genome.fa.s2.2.7.7.80.10.50.1000.75.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  75  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14011102--14011154	26	2.0	26	92	0	88	28	18	24	28	1.98
14009693--14011876	730	3.0	723	86	6	2878	26	23	23	26	2.00
14011985--14015594	716	5.1	712	86	3	4814	26	23	23	27	2.00
14016435--14022473	878	6.9	875	85	4	7329	25	23	24	25	2.00
14019774--14019826	26	2.0	26	92	0	88	28	16	26	28	1.97
14025629--14025696	26	2.6	26	95	0	127	27	16	25	30	1.96
14026545--14026597	26	2.0	26	96	0	97	26	18	26	28	1.98
14027404--14027456	26	2.0	26	92	0	88	26	18	24	30	1.98
14029161--14029212	26	2.0	26	92	3	88	26	19	26	26	1.99
14030061--14030113	26	2.0	26	92	0	88	26	16	26	30	1.97
14030973--14031025	26	2.0	26	92	0	88	26	16	28	28	1.97
14028790--14031889	912	3.5	895	85	4	4166	25	23	24	25	2.00
14034066--14034118	26	2.0	26	92	0	88	28	18	24	28	1.98
14035562--14037597	710	2.8	717	85	4	2684	26	22	23	27	2.00
14037738--14037816	26	3.0	26	72	3	79	30	16	22	30	1.96
14039188--14039213	12	2.2	12	100	0	52	42	19	23	15	1.89
14039401--14039451	26	2.0	26	100	0	102	27	19	29	23	1.98
14040292--14040370	26	3.0	26	96	0	140	27	18	25	27	1.98
14038635--14041499	924	3.1	909	83	5	3304	25	24	24	25	2.00
14041216--14041267	26	2.0	26	92	3	88	26	19	25	28	1.98
14042327--14042403	26	3.0	26	94	3	138	27	19	24	28	1.99
14041511--14057578	902	17.9	903	82	5	17733	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14046634--14046663	8	3.8	8	95	0	51	3	80	16	0	0.85
14046800--14046929	26	5.0	26	89	3	183	28	19	22	30	1.98
14046800--14046929	51	2.5	51	88	2	179	28	19	22	30	1.98
14042369--14065059	902	25.3	877	76	10	16232	25	24	25	25	2.00
14050413--14050465	26	2.0	26	96	0	97	26	22	24	26	2.00
14051306--14051358	26	2.0	26	92	0	88	30	22	20	26	1.98
14053084--14053136	26	2.0	26	85	0	70	28	18	22	30	1.98
14053986--14054038	26	2.0	26	96	0	97	26	20	24	28	1.99
14054872--14054927	26	2.2	26	90	3	87	26	14	26	32	1.95
14056005--14056029	12	2.1	12	100	0	50	8	28	64	0	1.22
14056680--14056732	26	2.0	26	85	7	72	32	18	22	26	1.97
14056831--14058876	719	2.9	712	85	5	2750	26	22	23	26	2.00
14058967--14059018	25	2.1	25	92	0	86	28	23	23	25	1.99
14059213--14059264	25	2.1	25	92	0	86	28	23	23	25	1.99
14058945--14059418	246	1.9	246	97	0	905	22	29	26	21	1.99
14059394--14059446	26	2.0	26	96	0	97	26	22	24	26	2.00
14061177--14061229	26	2.0	26	88	0	79	32	20	20	26	1.98
14062078--14062130	26	2.0	26	92	0	88	28	18	24	28	1.98
14062974--14063033	26	2.4	26	91	5	97	25	25	23	26	2.00
14063887--14063937	26	2.0	26	92	0	84	31	17	21	29	1.96
14059365--14065059	903	6.4	903	84	4	7053	25	24	25	25	2.00
14065548--14065600	26	2.0	26	96	0	97	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14067170--14067221	25	2.0	26	96	3	97	26	21	25	26	1.99
14068063--14068115	26	2.0	26	96	0	97	26	18	26	28	1.98
14066458--14073684	893	8.2	899	84	5	8506	25	23	24	25	2.00
14070680--14070732	26	2.0	26	96	0	97	28	20	26	24	1.99
14073317--14073368	26	2.0	25	85	3	68	28	19	25	26	1.98
14074668--14074720	26	2.0	26	92	0	88	26	16	26	30	1.97
14075571--14075623	26	2.0	26	96	0	97	26	18	26	28	1.98
14074006--14077382	881	3.8	900	87	3	4794	25	23	24	26	2.00
14076464--14076516	26	2.0	26	96	0	97	28	20	24	26	1.99
14078075--14078127	26	2.0	26	92	0	88	26	20	26	26	1.99
14079639--14079690	25	2.0	26	88	3	79	28	23	25	23	1.99
14080435--14080484	26	2.0	25	88	4	73	28	20	26	26	1.99
14081501--14081553	26	2.0	26	92	0	88	26	16	26	30	1.97
14082404--14082455	26	2.0	26	100	0	104	26	19	26	26	1.99
14083290--14083342	26	2.0	26	100	0	106	26	16	26	30	1.97
14085086--14085138	26	2.0	26	88	0	79	28	22	24	24	2.00
