Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  46  of  131  ( 15626 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9556592--9556787
73
2.7
73
84
3
268
17
20
16
45
1.86
9556699--9556897
110
1.8
110
86
0
290
23
18
11
47
1.80
9556626--9556975
183
1.9
182
80
1
405
21
18
12
46
1.82
9556628--9557154
73
7.2
73
76
4
283
20
17
13
48
1.81
9557205--9557245
6
7.2
6
83
10
50
82
12
4
0
0.81
9557205--9557245
17
2.4
17
87
0
55
82
12
4
0
0.81
9558665--9558709
19
2.4
19
85
7
56
20
2
2
75
1.01
9558997--9559030
12
2.8
12
90
0
50
52
0
0
47
1.00
9559182--9559373
29
6.8
28
78
11
153
48
30
2
18
1.60
9559231--9559309
15
5.4
14
73
13
63
45
31
2
20
1.64
9559243--9559323
15
5.8
13
73
13
54
50
29
3
16
1.62
9559241--9559347
14
7.6
13
71
16
54
50
29
2
16
1.60
9559184--9559351
58
2.9
57
80
6
171
49
29
1
19
1.58
9559315--9559375
21
3.0
21
70
13
56
52
29
1
16
1.53
9559385--9559429
14
3.1
14
81
6
54
46
26
4
22
1.70
9559541--9559583
15
2.9
15
92
0
68
53
30
0
16
1.43
9559536--9559583
15
3.3
14
85
5
60
56
27
0
16
1.41
9561725--9561793
24
2.9
24
75
0
75
36
11
13
39
1.80
9565125--9565152
2
14.0
2
100
0
56
50
0
0
50
1.00
9576568--9576689
51
2.4
51
98
1
235
17
25
20
36
1.94
9581528--9581569
11
3.8
11
87
0
66
23
0
26
50
1.50
9581527--9581569
22
2.0
22
95
0
77
25
0
25
48
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9581594--9581750
52
3.0
51
88
3
224
43
8
21
25
1.81
9583980--9584023
21
2.1
21
82
0
52
72
2
9
15
1.19
9584486--9584523
15
2.6
14
87
4
58
65
0
10
23
1.23
9591466--9591581
55
2.1
55
98
0
223
38
18
18
25
1.92
9596582--9596628
18
2.7
18
83
3
60
59
8
0
31
1.27
9596587--9596646
13
4.5
13
76
12
50
65
5
0
30
1.14
9597003--9597046
19
2.3
19
96
0
79
52
9
0
38
1.33
9597005--9597066
19
3.2
20
86
4
74
43
9
3
43
1.53
9597531--9597580
3
16.7
3
91
8
84
70
0
0
30
0.88
9599752--9599792
21
2.0
21
85
0
55
48
0
2
48
1.14
9599760--9599799
21
2.0
21
85
9
57
42
0
2
55
1.13
9600676--9600722
3
15.3
3
95
4
85
34
0
0
65
0.93
9601530--9601563
2
17.5
2
93
6
61
50
0
0
50
1.00
9604216--9604298
41
2.0
41
92
0
139
34
16
6
42
1.73
9611746--9611776
2
15.5
2
100
0
62
0
0
51
48
1.00
9616059--9616097
13
3.0
13
80
0
51
23
0
2
74
0.94
9619074--9619107
17
2.1
15
89
10
50
20
0
2
76
0.92
9619072--9619145
21
3.4
22
79
9
80
18
2
4
74
1.10
9619128--9619306
4
44.2
4
69
15
68
29
2
3
65
1.21
9619236--9619304
25
2.7
25
80
13
79
28
1
0
69
0.97
9619239--9619320
22
3.7
22
79
14
71
26
2
1
69
1.08
9619272--9619326
22
2.5
22
82
5
67
21
3
1
72
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9619325--9619376
24
2.2
24
82
6
61
13
9
3
73
1.23
9620226--9620326
5
19.6
5
69
18
57
14
5
2
76
1.10
9620240--9620326
17
5.2
17
71
17
67
13
5
2
78
1.03
9620343--9620900
59
9.7
57
83
6
635
45
6
12
35
1.69
9620344--9620900
117
4.8
116
88
4
763
45
7
12
35
1.69
9620928--9620969
10
4.0
10
87
9
57
11
0
2
85
0.68
9620931--9620963
6
5.8
6
86
13
52
12
0
0
87
0.53
9629467--9629517
17
3.0
17
85
8
77
84
0
3
11
0.75
9629469--9629517
8
5.9
8
88
7
71
85
0
4
10
0.71
9629467--9629518
9
6.0
9
88
4
72
84
0
3
11
0.74
9630532--9630789
43
6.1
43
89
3
287
24
18
22
34
1.96
9630970--9631018
17
2.8
17
82
14
55
20
0
2
77
0.87
9630968--9631047
23
3.4
22
73
21
72
18
2
3
75
1.07
9630968--9631019
6
8.7
6
83
12
63
19
0
1
78
0.84
9631116--9631210
20
4.7
20
74
20
65
28
3
1
67
1.13
9631140--9631208
21
3.0
22
83
10
77
28
1
0
69
0.97
