genome.fa.s2.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  73  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13749375--13749427	26	2.0	26	100	0	106	26	20	26	26	1.99
13750907--13750959	26	2.0	26	88	0	79	26	18	24	30	1.98
13749749--13752737	894	3.3	887	86	3	3923	25	24	24	26	2.00
13752692--13752763	26	2.8	26	91	4	119	31	16	22	29	1.96
13751981--13753476	766	2.0	761	87	2	2169	26	22	23	27	2.00
13754964--13760039	865	5.8	868	85	4	6406	25	23	24	25	2.00
13758414--13758463	26	1.9	26	95	0	91	32	16	26	26	1.96
13757650--13760039	901	2.7	888	86	3	3319	25	23	24	26	2.00
13759313--13759365	26	2.0	26	96	0	97	26	20	24	28	1.99
13760169--13760221	26	2.0	26	92	0	88	28	18	24	28	1.98
13769878--13769928	26	2.0	26	96	0	93	27	17	25	29	1.98
13768476--13770916	882	2.7	880	88	3	3454	24	22	25	26	2.00
13770760--13770810	26	2.0	26	92	0	84	25	17	27	29	1.98
13770925--13778115	903	8.0	905	85	4	9058	25	23	24	26	2.00
13774150--13774202	26	2.0	26	88	0	79	28	16	24	30	1.97
13777711--13777763	26	2.0	26	89	7	81	26	15	26	32	1.95
13778512--13778564	26	2.0	26	92	0	88	24	18	26	30	1.98
13779416--13779466	26	2.0	26	92	0	84	27	13	27	31	1.94
13778113--13785693	881	8.5	895	82	6	8308	25	23	24	26	2.00
13782057--13782109	26	2.0	26	96	0	97	24	16	28	30	1.97
13782944--13782996	26	2.0	26	85	0	70	32	16	22	28	1.96
13783177--13783206	12	2.5	12	100	0	60	6	26	66	0	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13784962--13787805	700	4.0	701	87	3	3894	26	23	23	27	2.00
13787787--13787839	26	2.0	26	92	0	88	28	20	22	28	1.99
13789861--13789910	26	1.9	26	91	0	82	30	12	24	34	1.91
13791657--13794062	713	3.4	713	87	4	3469	25	23	24	25	2.00
13794931--13794983	26	2.0	26	96	0	97	26	20	28	24	1.99
13795806--13795858	26	2.0	26	96	0	97	28	16	26	28	1.97
13796705--13796757	26	2.0	26	85	7	72	32	18	22	26	1.97
13795172--13799673	899	5.0	898	87	1	6181	25	24	24	25	2.00
13797601--13797653	26	2.0	26	92	0	88	26	20	26	26	1.99
13799404--13799456	26	2.0	26	92	0	88	26	16	28	28	1.97
13800840--13800890	26	2.0	26	96	0	93	27	17	27	27	1.98
13801733--13801785	26	2.0	26	92	0	88	28	18	24	28	1.98
13799964--13806053	899	6.8	889	84	4	7340	25	23	24	26	2.00
13802630--13802679	26	1.9	26	95	0	91	28	18	26	28	1.98
13803533--13803585	26	2.0	26	96	0	97	26	15	26	32	1.95
13799964--13806053	900	6.8	898	84	3	7570	25	23	24	26	2.00
13805323--13805373	26	2.0	26	92	0	84	31	17	25	25	1.97
13806474--13806502	6	4.8	6	100	0	58	68	13	0	17	1.20
13806537--13806875	59	5.7	59	85	8	467	33	13	7	44	1.73
13806908--13806983	10	8.4	9	78	17	70	80	0	5	14	0.88
13806908--13806992	26	3.2	25	79	11	82	78	0	4	16	0.91
13806896--13806966	8	8.6	8	77	16	74	80	0	5	14	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13807567--13807597	11	2.8	11	100	0	62	58	0	6	35	1.24
13807884--13807993	32	3.3	32	79	16	109	65	2	8	23	1.33
13807990--13808052	17	3.6	16	83	16	72	71	0	0	28	0.86
13807951--13808066	40	2.9	41	80	12	116	68	1	1	28	1.10
13807985--13808045	23	2.7	23	82	10	72	73	0	0	26	0.83
13807971--13808141	20	8.0	21	71	19	92	62	3	1	32	1.20
13807986--13808139	31	5.5	28	75	18	101	62	3	0	32	1.18
13807973--13808074	14	6.6	16	75	19	85	65	1	0	31	1.10
13808103--13808156	9	5.5	10	80	14	51	62	7	0	29	1.22
13808333--13808393	1	61.0	1	73	0	50	3	0	9	86	0.67
13808340--13808388	11	4.5	11	89	5	73	4	0	10	85	0.71
13808334--13808393	13	4.8	12	77	18	61	3	0	10	86	0.67
13808333--13808386	20	2.6	21	88	2	74	3	0	11	85	0.73
13808340--13808388	21	2.3	22	89	3	73	4	0	10	85	0.71
13808400--13808488	41	2.1	42	89	2	135	30	24	20	24	1.99
13808427--13808607	59	3.0	60	88	4	242	33	22	18	24	1.97
