genome.fa.s2.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  82  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14986839--14990648	879	4.3	874	85	4	4852	26	24	24	25	2.00
14990104--14991308	606	2.0	606	88	1	1806	27	21	21	28	1.99
14992244--14992304	26	2.4	26	89	8	90	24	19	27	27	1.99
14992251--14992304	26	2.0	27	92	3	92	25	18	27	27	1.98
14993118--14993170	26	2.0	26	88	0	79	30	18	24	26	1.98
14994016--14994066	26	2.0	26	92	0	84	31	17	27	23	1.97
14990710--14996705	867	6.8	895	83	6	7239	25	23	24	26	2.00
14998293--14998344	26	2.0	26	92	0	86	25	17	28	28	1.97
14996658--14999301	899	2.9	889	83	5	3165	25	23	24	25	2.00
14999186--14999238	26	2.0	26	96	0	97	26	15	26	32	1.95
14999853--14999931	26	3.0	26	96	0	149	26	18	26	27	1.98
15000762--15000814	26	2.0	26	89	7	81	28	16	24	30	1.97
15000947--15001025	26	3.0	26	100	0	158	26	20	26	26	1.99
15001073--15001123	25	2.0	25	88	0	75	23	21	45	9	1.82
15002200--15002252	26	2.0	26	92	0	88	30	20	22	26	1.98
15004000--15004104	26	4.0	26	100	0	210	26	20	26	26	1.99
15006745--15006797	26	2.0	26	96	0	97	28	20	24	26	1.99
15007600--15007652	26	2.0	26	92	0	88	24	18	26	30	1.98
15007411--15007896	244	2.0	242	85	1	650	24	32	22	19	1.98
15007653--15009699	908	2.3	895	88	2	3004	25	25	24	24	2.00
15009647--15009699	26	2.0	26	92	0	88	24	18	26	30	1.98
15013165--15014283	370	3.0	370	96	0	2006	22	25	34	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15021310--15022656	740	1.8	739	85	3	1891	26	27	23	23	2.00
15022493--15022545	26	2.0	26	96	0	97	30	24	16	28	1.97
15022519--15025852	877	3.8	879	85	4	4328	25	25	23	25	2.00
15025157--15025207	26	2.0	26	92	0	84	29	27	15	27	1.96
15025851--15025887	8	4.6	8	86	0	56	13	62	21	2	1.44
15025183--15027360	713	3.0	702	86	7	2809	26	24	23	25	2.00
15029868--15029917	26	1.9	26	91	0	82	24	26	22	28	1.99
15031481--15031533	26	2.1	26	93	6	92	30	24	18	26	1.98
15033909--15037171	872	3.7	861	85	4	4053	26	24	23	25	2.00
15038904--15040364	717	2.0	715	88	2	2180	26	23	23	26	2.00
15040495--15040547	26	2.0	26	96	0	97	28	26	20	24	1.99
15039623--15042957	899	3.7	894	86	3	4407	25	24	24	25	2.00
15041391--15041444	26	2.1	26	96	0	99	29	25	16	27	1.97
15043562--15046197	876	3.0	866	84	4	3441	25	24	24	25	2.00
15046171--15046249	26	3.0	26	94	0	140	27	27	17	26	1.98
15047270--15047322	26	2.0	26	92	7	90	30	26	16	26	1.97
15048157--15048209	26	2.0	26	92	7	90	30	22	16	30	1.96
15050134--15052971	903	3.1	903	88	2	4124	25	24	24	25	2.00
15052131--15052183	26	2.0	26	96	0	97	28	22	18	30	1.98
15053124--15053173	19	2.6	19	90	0	64	34	16	16	34	1.90
15055308--15057673	836	2.8	829	82	6	2875	26	24	22	26	2.00
15057864--15057916	26	2.0	26	100	0	106	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15058437--15058505	26	2.7	26	90	0	102	28	26	11	33	1.91
15060060--15060112	26	2.0	26	92	0	88	26	22	22	28	1.99
15060956--15061008	26	2.0	26	92	0	88	26	24	18	30	1.98
15063367--15063419	26	2.0	26	96	0	97	28	22	18	30	1.98
15061781--15064070	894	2.6	892	87	3	3150	27	23	22	26	2.00
15063850--15063893	17	2.4	19	81	7	56	50	11	13	25	1.75
15063562--15066142	685	3.7	684	88	3	3512	27	24	21	26	1.99
15066342--15068113	877	2.0	867	87	3	2576	25	25	24	24	2.00
15068089--15068139	25	2.0	26	96	3	95	31	21	19	27	1.97
15068480--15068532	26	2.0	26	96	0	97	26	24	20	28	1.99
15067814--15068580	393	2.0	388	87	2	1097	21	28	26	23	1.99
15069382--15069434	26	2.0	26	96	0	97	26	24	20	28	1.99
15068189--15070160	902	2.2	891	87	2	2781	25	25	23	25	2.00
15069408--15072260	718	4.0	718	87	2	3925	26	23	23	26	2.00
15072412--15072463	26	2.0	26	100	0	104	26	23	19	30	1.98
15073613--15076519	720	4.1	716	83	6	3651	26	23	23	26	2.00
