genome.fa.s2.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  8  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1813738--1813789	20	2.5	19	85	14	68	46	0	0	53	1.00
1813748--1813789	19	2.2	18	91	8	66	47	0	0	52	1.00
1813682--1813802	20	5.7	20	69	19	59	40	0	0	59	0.97
1813801--1813846	21	2.2	22	84	7	60	60	2	0	36	1.09
1815022--1815146	61	2.1	60	92	1	205	40	14	8	36	1.77
1817306--1817346	20	2.0	22	85	9	59	51	0	0	48	1.00
1819722--1819762	21	2.0	21	90	0	64	48	2	2	46	1.28
1832476--1832500	2	12.5	2	100	0	50	52	0	0	48	1.00
1833441--1833575	63	2.1	64	78	16	140	45	2	1	50	1.26
1837259--1837364	30	3.6	30	83	5	108	51	0	5	41	1.32
1843854--1843949	49	2.0	49	89	4	149	34	9	13	42	1.76
1851583--1851655	6	11.8	6	73	21	62	60	4	1	34	1.24
1851584--1851655	31	2.3	31	80	4	83	61	4	1	33	1.24
1852259--1852314	29	1.9	29	85	0	76	48	0	0	51	1.00
1862599--1862627	2	14.5	2	100	0	58	51	0	0	48	1.00
1870416--1870459	14	2.9	14	86	10	52	54	0	0	45	0.99
1870450--1870490	19	2.0	21	86	9	59	63	0	0	36	0.95
1871541--1871585	21	2.1	21	87	4	63	57	0	0	42	0.98
1871493--1871583	28	3.2	28	71	3	76	59	2	1	37	1.17
1879280--1879340	23	2.7	23	85	7	72	55	1	1	40	1.19
1900813--1900863	25	2.0	27	85	14	72	47	1	1	49	1.24
1909236--1909304	33	2.0	35	81	10	81	43	4	0	52	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1910273--1910313	20	2.0	20	86	9	57	43	31	2	21	1.66
1913522--1913574	24	2.3	24	80	6	56	49	0	1	49	1.12
1913670--1913722	20	2.5	22	77	20	58	50	0	1	47	1.12
1913719--1913767	23	2.2	22	88	3	71	69	0	0	30	0.89
1913753--1913816	33	1.9	34	87	9	96	54	3	1	40	1.25
1917099--1917124	4	6.5	4	100	0	52	23	0	0	76	0.78
1917631--1917672	6	7.3	6	82	17	54	30	0	0	69	0.89
1917631--1917666	19	2.0	17	89	10	54	30	0	0	69	0.89
1917623--1917672	17	3.0	16	81	16	57	34	0	0	66	0.92
1917623--1917680	12	5.0	12	76	16	59	36	0	0	63	0.94
1921184--1921242	28	2.1	27	84	3	73	59	5	5	30	1.41
1927583--1927617	2	18.0	2	94	5	63	48	0	0	51	1.00
1927583--1927615	17	1.9	17	100	0	66	48	0	0	51	1.00
1930800--1930829	8	3.8	8	95	0	51	53	6	0	40	1.27
1931316--1931382	33	2.0	33	94	5	118	25	0	23	50	1.49
1955343--1955444	36	2.9	35	76	8	118	47	8	3	40	1.53
1958332--1958361	13	2.2	14	94	5	53	0	10	0	90	0.47
1958336--1958366	8	4.0	8	95	4	55	0	9	0	90	0.46
1961669--1961704	2	18.5	2	94	5	65	47	0	0	52	1.00
1967848--1967897	18	2.8	18	79	11	50	40	0	4	56	1.18
1968318--1968369	22	2.5	22	93	6	90	50	0	0	50	1.00
1968549--1968573	13	1.9	13	100	0	50	64	0	0	36	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1973962--1974086	30	4.2	29	81	7	135	37	4	1	56	1.28
1973962--1974086	59	2.1	60	83	7	157	37	4	1	56	1.28
1974168--1974202	10	3.5	10	88	0	52	74	0	0	25	0.82
1974121--1974194	30	2.5	29	83	14	82	62	1	0	36	1.04
1977497--1977591	8	11.6	8	68	18	54	38	1	1	58	1.12
1977493--1977652	29	5.7	29	71	15	95	40	1	3	54	1.27
1977618--1977704	21	4.0	21	71	14	68	48	0	2	49	1.13
1977746--1977882	11	12.8	11	70	16	101	41	2	0	55	1.15
1977736--1977832	45	2.2	45	83	3	115	42	4	0	53	1.20
1977748--1977880	45	3.0	46	81	12	161	41	3	0	55	1.15
1977737--1977884	21	6.8	22	71	20	116	41	3	0	55	1.16
1977548--1977886	29	11.5	29	65	20	109	42	2	1	53	1.22
1986229--1986280	10	5.2	10	75	9	52	51	1	1	44	1.23
1988245--1988299	2	27.5	2	100	0	110	50	0	49	0	1.00
1988249--1988315	14	5.0	13	92	7	52	47	0	49	2	1.16
1992936--1992993	27	2.1	27	90	0	89	34	20	12	32	1.90
