genome.fa.s2.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  28  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6676611--6676807	14	13.9	14	71	16	95	27	3	2	67	1.18
6676660--6676770	32	3.5	31	79	15	120	31	3	1	63	1.22
6676726--6676801	16	4.6	16	80	15	66	28	3	0	67	1.09
6676656--6676821	40	4.1	42	77	12	129	29	4	1	65	1.19
6677611--6677657	4	12.8	4	86	13	50	25	0	0	74	0.82
6677683--6677727	6	7.8	6	85	9	51	15	2	0	82	0.77
6677682--6677728	21	2.2	21	81	7	60	14	2	0	82	0.75
6677750--6677910	57	2.7	59	87	5	229	40	7	13	38	1.73
6688347--6688404	10	5.7	11	75	21	56	84	0	13	1	0.70
6688368--6688403	10	3.5	10	92	7	63	91	0	8	0	0.41
6688360--6688401	7	5.9	7	83	13	50	88	0	9	2	0.61
6688347--6688401	28	2.0	28	88	0	83	85	0	12	1	0.68
6688359--6688416	21	2.8	21	76	10	57	81	0	13	5	0.86
6689457--6689563	43	2.5	42	83	5	128	23	14	21	40	1.91
6689755--6689804	5	10.8	5	79	12	54	22	0	2	76	0.89
6689755--6689801	13	3.9	12	76	18	53	21	0	2	76	0.89
6689755--6689932	14	12.8	14	70	21	60	28	2	2	66	1.17
6689755--6689830	38	2.1	34	86	11	100	23	1	2	72	1.05
6689758--6689982	4	56.5	4	70	15	89	28	3	1	67	1.16
6689786--6689959	30	5.9	30	72	19	102	29	4	1	64	1.21
6689857--6689948	14	6.6	14	76	14	84	31	4	1	63	1.21
6689857--6689961	17	5.9	17	75	12	77	31	4	0	62	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6689795--6689965	20	9.3	19	72	20	100	29	4	1	64	1.22
6690865--6690922	6	10.2	6	85	10	70	17	1	0	81	0.78
6690865--6690921	23	2.5	22	86	10	80	17	1	0	80	0.79
6690858--6690912	28	2.0	28	89	7	85	20	1	1	76	0.97
6690865--6690920	17	3.3	17	80	14	62	17	1	0	80	0.80
6690868--6690914	5	8.8	5	90	4	58	17	2	0	80	0.80
6690977--6691027	17	3.0	17	85	0	57	43	11	3	41	1.60
6690930--6691082	76	2.0	74	83	5	191	45	6	9	38	1.62
6691037--6691124	42	2.1	42	84	0	113	45	5	9	39	1.60
6692824--6692861	19	2.0	19	85	10	51	65	0	0	34	0.93
6692829--6692893	15	4.6	14	68	9	51	50	0	1	47	1.10
6693126--6693174	2	24.5	2	100	0	98	51	0	0	48	1.00
6693173--6693453	148	1.9	150	84	5	381	51	4	4	38	1.43
6693598--6693680	42	2.0	42	92	0	139	28	13	7	50	1.68
6697090--6697119	13	2.2	14	94	5	53	46	0	0	53	1.00
6705515--6705567	26	2.1	25	92	3	88	50	0	3	45	1.19
6706083--6706108	2	13.0	2	100	0	52	50	0	0	50	1.00
6709781--6709823	12	3.3	13	81	18	54	41	0	0	58	0.98
6712070--6712114	24	2.0	22	82	8	54	20	6	40	33	1.78
6715458--6715484	7	3.9	7	100	0	54	14	0	0	85	0.61
6715566--6715597	6	5.3	6	100	0	64	34	0	65	0	0.93
6720464--6720757	98	3.0	98	98	1	563	38	6	25	29	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6721657--6721728	36	2.0	36	100	0	144	33	27	8	30	1.86
6730771--6730795	1	25.0	1	100	0	50	0	0	0	100	0.00
6732680--6733177	215	2.3	215	78	5	511	53	4	9	32	1.54
6732854--6733389	215	2.5	217	79	6	550	53	4	9	32	1.53
6738308--6738343	18	2.0	18	100	0	72	27	11	22	38	1.88
6739631--6740031	20	20.0	20	70	18	185	45	33	0	20	1.58
6739635--6740005	81	4.6	79	73	14	240	45	33	1	20	1.58
6739631--6739925	60	4.9	59	76	10	249	45	33	1	20	1.60
6739635--6739925	101	2.9	99	74	13	272	44	33	1	20	1.60
6739651--6739907	41	6.3	40	72	14	163	45	32	1	21	1.59
6739945--6740031	38	2.3	38	86	4	122	49	31	0	19	1.49
6739945--6740018	39	1.9	39	91	2	123	50	32	0	17	1.47
6739968--6740103	12	10.6	12	66	21	55	48	34	0	16	1.47
6740110--6740157	19	2.6	19	86	3	62	43	39	2	14	1.57
6740616--6740684	30	2.3	31	80	9	81	47	1	7	43	1.39
6744914--6744978	30	2.1	31	91	8	107	18	4	26	50	1.66