14085988--14086040	26	2.0	26	88	0	79	26	16	24	32	1.97
14078312--14090860	898	14.0	893	81	7	13221	25	24	24	25	2.00
14086886--14086938	26	2.0	26	96	0	97	28	20	24	26	1.99
14088855--14088888	4	8.5	4	86	0	50	2	23	70	2	1.15
14090377--14090429	26	2.0	26	96	0	97	26	20	24	28	1.99
14091132--14091184	26	2.0	26	96	0	97	28	18	26	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14092027--14092084	26	2.2	27	93	3	100	27	20	24	27	1.99
14091316--14092847	736	2.1	736	87	2	2205	26	22	23	26	2.00
14093663--14093713	26	2.0	26	96	0	93	27	23	21	27	1.99
14092053--14094591	901	2.8	897	86	2	3528	25	23	24	26	2.00
14095403--14096853	706	2.0	707	88	2	2173	26	22	23	27	1.99
14096827--14096879	26	2.0	26	96	0	97	28	20	22	28	1.99
14096803--14097221	184	2.3	184	83	2	511	23	29	25	20	1.99
14097916--14097968	26	2.0	26	92	0	88	26	20	24	28	1.99
14098816--14098868	26	2.0	26	96	0	97	28	20	24	26	1.99
14096987--14103213	900	7.1	896	84	4	7396	25	24	24	25	2.00
14101445--14101497	26	2.0	26	92	0	88	30	20	22	26	1.98
14103237--14103273	4	9.2	4	100	0	74	0	24	75	0	0.80
14103925--14103977	26	2.0	26	92	0	88	26	20	24	28	1.99
14104822--14104873	27	1.9	27	84	0	68	32	19	17	30	1.95
14103290--14105693	887	2.7	893	88	2	3459	25	23	24	26	2.00
14106413--14106465	26	2.0	26	88	0	79	26	20	24	28	1.99
14107317--14107395	26	3.0	26	98	0	149	26	20	25	27	1.99
14110855--14110907	26	2.0	26	96	0	97	26	20	24	28	1.99
14108167--14112796	905	5.3	891	81	8	5228	25	23	24	25	2.00
14111750--14111802	26	2.0	26	88	0	79	26	15	28	30	1.96
14115191--14115242	26	2.0	25	92	3	86	28	19	23	28	1.98
14112803--14115524	871	3.1	882	83	5	3302	25	23	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14115807--14115859	26	2.0	26	92	0	88	26	18	28	26	1.98
14114907--14116127	617	2.0	616	84	2	1612	24	25	28	20	1.99
14115523--14118823	908	3.7	901	84	4	4093	24	24	25	24	2.00
14118488--14118540	26	2.0	26	96	0	97	26	18	28	26	1.98
14119103--14119155	26	2.0	26	96	0	97	28	20	24	26	1.99
14118213--14119747	615	2.5	615	91	1	2466	24	27	27	20	1.99
14123057--14123109	26	2.0	26	96	0	97	28	20	24	26	1.99
14123961--14124013	26	2.0	26	100	0	106	26	20	26	26	1.99
14120567--14128375	892	8.9	892	84	5	9351	25	24	24	25	2.00
14124845--14124897	26	2.0	26	96	0	97	26	18	26	28	1.98
14125737--14125789	26	2.0	26	96	0	97	24	22	26	26	2.00
14127615--14129804	709	3.1	707	89	1	3213	25	23	24	26	2.00
14129779--14129830	26	2.0	26	96	3	97	26	21	25	26	1.99
14132787--14132837	26	2.0	26	92	0	84	27	17	23	31	1.97
14132059--14135428	899	3.8	881	84	6	4312	25	24	24	25	2.00
14134544--14134596	26	2.0	26	88	0	79	28	18	22	30	1.98
14136154--14136206	26	2.0	26	92	0	88	28	20	22	28	1.99
14134734--14136902	712	3.0	710	86	3	2844	26	23	23	26	2.00
14137755--14137807	26	2.0	26	96	0	97	28	20	24	26	1.99
14136246--14139457	869	3.7	866	83	5	4099	25	23	24	26	2.00
14140159--14146594	868	7.4	868	79	9	6223	25	23	24	26	2.00
14142861--14142885	12	2.1	12	100	0	50	8	28	64	0	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14145236--14145288	26	2.0	26	92	0	88	33	20	18	26	1.96
14146115--14146167	26	2.0	26	100	0	106	26	16	26	30	1.97
14146986--14148303	693	1.9	699	90	3	2098	26	22	23	27	1.99
14148406--14148458	26	2.0	26	92	0	88	28	18	24	28	1.98
14149311--14149363	26	2.0	26	92	0	88	26	20	26	26	1.99
14147679--14150283	902	2.9	893	87	4	3597	26	24	23	25	2.00
14150209--14150259	26	2.0	26	92	0	84	33	15	25	25	1.95
14151850--14151902	26	2.0	26	96	0	97	28	20	24	26	1.99
14151861--14151919	26	2.2	26	81	3	64	35	23	18	22	1.96
14150235--14152984	902	3.1	898	85	2	3667	25	23	24	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131