1993535--1993582	23	2.1	23	100	0	96	20	27	16	35	1.94
2001187--2001228	22	1.9	22	85	9	59	83	4	7	4	0.91
2011717--2011764	19	2.6	19	83	3	62	52	2	0	45	1.12
2011742--2011797	29	1.9	29	85	7	78	53	1	5	39	1.34
2013369--2013393	11	2.3	11	100	0	50	60	0	0	40	0.97
2023986--2024014	2	14.5	2	100	0	58	48	0	51	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2026805--2026879	29	2.6	29	84	2	87	33	22	21	22	1.97
2035012--2035061	24	2.1	24	100	0	100	16	12	20	52	1.75
2040298--2040343	24	2.0	24	91	4	76	47	8	19	23	1.77
2044242--2044271	13	2.2	14	94	5	53	30	0	0	70	0.88
2048635--2048731	50	1.9	50	87	4	142	32	21	14	30	1.93
2054597--2054676	33	2.4	33	77	12	92	53	1	3	41	1.27
2054697--2054747	17	2.9	18	77	16	70	27	5	0	66	1.14
2054736--2054771	16	2.3	16	90	4	56	33	0	0	66	0.92
2055229--2055339	48	2.2	52	79	9	133	46	1	0	51	1.11
2055252--2055329	21	3.8	21	70	18	65	48	1	0	50	1.09
2055316--2055366	18	2.9	18	79	2	68	54	3	0	41	1.19
2055883--2055937	30	1.9	27	85	10	74	34	9	16	40	1.80
2057844--2057879	2	18.0	2	100	0	72	50	0	0	50	1.00
2060235--2060296	30	2.0	31	90	6	99	22	11	11	54	1.67
2062588--2062647	12	5.1	12	74	11	61	15	0	11	73	1.10
2063021--2063061	18	2.2	20	82	8	50	58	4	7	29	1.46
2062827--2063076	122	2.1	122	79	8	275	46	7	7	38	1.60
2067386--2067425	10	4.0	10	81	12	55	77	0	10	12	0.99
2067391--2067438	20	2.4	20	92	0	78	75	0	12	12	1.06
2067473--2067497	13	1.9	13	100	0	50	56	16	8	20	1.65
2068310--2068335	13	2.0	13	100	0	52	30	23	7	38	1.83
2069209--2069273	23	2.9	22	73	15	62	41	10	7	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2069426--2069485	18	3.3	18	70	9	59	28	6	10	55	1.58
2069722--2069767	22	2.1	22	84	8	58	34	6	10	47	1.64
2080027--2080063	17	2.1	19	90	10	60	83	2	13	0	0.74
2080145--2080188	21	2.1	21	100	0	88	29	4	9	56	1.50
2081041--2081101	29	2.2	27	85	5	77	52	0	0	47	1.00
2081491--2081546	27	2.1	26	83	9	69	35	0	8	55	1.31
2081683--2081716	17	2.0	17	94	0	59	38	0	0	61	0.96
2084105--2084133	3	9.7	3	100	0	58	34	65	0	0	0.93
2100913--2100959	15	3.2	15	79	14	53	51	2	0	46	1.13
2101249--2101284	18	1.9	18	88	5	54	75	5	0	19	1.00
2101243--2101293	18	2.9	17	80	11	50	70	3	1	23	1.14
2101468--2101495	14	2.0	14	100	0	56	50	0	0	50	1.00
2102691--2102785	45	2.1	44	81	9	111	52	0	3	44	1.17
2102720--2102792	9	8.0	9	71	18	53	53	0	0	46	1.00
2102720--2102793	19	3.5	19	67	28	51	52	0	0	47	1.00
2102879--2102927	14	3.6	14	77	5	55	55	2	0	42	1.11
2102880--2102921	18	2.3	18	80	8	50	54	0	0	45	0.99
2103392--2103420	14	2.1	14	100	0	58	37	20	0	41	1.53
2104394--2104468	33	2.3	33	86	6	100	46	4	2	46	1.35
2104408--2104502	31	3.1	29	82	11	93	45	5	5	44	1.49
2107721--2107752	2	16.0	2	100	0	64	50	50	0	0	1.00
2110465--2110519	27	2.1	26	82	3	65	25	45	9	20	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2112087--2112117	11	2.8	11	95	0	53	74	0	9	16	1.07
2112304--2112341	18	2.0	20	85	10	53	39	2	0	57	1.12
2116691--2116722	2	16.0	2	100	0	64	50	0	0	50	1.00
2121677--2121728	27	1.9	27	84	7	70	21	7	3	67	1.32
2121924--2121967	16	2.7	16	85	3	52	79	4	0	15	0.89
2121991--2122051	26	2.3	28	77	11	65	49	4	3	42	1.40
2122366--2122413	14	3.5	13	81	15	53	72	2	10	14	1.19
2129846--2129911	28	2.4	28	80	14	75	39	3	1	56	1.24
2130380--2130449	30	2.3	30	78	4	79	51	2	5	40	1.40
2136438--2136700	132	2.0	132	85	0	355	34	20	10	34	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131