6745810--6745874	21	3.4	21	62	27	54	46	20	0	33	1.51
6745804--6745875	35	2.1	35	100	0	144	47	19	0	33	1.50
6750329--6750393	28	2.3	29	81	7	80	26	15	6	52	1.66
6753029--6753063	4	8.2	4	87	12	52	74	0	2	22	0.95
6753028--6753056	9	3.3	9	90	9	51	79	0	0	20	0.74
6753029--6753063	13	2.7	13	86	13	54	74	0	2	22	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6754184--6754541	44	7.9	44	73	8	216	43	13	12	29	1.82
6754187--6754550	136	2.7	134	81	5	390	44	13	12	29	1.81
6754332--6754537	92	2.2	92	84	5	258	45	14	13	27	1.82
6763421--6763484	26	2.5	25	78	9	67	48	6	4	40	1.49
6763608--6763632	13	1.9	13	100	0	50	80	4	0	16	0.87
6765828--6766161	180	1.9	181	89	1	528	31	20	18	29	1.96
6771811--6772149	130	2.6	126	77	8	306	41	10	12	35	1.78
6772091--6772270	63	3.0	60	76	10	179	38	8	10	42	1.70
6777484--6777520	13	2.8	13	87	0	56	24	8	5	62	1.44
6778723--6779461	161	4.6	158	78	4	644	32	10	15	41	1.82
6780919--6780976	21	2.8	21	97	0	107	31	8	24	36	1.85
6783213--6783247	13	2.7	13	86	0	52	25	5	5	62	1.40
6784393--6785189	322	2.5	320	80	4	825	33	10	14	41	1.79
6784426--6785189	161	4.7	164	79	6	747	34	9	14	41	1.78
6786452--6786534	33	2.5	34	88	9	134	33	9	19	37	1.84
6788864--6788917	19	2.8	20	81	13	69	62	0	0	37	0.95
6789186--6789223	18	2.1	18	100	0	76	39	15	10	34	1.82
6790110--6790137	3	9.3	3	100	0	56	0	35	0	64	0.94
6793481--6793640	80	2.0	79	86	7	225	13	17	18	50	1.77
6800906--6800939	15	2.3	15	100	0	68	0	73	0	26	0.83
6800906--6800939	5	6.8	5	89	0	50	0	73	0	26	0.83
6803626--6803721	33	2.9	34	78	10	99	36	6	17	39	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6806229--6806282	28	1.9	28	88	0	81	50	5	11	33	1.61
6808039--6808090	21	2.5	21	96	3	97	25	19	17	38	1.93
6808291--6808338	13	3.7	13	88	8	71	37	14	2	45	1.57
6810897--6810960	34	1.9	32	87	6	92	15	4	6	73	1.20
6811083--6811121	19	2.1	18	90	4	60	23	2	0	74	0.94
6811090--6811127	13	2.8	14	84	15	53	23	2	0	73	0.95
6812678--6812721	17	2.6	18	89	10	74	79	2	4	13	0.98
6822966--6823025	10	6.5	10	74	18	58	41	0	0	58	0.98
6823115--6823157	21	2.0	21	100	0	86	37	23	4	34	1.76
6824407--6824440	17	1.9	18	88	5	52	61	2	11	23	1.43
6825365--6825406	21	2.0	21	100	0	84	38	19	9	33	1.84
6825754--6825801	2	24.0	2	95	0	87	47	0	0	52	1.00
6826925--6826963	2	20.0	2	94	5	71	48	0	0	51	1.00
6827282--6827314	2	17.0	2	93	6	59	48	0	0	51	1.00
6829451--6829551	50	2.0	51	90	7	161	38	11	2	46	1.56
6831462--6831517	3	18.7	3	100	0	112	32	0	0	67	0.91
6834371--6834397	4	6.8	4	100	0	54	25	0	22	51	1.48
6837157--6837189	2	16.5	2	100	0	66	51	0	0	48	1.00
6838530--6838591	26	2.3	26	86	8	81	46	3	0	50	1.17
6838723--6838755	16	1.9	18	88	11	52	39	0	0	60	0.97
6841116--6841142	2	13.5	2	100	0	54	51	0	0	48	1.00
6841142--6841180	2	19.5	2	100	0	78	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6841715--6841739	5	5.0	5	100	0	50	20	60	0	20	1.37
6844154--6844211	27	2.1	28	81	12	66	55	1	0	43	1.10
6845647--6845673	3	9.0	3	100	0	54	66	0	0	33	0.92
6846756--6846809	6	9.0	6	89	0	81	62	1	3	31	1.23
6847603--6847651	3	16.3	3	95	0	71	26	0	6	67	1.14
6853007--6853922	159	5.7	162	79	5	833	41	13	10	34	1.80
6857704--6857808	52	2.0	52	94	0	183	33	19	16	31	1.93
6859572--6859605	16	2.1	17	88	5	52	64	0	0	35	0.94
6863017--6863069	17	3.1	17	82	15	65	20	1	5	71	1.16
6863001--6863077	33	2.4	32	79	16	79	23	1	6	68	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131