	1	1	45	1.19
19404555--19404715	23	6.7	23	73	19	141	42	1	1	54	1.19
19404555--19404715	13	13.2	13	69	20	107	42	1	1	54	1.19
19404554--19404664	44	2.7	40	83	10	120	41	0	2	55	1.14
19404554--19404715	18	9.0	17	69	21	91	42	1	1	54	1.19
19404625--19404705	32	2.4	34	80	15	98	44	2	1	51	1.22
19411159--19411192	12	2.8	12	86	0	50	5	73	0	20	1.04
19415607--19415905	149	2.0	149	99	0	589	42	18	16	22	1.89
19416640--19416683	20	2.2	20	83	4	52	56	27	9	6	1.55
19418992--19419110	59	2.0	59	96	0	220	41	1	11	45	1.51
19419930--19420111	87	2.1	87	88	2	267	47	8	10	33	1.67
19420851--19420895	21	2.0	21	87	8	63	40	0	0	60	0.97
19420856--19420913	18	3.0	18	80	10	53	34	0	0	65	0.93
19420880--19420913	12	2.8	12	83	16	52	26	0	0	73	0.83
19424848--19424876	12	2.4	12	100	0	58	17	0	31	51	1.45
19424843--19424891	7	7.6	7	76	17	52	20	0	32	46	1.51
19424843--19424891	19	2.5	20	84	15	68	20	0	32	46	1.51
19424915--19424954	14	2.9	14	96	0	71	20	7	32	40	1.80
19426880--19426944	24	2.7	24	92	0	94	43	12	1	43	1.51
19427303--19427354	20	2.6	20	83	16	72	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19427313--19427353	22	2.0	20	90	9	64	48	0	0	51	1.00
19427345--19427380	8	4.5	8	85	0	54	58	0	2	38	1.13
19427798--19427838	21	2.0	21	85	0	55	9	4	7	78	1.10
19427983--19428102	50	2.4	49	82	9	147	43	8	14	34	1.75
19427863--19428105	49	5.0	49	70	8	165	43	9	13	33	1.76
19428153--19428219	33	2.1	31	83	10	82	17	11	19	50	1.77
19428603--19428649	19	2.8	16	81	18	51	14	8	2	74	1.15
19428752--19428795	23	1.9	23	90	0	70	0	27	0	72	0.85
19428785--19428865	36	2.3	36	82	6	94	17	13	1	67	1.29
19429814--19429883	10	6.5	10	74	20	61	0	17	1	81	0.77
19433441--19433551	41	2.7	41	81	5	118	24	19	18	36	1.94
19441784--19441831	15	3.1	15	80	13	53	45	0	6	47	1.27
19443403--19443432	9	3.2	9	90	9	51	50	0	0	50	1.00
19443403--19443442	19	2.0	20	90	4	64	50	0	0	50	1.00
19444906--19444956	19	2.7	19	93	0	84	66	5	9	17	1.40
19445041--19445092	26	2.0	27	88	3	79	67	0	1	30	1.02
19445311--19445349	15	2.5	15	83	4	51	82	0	15	2	0.79
19452738--19452762	4	6.2	4	100	0	50	24	0	0	76	0.80
19456099--19456268	84	2.0	83	96	1	313	37	4	5	51	1.47
19456889--19456928	19	2.0	21	85	9	57	67	0	2	30	1.04
19456889--19456930	15	2.9	15	89	6	61	69	0	2	28	1.01
19461590--19461630	19	2.1	20	95	4	75	34	14	12	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19464806--19464866	18	3.4	17	77	6	50	39	0	1	59	1.08
19486077--19486136	31	1.9	31	86	0	84	33	1	11	53	1.47
19488221--19488265	3	15.0	3	90	0	72	35	2	0	62	1.08
19490201--19490229	11	2.5	12	94	5	51	31	34	6	27	1.83
19490422--19490789	160	2.3	159	79	4	400	38	16	7	37	1.76
19490699--19491175	102	4.7	102	80	2	485	43	18	7	30	1.78
19497288--19497525	117	2.0	118	91	1	390	51	10	0	37	1.40
19498247--19498318	38	1.9	37	82	2	90	43	15	12	29	1.83
19498469--19498501	13	2.5	13	95	0	57	72	9	3	15	1.21
19498665--19498700	18	2.0	18	88	0	54	13	8	0	77	0.98
19499418--19499442	3	8.3	3	100	0	50	32	0	0	68	0.90
19499407--19499488	12	6.9	11	81	12	58	21	2	2	73	1.07
19499590--19499651	22	2.8	21	76	9	61	19	4	1	74	1.09
19499967--19500010	19	2.4	19	96	3	81	20	9	25	45	1.80
19500511--19500571	11	5.6	11	77	11	63	16	4	1	77	1.03
19500500--19500608	5	21.6	5	74	14	75	18	3	1	76	1.03
19500514--19500608	6	15.5	6	71	20	72	15	4	2	77	1.01
19510952--19510994	19	2.3	19	96	4	79	86	0	0	13	0.58
