genome.fa.s2.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  57  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11634750--11635163	147	2.9	144	79	5	395	34	15	12	37	1.85
11635776--11635818	22	2.0	22	81	9	52	11	2	18	67	1.32
11636527--11636699	7	25.7	7	74	10	137	46	41	1	11	1.48
11636528--11636705	20	8.9	20	82	4	189	47	41	1	10	1.46
11636541--11636653	27	4.2	27	79	6	113	47	40	0	11	1.40
11636602--11636699	27	3.7	27	77	10	76	44	42	2	10	1.49
11638560--11638687	35	3.7	35	80	1	114	21	19	9	49	1.76
11638606--11638729	35	3.6	35	83	5	128	19	19	10	50	1.75
11638558--11638707	70	2.2	69	78	3	167	20	20	11	48	1.80
11638887--11638979	35	2.7	36	80	6	93	20	17	10	51	1.74
11639424--11639536	35	3.2	35	72	5	111	22	23	10	44	1.83
11639436--11639553	35	3.4	35	76	4	121	20	20	11	48	1.79
11639575--11639723	74	2.0	74	96	0	271	19	17	10	53	1.72
11639573--11639694	34	3.4	34	64	16	84	19	15	9	54	1.68
11639580--11639806	74	3.2	69	83	6	197	20	16	9	53	1.71
11640610--11640941	140	2.3	141	79	7	318	29	15	15	39	1.88
11641796--11641943	19	7.9	18	72	15	95	46	31	1	20	1.59
11641764--11641942	38	4.7	39	80	8	156	47	32	1	18	1.56
11641795--11641956	75	2.2	75	82	0	198	46	32	1	19	1.60
11641946--11641990	18	2.4	18	92	3	72	40	37	0	22	1.54
11641949--11642148	6	32.0	6	66	20	54	43	33	3	21	1.68
11642043--11642088	24	1.9	24	86	8	67	43	30	4	21	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11642083--11642142	18	3.2	18	92	4	93	41	33	5	20	1.74
11647130--11647154	10	2.5	10	100	0	50	40	0	20	40	1.52
11650466--11650512	11	4.5	10	79	15	51	80	2	14	2	0.89
11651912--11651944	17	1.9	17	88	11	50	21	3	18	57	1.53
11653883--11654176	7	44.4	7	71	12	169	46	36	0	17	1.51
11653908--11654044	39	3.5	40	89	4	190	46	35	0	17	1.48
11653910--11654083	13	13.8	13	70	14	123	46	35	0	17	1.49
11653883--11654176	33	8.9	33	76	8	190	46	36	0	17	1.51
11653904--11654079	26	6.9	26	72	16	145	45	37	0	17	1.48
11653896--11654084	20	9.5	20	72	13	62	46	36	0	16	1.48
11654028--11654091	27	2.4	28	84	10	89	46	37	0	15	1.46
11653904--11654162	13	19.6	13	71	10	100	45	35	0	18	1.53
11655156--11655361	25	8.2	25	79	7	211	30	12	8	48	1.71
11655156--11655361	51	4.1	50	78	6	202	30	12	8	48	1.71
11655146--11655340	76	2.6	74	87	7	268	31	12	8	47	1.71
11655903--11655955	19	3.1	16	80	19	63	77	3	15	3	1.06
11655892--11655938	24	1.9	24	87	12	69	76	2	17	4	1.04
11657503--11657542	20	2.0	21	90	5	64	62	7	17	12	1.52
11660969--11661014	20	2.4	19	85	3	65	56	17	2	23	1.52
11660933--11660994	13	4.8	13	72	7	63	53	20	4	20	1.64
11660933--11661001	26	2.7	26	93	4	113	53	20	4	21	1.62
11663121--11663166	23	2.0	23	95	0	83	39	2	28	30	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11663584--11663623	17	2.5	15	92	8	62	77	2	0	20	0.88
11671239--11671279	3	13.7	3	94	0	73	68	29	0	2	1.03
11671714--11671764	25	2.0	25	84	3	66	47	31	7	13	1.72
11673934--11674865	236	4.0	234	83	3	1106	32	9	12	45	1.74
11673915--11674865	468	2.0	470	84	2	1225	32	9	12	45	1.74
11683195--11683243	8	5.9	8	80	15	55	83	2	12	2	0.82
11683197--11683247	10	5.1	10	76	9	50	82	1	13	1	0.85
11683728--11683795	19	3.6	18	72	21	52	67	0	25	7	1.16
11683736--11683813	19	4.2	19	77	12	65	69	1	24	5	1.16
11683741--11683821	13	6.4	13	72	17	55	71	1	23	3	1.09
11683773--11683827	19	2.8	19	75	2	56	74	1	21	1	1.01
11684731--11684868	61	2.3	61	82	2	161	36	19	14	29	1.92
11684944--11685216	33	8.2	33	71	11	105	34	18	16	30	1.93
11685542--11685725	31	5.9	31	77	0	152	22	26	13	38	1.90
11685322--11685728	206	2.0	207	81	4	482	22	23	14	40	1.90