15075758--15078319	891	2.9	894	86	3	3454	26	24	23	25	2.00
15077545--15079740	718	3.1	712	87	3	3135	27	24	23	25	2.00
15080749--15080800	26	2.0	26	100	0	104	23	26	23	26	2.00
15078978--15080995	894	2.2	885	84	6	2669	25	24	25	25	2.00
15081220--15081272	26	2.0	26	81	0	61	32	22	15	30	1.94
15086439--15086727	159	1.8	158	85	3	411	16	30	30	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15087734--15087809	26	2.9	26	84	0	107	27	31	15	25	1.96
15088588--15091949	885	3.8	882	86	4	4338	25	25	23	25	2.00
15093679--15093731	26	2.0	26	100	0	106	26	26	20	26	1.99
15093705--15095184	709	2.1	711	88	2	2186	26	24	23	26	2.00
15095288--15095338	26	2.0	26	92	0	84	25	27	19	27	1.99
15096141--15096193	26	2.0	26	96	0	97	26	24	20	28	1.99
15096167--15097602	704	2.0	702	92	1	2383	27	23	22	26	2.00
15099309--15099366	26	2.2	26	93	3	98	29	24	20	25	1.99
15098448--15110273	892	13.5	889	80	9	11742	25	24	24	25	2.00
15101031--15101083	26	2.0	26	89	7	81	32	26	15	26	1.95
15101882--15101932	26	2.0	26	92	0	84	33	27	11	27	1.92
15102753--15102805	26	2.0	26	100	0	106	26	26	20	26	1.99
15103629--15103681	26	2.0	26	92	0	88	26	26	20	26	1.99
15102732--15110273	897	8.6	889	80	9	7630	25	24	23	25	2.00
15106346--15106398	26	2.0	26	92	0	88	30	26	16	26	1.97
15108919--15108971	26	2.0	26	92	0	88	26	26	20	26	1.99
15110434--15110485	26	2.0	26	88	3	79	28	26	19	25	1.98
15111371--15112181	406	2.0	407	92	1	1369	35	20	16	27	1.94
15111778--15114046	900	2.6	864	84	7	2889	26	24	22	26	2.00
15113280--15113332	26	2.0	26	92	0	88	28	26	16	28	1.97
15114467--15114525	26	2.2	27	81	3	66	62	8	5	23	1.43
15113306--15114787	713	2.1	711	87	2	2189	26	24	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15114891--15114943	26	2.0	26	96	0	97	28	26	18	26	1.98
15115796--15115848	26	2.0	26	100	0	106	26	26	20	26	1.99
15114019--15117461	901	3.9	893	87	3	4525	25	25	23	25	2.00
15118271--15118323	26	2.0	26	100	0	106	26	22	20	30	1.98
15118297--15119779	710	2.1	711	88	3	2178	26	24	23	25	2.00
15120293--15121752	720	2.0	713	88	4	2141	27	23	22	26	2.00
15123608--15123658	26	2.0	26	88	7	77	29	29	15	25	1.96
15126132--15126184	26	2.0	26	96	0	97	28	26	18	26	1.98
15125385--15130055	891	5.3	867	82	7	5281	25	24	24	25	2.00
15127865--15127917	26	2.0	26	92	0	88	28	26	16	28	1.97
15127495--15130059	874	2.9	862	82	7	2809	25	24	24	25	2.00
15129630--15129682	26	2.0	26	96	0	97	26	24	20	28	1.99
15130439--15132803	857	2.7	865	84	5	2951	25	24	23	26	2.00
15132029--15136411	706	6.1	714	85	4	5623	26	23	22	26	2.00
15137379--15137431	26	2.0	26	92	7	90	30	26	16	26	1.97
15138280--15138332	26	2.0	26	92	0	88	28	24	18	28	1.98
15136517--15139968	897	3.9	897	86	2	4576	25	24	23	26	2.00
15139207--15142036	719	3.9	719	91	1	4209	26	23	22	26	2.00
15142649--15142701	26	2.0	26	88	0	79	30	22	18	28	1.98
15145153--15145205	26	2.0	26	100	0	106	26	26	20	26	1.99
15143361--15146945	900	4.0	888	85	5	4549	25	24	23	25	2.00
15146047--15146097	26	2.0	26	96	0	93	27	23	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15148461--15148513	26	2.0	26	96	0	97	28	26	18	26	1.98
15150363--15151709	716	1.9	712	88	3	2035	27	23	22	26	1.99
15152716--15152766	26	2.0	26	96	0	93	29	23	17	29	1.97
15150963--15162893	892	13.3	899	84	4	14226	25	24	24	25	2.00
15153566--15153618	26	2.0	26	96	0	97	28	26	18	26	1.98
15154461--15154513	26	2.0	26	100	0	106	26	26	20	26	1.99
15157179--15157231	26	2.0	26	92	0	88	26	26	18	28	1.98
15158080--15158132	26	2.0	26	100	0	106	30	26	16	26	1.97
15159878--15159930	26	2.0	26	96	0	97	28	26	18	26	1.98
15160783--15160833	26	2.0	26	96	0	93	31	23	15	29	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131