genome.fa.s2.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  85  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15446911--15446963	26	2.0	26	92	0	88	28	24	20	26	1.99
15446861--15447323	245	1.9	245	85	4	648	19	28	27	24	1.99
15448945--15448997	26	2.0	26	96	0	97	26	22	22	28	1.99
15447106--15451500	902	4.9	887	84	3	5550	26	24	23	25	2.00
15452334--15452381	24	1.9	24	84	16	62	29	22	18	29	1.98
15454129--15454181	26	2.0	26	96	0	97	28	26	18	26	1.98
15454155--15455512	694	2.0	694	91	0	2200	27	22	22	26	1.99
15455714--15455770	26	2.2	26	84	6	71	29	22	17	29	1.97
15455988--15456040	26	2.0	26	96	0	97	47	20	9	22	1.79
15456223--15456266	19	2.3	19	100	0	88	9	68	22	0	1.18
15456292--15456344	26	2.0	26	92	0	88	28	24	18	28	1.98
15456315--15457646	695	2.0	665	85	5	1770	28	22	22	26	1.99
15458046--15459336	706	1.8	708	89	2	2020	27	24	21	26	1.99
15460192--15460253	26	2.4	26	94	0	115	27	24	19	29	1.98
15461121--15461173	26	2.0	26	92	0	88	24	24	22	28	2.00
15460216--15465680	903	6.1	895	82	6	6168	25	25	23	25	2.00
15462914--15462966	26	2.0	26	100	0	106	26	22	20	30	1.98
15465581--15465633	26	2.0	26	92	0	88	28	20	18	32	1.97
15467289--15467338	26	1.9	26	91	0	82	24	26	20	30	1.98
15468185--15468237	26	2.0	26	92	0	88	26	26	20	26	1.99
15466407--15468978	897	2.9	893	87	3	3644	26	24	23	25	2.00
15469794--15469845	26	2.0	26	100	0	104	23	23	23	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15470584--15470938	179	2.0	181	84	6	477	21	25	28	24	1.99
15470866--15470918	26	2.0	26	96	0	97	28	24	20	26	1.99
15471768--15471820	26	2.0	26	89	7	81	30	24	16	28	1.97
15472669--15472721	26	2.0	26	92	7	90	26	26	22	24	2.00
15470725--15472912	901	2.4	899	83	3	2834	24	24	25	25	2.00
15472913--15472965	26	2.0	26	88	0	79	24	24	20	30	1.99
15473814--15473866	26	2.0	26	96	0	97	26	24	22	26	2.00
15473840--15479721	857	6.8	856	78	10	5431	26	24	23	25	2.00
15476433--15476483	26	2.0	26	92	0	84	31	27	13	27	1.94
15478156--15478208	26	2.0	26	96	0	97	26	24	20	28	1.99
15479511--15479567	26	2.2	26	83	0	69	59	12	5	22	1.53
15479259--15480255	513	1.9	512	90	2	1572	30	23	18	27	1.97
15480444--15480494	26	2.0	26	88	7	77	27	23	15	33	1.95
15482005--15482057	26	2.0	26	92	0	88	28	24	18	28	1.98
15482908--15482960	26	2.0	26	92	0	88	28	24	20	26	1.99
15481151--15489260	894	9.0	900	84	4	9906	25	24	23	25	2.00
15484720--15484772	26	2.0	26	92	0	88	24	24	20	30	1.99
15485608--15485685	26	3.0	26	90	0	129	28	29	16	25	1.97
15488311--15488363	26	2.0	26	88	0	79	26	22	22	28	1.99
15489208--15489286	26	3.0	26	98	0	149	26	20	22	30	1.98
15489049--15489471	211	2.0	211	87	2	609	20	27	28	22	1.99
15489419--15489471	26	2.0	26	100	0	106	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15491184--15491235	26	2.0	26	88	0	77	28	26	15	28	1.96
15492086--15492138	26	2.0	26	92	0	88	26	24	18	30	1.98
15493831--15493935	26	4.0	26	96	0	183	27	24	19	28	1.98
15494623--15494680	26	2.2	26	90	3	89	29	24	18	27	1.98
15493879--15496102	743	3.0	736	86	4	2959	27	23	22	26	2.00
15498375--15498427	26	2.0	26	92	7	90	26	26	16	30	1.97
15498188--15503594	893	6.1	893	84	5	6764	26	24	23	25	2.00
15500159--15500211	26	2.0	26	96	0	97	28	24	20	26	1.99
15501058--15501110	26	2.0	26	92	0	88	26	18	20	33	1.96
15502828--15502880	26	2.0	26	96	0	97	26	24	20	28	1.99
15501950--15503594	903	1.8	900	89	2	2613	25	24	24	25	2.00
15503568--15503646	26	3.0	26	94	0	140	27	25	18	27	1.98
15502828--15504353	755	2.0	762	88	4	2292	26	23	23	26	2.00
15503594--15511673	875	9.1	896	84	4	9918	25	24	23	25	2.00
15510703--15510753	26	2.0	26	88	0	75	25	27	15	31	1.96
15511592--15511642	26	2.0	26	100	0	102	23	27	19	29	1.98