13808543--13808578	18	2.0	18	100	0	72	27	33	22	16	1.95
13808561--13808902	42	8.2	42	91	2	519	34	22	17	25	1.96
13808561--13808902	83	4.1	83	89	2	524	34	22	17	25	1.96
13808561--13808902	127	2.7	125	92	2	562	34	22	17	25	1.96
13810090--13810152	7	8.9	7	80	14	60	3	12	0	84	0.75
13810092--13810177	38	2.3	38	80	8	95	5	15	0	79	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13810109--13810181	19	3.8	19	75	17	71	4	17	0	78	0.91
13810515--13810539	11	2.3	11	100	0	50	0	8	0	92	0.40
13811630--13811692	31	2.0	31	100	0	126	28	6	33	31	1.82
13814104--13814505	59	6.9	58	82	5	495	34	13	7	45	1.72
13814519--13814597	8	9.0	9	80	15	78	82	0	5	12	0.83
13814518--13814597	33	2.3	35	85	14	112	81	0	5	13	0.85
13814518--13814580	8	7.6	8	86	13	92	84	0	3	12	0.75
13815492--13815592	31	3.2	31	83	6	107	65	2	8	22	1.35
13815519--13815592	31	2.4	31	93	0	121	64	2	9	22	1.36
13815582--13815640	17	3.4	17	86	9	75	72	1	0	25	0.93
13815599--13815661	8	8.2	8	74	20	55	66	1	0	31	1.01
13815603--13815667	22	3.1	22	81	14	59	66	1	0	32	1.01
13815582--13815669	6	15.0	6	69	21	53	68	2	0	29	1.02
13815600--13815667	11	5.9	11	70	21	50	66	1	0	32	1.01
13815703--13815756	9	5.5	10	80	14	51	62	7	0	29	1.22
13816624--13816676	26	2.0	26	96	0	97	28	20	24	26	1.99
13817526--13817578	26	2.0	26	100	0	106	26	20	26	26	1.99
13817691--13820585	703	4.1	712	86	3	3900	26	22	23	26	2.00
13820559--13820610	26	2.0	26	100	0	104	26	19	26	26	1.99
13821468--13821519	26	2.0	26	100	0	104	30	19	23	26	1.98
13819814--13832992	896	14.8	892	85	4	15894	25	23	24	25	2.00
13824147--13824199	26	2.0	26	92	0	88	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13825055--13825107	26	2.0	26	92	0	88	24	18	28	28	1.98
13826850--13826899	26	1.9	26	100	0	100	28	20	26	26	1.99
13827730--13827782	26	2.0	26	85	0	70	28	18	22	30	1.98
13828618--13828671	26	2.1	26	96	0	99	27	22	24	25	2.00
13832159--13832210	26	2.0	26	92	0	86	25	17	28	28	1.97
13833583--13833635	26	2.0	26	92	0	88	26	24	24	24	2.00
13834379--13834411	11	3.0	11	100	0	66	18	36	27	18	1.94
13834493--13834544	26	2.0	26	96	0	95	28	19	25	26	1.98
13835388--13835440	26	2.0	26	96	0	97	28	20	26	24	1.99
13836288--13836338	26	2.0	26	96	0	93	29	19	25	25	1.99
13833161--13843853	891	12.0	895	86	3	13680	25	24	24	25	2.00
13837178--13837227	26	1.9	26	95	0	91	30	20	24	26	1.98
13838081--13838133	26	2.0	26	89	7	81	28	18	26	26	1.98
13839846--13839903	26	2.2	27	93	3	100	29	22	22	25	1.99
13841628--13841680	26	2.0	26	96	0	97	26	22	24	26	2.00
13843411--13843462	26	2.0	26	92	0	86	28	15	26	28	1.96
13844933--13844985	26	2.0	26	96	0	97	26	22	26	24	2.00
13846413--13846465	26	2.0	26	96	0	97	30	20	20	28	1.98
13848175--13848227	26	2.0	26	96	0	97	28	20	24	26	1.99
13850204--13850639	234	1.8	238	86	3	628	22	24	30	21	1.99
13851191--13851243	26	2.0	26	92	0	88	26	16	26	30	1.97
13852099--13852151	26	2.0	26	100	0	106	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13850424--13853881	908	3.9	898	85	4	4363	25	23	24	26	2.00
13852995--13853045	26	2.0	26	96	0	93	27	13	29	29	1.94
13854060--13854112	26	2.0	26	92	0	88	28	18	24	28	1.98
13854961--13855013	26	2.0	26	96	0	97	26	18	26	28	1.98
13854034--13855943	901	2.1	900	87	1	2720	25	24	25	25	2.00
13858837--13858887	26	2.0	26	92	0	84	31	9	25	33	1.88
13859715--13859764	26	1.9	26	95	0	91	30	20	26	24	1.98
13859095--13861175	711	2.9	708	86	3	2618	25	22	24	27	2.00
13861160--13861210	26	2.0	26	88	0	75	23	11	27	37	1.90
13865977--13866050	26	2.8	26	89	0	121	32	17	22	27	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131