9631030--9631197
4
41.8
4
70
17
66
28
2
3
65
1.22
9631031--9631187
11
14.1
11
67
18
67
29
1
3
64
1.21
9631118--9631200
19
4.2
20
71
21
50
27
2
1
68
1.09
9631176--9631224
21
2.3
21
86
6
64
20
4
2
73
1.10
9631145--9631222
21
4.0
21
73
17
60
26
2
1
69
1.09
9631228--9631278
24
2.2
24
92
3
86
13
3
5
76
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9632228--9632808
58
10.1
58
84
7
677
44
6
12
36
1.68
9632727--9632808
27
2.9
27
67
22
69
42
6
13
37
1.69
9641167--9641817
327
2.0
324
86
3
896
43
6
10
39
1.65
9643164--9643278
58
2.0
58
89
0
176
51
3
6
39
1.44
9644146--9644187
22
2.0
21
90
4
66
30
0
2
66
1.04
9644146--9644210
10
6.4
10
76
13
53
32
1
1
64
1.12
9644163--9644218
18
3.0
18
82
10
60
35
1
0
62
1.06
9644183--9644225
20
2.1
21
86
4
61
44
2
0
53
1.13
9644211--9644261
11
4.8
11
79
11
54
64
0
0
35
0.94
9644527--9644927
129
3.1
128
82
4
450
42
5
9
42
1.61
9644914--9645060
61
2.4
62
83
7
176
43
2
8
44
1.49
9648052--9648089
17
2.2
18
85
4
51
34
2
0
63
1.09
9648218--9648248
15
2.0
16
93
6
55
19
9
0
70
1.14
9649540--9649571
2
16.0
2
93
0
55
46
3
0
50
1.17
9651411--9651464
26
2.0
27
86
13
76
44
0
0
55
0.99
9652536--9652591
24
2.4
22
79
11
58
51
0
5
42
1.24
9653059--9653140
24
3.5
23
73
17
71
51
1
2
45
1.22
9652840--9653136
126
2.4
127
80
8
333
45
3
6
44
1.45
9659629--9659676
24
1.9
25
83
8
62
54
2
12
31
1.49
9670073--9670513
63
7.1
62
73
7
229
40
9
7
42
1.65
9670101--9670327
125
1.8
126
82
0
294
42
6
7
43
1.58
9670310--9670482
60
2.8
61
79
6
179
39
11
6
42
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9671595--9671640
20
2.3
20
88
7
67
28
10
15
45
1.79
9674702--9674727
13
2.0
13
100
0
52
30
0
15
53
1.42
9675600--9675707
30
3.6
30
75
7
103
45
1
10
42
1.48
9683979--9684049
22
3.3
21
73
22
67
66
0
4
29
1.11
9684432--9684470
9
4.1
9
84
12
51
64
0
0
35
0.94
9684431--9684471
20
2.1
19
90
4
64
60
0
0
39
0.96
9684664--9684697
16
2.1
16
88
5
50
50
0
0
50
1.00
9686544--9686755
106
2.0
106
98
0
406
43
12
11
31
1.79
9695298--9695357
20
2.9
21
69
14
52
16
10
5
68
1.35
9696517--9696564
18
2.6
19
87
9
73
22
2
6
68
1.23
9696618--9696643
13
2.0
13
100
0
52
76
0
0
23
0.78
9696661--9696700
21
1.9
21
89
0
62
52
2
7
37
1.43
9703928--9703981
25
2.1
25
82
3
63
77
3
14
3
1.04
9704930--9705006
38
2.0
39
90
7
122
22
11
18
48
1.80
9707199--9707300
53
1.9
53
84
4
134
50
11
8
29
1.69
9709840--9709966
18
7.1
18
72
13
100
26
4
34
33
1.78
9709840--9709938
33
2.9
33
78
4
117
26
5
32
36
1.78
9709919--9709959
21
2.0
21
95
0
73
31
2
39
26
1.70
9714029--9714069
20
2.1
19
86
4
55
58
2
2
36
1.24
9714299--9714441
50
3.4
39
73
20
117
21
62
1
14
1.40
9714299--9714441
40
3.4
40
71
19
119
21
62
1
14
1.40
9714335--9714439
50
2.1
50
91
1
176
21
61
1
14
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9714416--9714455
19
2.1
19
85
0
53
25
62
0
12
1.30
9718472--9718561
43
2.1
43
100
0
180
55
11
7
25
1.61
9718616--9718672
30
1.9
30
88
0
87
36
10
1
50
1.47
9719072--9719305
127
1.9
126
81
3
292
44
3
4
47
1.40
9719496--9719739
59
4.1
59
72
13
178
42
6
4
45
1.51
9719607--9719672
25
2.7
25
83
9
82
43
1
3
51
1.26
9739698--9739722
8
3.1
8
100
0
50
40
24
12
24
1.88
9743339--9743886
273
2.0
274
86
3
773
35
12
14
37
1.83
9750747--9750793
22
2.2
20
85
14
60
29
2
8
59
1.39
9750938--9751004
16
4.2
16
74
14
59
76
2
2
17
1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131