19510952--19511009	9	6.8	8	81	13	53	86	0	3	10	0.69
19510952--19511002	9	5.7	9	81	6	59	86	0	1	11	0.66
19512014--19512142	41	3.1	41	84	5	152	25	16	22	35	1.94
19512150--19512204	1	55.0	1	77	0	56	89	5	0	5	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19512158--19512202	15	2.9	15	87	6	63	88	4	0	6	0.61
19512352--19512440	6	14.7	6	74	9	56	15	3	3	77	1.03
19512541--19512584	21	2.0	22	86	4	63	22	4	2	70	1.17
19512554--19512616	32	2.0	32	84	6	83	22	3	3	71	1.14
19512541--19512620	22	3.7	21	72	8	61	22	3	2	71	1.14
19513001--19513040	19	2.1	19	86	9	55	22	27	15	35	1.94
19513468--19513564	5	18.6	5	72	16	72	16	6	1	76	1.04
19513482--19513564	17	4.9	16	81	10	85	14	6	1	78	1.00
19513482--19513551	22	3.2	22	80	15	83	14	7	0	78	0.95
19513482--19513564	6	14.5	6	71	18	61	14	6	1	78	1.00
19513493--19513551	22	2.7	23	87	12	88	13	6	0	79	0.92
19513540--19513564	13	1.9	13	100	0	50	16	0	4	80	0.87
19514399--19514447	21	2.3	21	79	10	55	48	6	0	44	1.27
19516021--19516065	2	24.0	2	80	13	51	53	0	0	46	1.00
19521414--19521460	22	2.2	20	78	14	51	61	0	6	31	1.21
19522932--19522959	12	2.3	12	100	0	56	25	14	14	46	1.82
19523460--19523490	3	10.7	3	93	6	55	29	0	0	70	0.87
19526644--19526698	3	18.3	3	100	0	110	32	0	0	67	0.91
19528582--19528616	17	2.0	18	88	5	54	48	0	0	51	1.00
19528685--19528732	16	3.2	14	75	13	51	50	0	2	47	1.12
19529761--19529810	23	2.1	23	85	3	64	38	4	0	58	1.17
19532113--19532142	4	7.8	4	92	7	53	76	0	23	0	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19536667--19536943	140	2.0	143	79	4	303	35	12	12	40	1.80
19537977--19538046	12	5.8	12	72	12	63	50	32	0	17	1.46
19537972--19538054	24	3.4	24	86	9	123	46	36	0	16	1.48
19543327--19543385	30	1.9	31	86	3	84	5	16	10	67	1.37
19543870--19544278	145	2.8	145	81	5	461	39	14	14	31	1.86
19543875--19544411	145	3.7	142	77	8	460	39	13	15	32	1.86
19551216--19551398	42	4.3	43	81	5	203	30	10	13	45	1.77
19551216--19551400	84	2.2	85	84	6	241	30	10	13	44	1.78
19552657--19552706	20	2.5	20	81	12	50	36	2	4	58	1.29
19556428--19556471	22	2.0	22	90	0	70	34	11	11	43	1.77
19560328--19560371	22	2.0	22	91	8	72	31	9	13	45	1.75
19565751--19565892	70	2.0	70	86	2	196	40	11	24	23	1.87
19570173--19570221	25	2.0	25	87	0	71	28	16	14	40	1.87
19574015--19574072	25	2.4	24	85	5	80	25	20	15	37	1.92
19577168--19577233	33	2.0	33	100	0	132	33	15	15	36	1.88
19586569--19586613	23	2.0	23	82	8	56	20	8	2	68	1.27
19589387--19589422	12	2.8	13	91	4	56	55	0	0	44	0.99
19590651--19590685	12	2.9	12	95	0	61	28	17	0	54	1.43
19591404--19591468	34	1.9	33	84	9	87	46	3	6	44	1.44
19591499--19591533	11	3.2	11	92	8	54	57	0	0	42	0.99
19591813--19591853	22	1.9	21	90	5	64	36	29	0	34	1.58
19598154--19598203	13	3.8	13	79	10	57	68	6	2	24	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19599470--19599518	18	2.7	17	84	9	53	10	6	4	79	1.03
19599509--19599557	14	3.4	14	82	2	53	30	0	4	65	1.11
19599502--19599545	7	6.3	7	89	0	52	22	0	4	72	1.02
19599502--19599557	28	2.0	28	82	3	67	28	0	3	67	1.07
19600246--19600277	3	10.7	3	100	0	64	31	0	0	68	0.90
19613764--19613798	18	1.9	18	88	0	52	45	2	0	51	1.16
19616129--19616182	21	2.8	21	76	23	64	55	3	0	40	1.17
19624506--19624549	21	2.1	21	91	8	72	38	4	9	47	1.56
19630857--19630897	19	2.2	19	95	0	73	29	26	29	14	1.95
19633334--19633384	27	2.0	27	85	14	72	52	1	1	43	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131