11685542--11685710	62	2.7	62	86	0	221	22	27	13	36	1.91
11685648--11685875	84	2.7	84	81	4	244	22	22	13	41	1.89
11685740--11686083	146	2.4	146	75	5	354	26	22	11	40	1.87
11685969--11686099	31	4.2	31	79	9	151	26	21	9	42	1.82
11686108--11686172	31	2.1	31	85	0	85	24	26	9	40	1.85
11686146--11686222	31	2.5	31	76	0	82	19	25	14	40	1.89
11686343--11686403	11	5.8	10	74	14	52	81	4	0	13	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11686710--11686747	6	5.9	7	90	9	55	57	0	0	42	0.98
11686710--11686747	13	2.9	13	81	14	51	57	0	0	42	0.98
11689455--11689530	13	5.8	13	72	9	55	51	21	3	23	1.64
11689463--11689530	26	2.6	27	83	6	86	51	22	4	22	1.65
11689463--11689543	26	3.1	26	80	7	85	51	22	7	18	1.70
11692232--11692288	27	2.1	27	86	3	78	78	0	14	7	0.94
11692245--11692279	18	1.9	18	100	0	70	80	0	14	5	0.89
11692736--11692777	17	2.5	17	88	7	59	78	0	9	11	0.96
11692750--11692783	17	2.0	17	88	0	50	82	0	8	8	0.85
11694395--11694432	20	1.9	20	84	10	51	57	2	18	21	1.52
11695154--11695210	30	1.9	30	85	0	78	35	15	19	29	1.93
11695236--11695296	32	1.9	32	84	15	83	36	19	18	26	1.94
11695154--11695303	31	4.9	31	70	18	100	34	16	20	28	1.95
11695280--11695349	31	2.2	32	85	7	90	44	15	12	27	1.83
11695287--11695354	32	2.2	32	86	7	95	41	20	13	25	1.88
11695158--11695334	93	1.9	91	80	11	200	35	17	18	28	1.94
11695478--11695741	47	5.6	46	78	6	188	29	11	11	46	1.76
11695527--11695741	94	2.3	94	85	3	272	30	11	11	46	1.76
11695639--11695853	112	1.9	112	86	1	306	29	13	9	46	1.76
11695687--11695817	65	2.0	65	83	2	165	28	14	9	47	1.76
11698275--11698319	13	3.4	13	84	6	63	46	35	0	17	1.49
11698275--11698497	7	33.7	7	69	16	111	45	37	0	16	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11698275--11698423	20	7.5	19	72	17	81	46	37	0	15	1.46
11698320--11698393	13	5.6	13	75	9	69	47	40	0	12	1.41
11698388--11698522	13	10.3	13	71	7	94	43	35	1	19	1.60
11698375--11698497	20	6.2	20	73	11	92	44	37	1	16	1.57
11704290--11704336	12	3.7	12	85	8	58	36	0	0	63	0.94
11704296--11704344	12	3.8	12	82	12	53	40	0	0	59	0.98
11704290--11704344	14	4.2	13	81	9	58	41	0	0	58	0.98
11707190--11707242	22	2.3	24	81	12	67	43	0	0	56	0.99
11709166--11709253	25	3.5	25	88	0	131	47	21	11	19	1.80
11709155--11709253	50	2.0	50	84	3	130	48	20	10	21	1.78
11709782--11709816	16	2.2	16	94	0	61	42	11	14	31	1.81
11711166--11711256	45	2.0	45	87	4	130	45	13	13	28	1.81
11713802--11713840	20	2.0	19	85	5	51	30	5	12	51	1.62
11714044--11714080	3	12.7	3	94	5	67	32	0	0	67	0.91
11714126--11714176	25	2.0	25	84	3	66	52	1	0	45	1.12
11714525--11714640	56	2.1	56	90	3	180	41	4	6	48	1.47
11729227--11729252	2	13.0	2	100	0	52	50	0	0	50	1.00
11729413--11729442	2	15.0	2	100	0	60	0	50	0	50	1.00
11731214--11731255	4	10.5	4	94	0	75	47	0	2	50	1.14
11733418--11733451	17	1.9	17	88	5	50	76	11	2	8	1.12
11743317--11743358	21	2.0	21	100	0	84	19	9	23	47	1.78
11745138--11745187	15	3.2	16	75	13	50	2	40	0	58	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11745138--11745187	16	3.2	15	82	5	55	2	40	0	58	1.10
11745403--11745438	14	2.7	13	91	8	63	61	11	0	27	1.30
11745678--11745706	4	7.2	4	100	0	58	24	0	0	75	0.80
11746761--11746801	20	2.0	20	85	4	55	29	2	0	68	1.03
11746802--11746860	21	2.8	21	94	0	109	35	5	10	49	1.59
11746842--11746872	14	2.2	14	94	0	53	35	6	12	45	1.68
11748511--11748550	15	2.5	17	80	11	50	37	0	5	57	1.21
11748883--11748935	19	2.7	19	77	11	54	56	0	1	41	1.10
11748955--11749024	32	2.2	32	82	5	79	57	10	1	31	1.41
11751593--11751624	16	2.0	16	93	0	55	9	6	18	65	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131