15511433--15511857	185	2.3	184	90	0	643	21	29	28	20	1.98
15511777--15511828	25	2.0	26	88	3	79	26	25	21	26	1.99
15513969--15514019	26	2.0	26	96	0	93	31	25	13	29	1.94
15514868--15514920	26	2.0	26	96	0	97	26	24	20	28	1.99
15513672--15515660	901	2.2	895	83	4	2577	25	24	23	26	2.00
15513672--15515705	905	2.3	896	83	4	2597	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15515712--15519841	879	4.7	873	86	2	5446	26	24	23	25	2.00
15518175--15519839	899	1.8	903	88	2	2533	26	24	23	25	2.00
15519072--15520556	715	2.1	717	88	1	2244	27	24	22	26	2.00
15520659--15520711	26	2.0	26	92	0	88	28	24	18	28	1.98
15521296--15521351	26	2.2	26	87	6	78	32	17	19	30	1.95
15522178--15522230	26	2.0	26	96	0	97	28	26	18	26	1.98
15521117--15524947	890	4.3	890	82	6	4491	26	24	24	24	2.00
15524851--15524900	26	1.9	26	95	0	91	24	26	22	28	1.99
15525560--15525612	26	2.0	26	89	7	81	30	20	18	30	1.97
15526459--15526511	26	2.0	26	96	0	97	26	24	22	26	2.00
15526579--15526612	14	2.4	14	95	0	59	26	41	20	11	1.87
15528254--15528306	26	2.0	26	92	0	88	28	24	18	28	1.98
15525170--15538209	903	14.4	880	72	11	6425	25	25	24	25	2.00
15525170--15530820	903	6.3	879	84	5	6750	25	24	24	25	2.00
15530031--15531436	716	2.0	714	90	0	2195	26	23	23	26	2.00
15531444--15531474	12	2.6	12	94	0	53	0	61	25	12	1.32
15531652--15531704	26	2.0	26	92	0	88	32	24	15	28	1.95
15533808--15533860	26	2.0	26	92	0	88	30	26	15	28	1.96
15534711--15534763	26	2.0	26	96	0	97	28	26	18	26	1.98
15535579--15535631	26	2.0	26	96	0	97	28	26	18	26	1.98
15536483--15536535	26	2.0	26	96	0	97	26	24	20	28	1.99
15532899--15538209	902	6.0	902	85	4	6659	25	25	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15538940--15538992	26	2.0	26	96	0	97	26	28	20	24	1.99
15539402--15539454	26	2.0	26	88	0	79	26	24	20	28	1.99
15538574--15539477	462	2.0	462	86	2	1287	23	28	25	22	1.99
15540305--15540357	26	2.0	26	88	0	79	26	28	18	26	1.98
15539037--15541105	903	2.3	903	92	0	3363	25	25	24	24	2.00
15541915--15541967	26	2.0	26	96	0	97	28	26	20	24	1.99
15542818--15542870	26	2.0	26	96	0	97	26	24	20	28	1.99
15541145--15543593	903	2.7	899	88	2	3555	26	24	23	25	2.00
15546064--15546116	26	2.0	26	96	0	97	26	28	20	24	1.99
15545228--15547600	871	2.7	878	86	3	3112	26	23	23	26	2.00
15546854--15546901	21	2.3	21	100	0	96	31	20	35	12	1.90
15546951--15547003	26	2.0	26	92	0	88	26	22	20	30	1.98
15549483--15549535	26	2.0	26	92	0	88	28	24	18	28	1.98
15548188--15551150	890	3.3	889	85	4	3831	26	24	23	25	2.00
15550373--15550425	26	2.0	26	96	0	97	26	24	20	28	1.99
15551760--15553242	712	2.1	711	88	2	2210	26	23	23	26	2.00
15553363--15553415	26	2.0	26	88	0	79	32	24	16	26	1.97
15564540--15564592	26	2.0	26	92	0	88	26	26	20	26	1.99
15561968--15567593	882	6.4	886	82	8	6503	25	25	23	25	2.00
15567618--15567668	26	2.0	26	88	0	75	31	21	15	31	1.95
15567734--15568583	423	2.0	423	88	2	1262	29	20	21	27	1.98
15569657--15569715	26	2.3	26	88	5	86	28	25	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15570549--15572032	708	2.1	717	88	2	2195	27	24	22	25	2.00
15572170--15574343	716	3.1	697	86	5	2999	26	24	23	26	2.00
15577334--15577386	26	2.0	26	88	0	79	28	24	18	28	1.98
15578201--15578253	26	2.0	26	96	0	97	28	22	20	28	1.99
15577459--15587393	907	11.1	903	85	3	12424	25	24	24	25	2.00
15580013--15580065	26	2.0	26	96	0	97	26	26	22	24	2.00
15580891--15580943	26	2.0	26	92	0	88	28	24	18	28	1.98
15583576--15583626	26	2.0	26	88	0	75	33	23	13	29	1.93
15584475--15584527	26	2.0	26	92	7	90	30	26	16	26	1.97
15586271--15586323	26	2.0	26	85	0	70	30	22	16	30	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131