genome.fa.s2.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  106  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18951020--18951242	120	1.9	119	89	1	347	33	11	6	48	1.65
18951170--18951316	74	2.0	74	82	5	181	38	8	2	50	1.48
18951235--18951279	17	2.8	16	93	6	74	40	0	0	60	0.97
18951238--18951280	16	2.7	16	88	0	68	41	0	0	58	0.98
18951190--18951339	74	2.0	75	82	10	182	41	7	2	48	1.45
18951917--18951962	21	2.2	20	85	14	58	65	8	2	23	1.32
18952223--18952265	12	3.5	12	81	12	52	72	0	2	25	0.97
18952484--18952788	58	5.3	59	79	10	308	44	7	11	36	1.69
18952668--18952697	14	2.1	15	93	6	53	53	0	0	46	1.00
18952484--18952791	115	2.7	115	80	4	327	44	7	11	36	1.69
18958734--18958816	8	10.4	8	77	19	84	77	0	12	10	1.00
18958734--18958816	27	3.1	27	80	16	102	77	0	12	10	1.00
18958735--18958816	15	5.7	15	75	23	77	78	0	10	10	0.98
18959901--18960033	46	2.9	46	87	6	189	37	10	14	37	1.80
18960032--18960269	25	10.2	24	69	15	106	37	8	13	39	1.76
18960042--18960154	46	2.5	46	86	0	154	39	7	12	39	1.72
18960066--18960223	71	2.2	71	92	2	255	39	8	12	38	1.75
18960032--18960269	117	2.0	116	89	2	361	37	8	13	39	1.76
18960137--18960272	46	3.0	46	90	4	220	37	8	15	38	1.77
18960068--18960244	71	2.5	69	87	5	223	39	9	13	37	1.76
18960295--18960333	20	2.0	20	89	0	60	38	10	17	33	1.84
18960835--18960938	41	2.5	42	81	10	115	26	8	17	47	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18960858--18961206	44	8.1	44	77	11	298	25	12	17	43	1.85
18961049--18961218	45	3.9	43	75	13	127	27	12	14	45	1.80
18960875--18961206	88	3.8	87	79	8	329	25	12	16	44	1.83
18963051--18963086	14	2.5	14	90	4	54	50	0	0	50	1.00
18963051--18963671	58	10.2	59	75	16	341	47	5	8	39	1.55
18963052--18963671	117	5.1	118	75	15	405	47	5	8	39	1.55
18963242--18963389	79	1.9	78	88	2	224	44	7	7	40	1.61
18963325--18963667	118	2.9	115	80	9	381	47	5	8	38	1.58
18963538--18963570	16	2.0	17	88	5	50	51	3	0	45	1.16
18963769--18963810	16	2.4	17	84	11	50	9	4	2	83	0.88
18964746--18964834	45	2.0	45	88	4	135	35	8	5	49	1.58
18964769--18965067	117	2.5	117	84	6	390	38	8	4	48	1.54
18964769--18965068	58	5.1	57	82	6	334	38	8	4	48	1.54
18964879--18964914	15	2.3	15	90	4	54	55	0	2	41	1.14
18964908--18964998	29	3.1	31	67	22	86	37	10	4	47	1.59
18964939--18965206	138	1.9	137	84	9	359	38	8	5	47	1.58
18965093--18965187	26	3.4	26	64	23	66	34	8	6	50	1.58
18964821--18965322	255	2.0	255	83	9	641	39	8	4	47	1.56
18965076--18965345	59	4.6	58	85	6	296	39	8	4	47	1.55
18965076--18965328	117	2.1	118	83	9	311	38	8	4	47	1.55
18964880--18965263	196	2.0	196	85	6	528	39	9	4	46	1.58
18965303--18965338	16	2.2	16	90	0	54	38	2	0	58	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18969776--18969861	16	5.5	16	69	26	60	51	1	2	45	1.21
18969755--18969804	25	1.9	27	92	8	86	54	0	0	46	1.00
18970003--18970036	17	1.9	18	88	5	52	52	0	2	44	1.16
18970490--18970552	23	2.8	22	76	11	56	60	0	4	34	1.18
18970499--18970573	23	3.1	24	79	11	73	58	1	2	37	1.20
18972868--18972892	13	1.9	13	100	0	50	88	8	0	4	0.64
18975806--18975930	48	2.7	49	90	7	197	56	4	8	31	1.49
18979682--18979719	19	2.0	20	89	5	60	50	0	13	36	1.42
18988966--18989008	21	2.0	21	86	8	61	58	0	9	32	1.30
18989649--18989674	2	13.0	2	100	0	52	50	0	0	50	1.00
18990261--18990308	20	2.4	20	89	6	71	27	2	2	68	1.11
19005911--19005940	2	15.0	2	92	0	51	46	0	0	53	1.00
19008943--19009513	287	2.0	287	90	2	896	42	14	17	25	1.88
19012594--19012634	22	1.9	22	85	5	57	17	24	17	41	1.89
19015158--19015231	30	2.5	29	72	12	78	31	5	1	62	1.26
19015374--19015433	26	2.3	27	79	5	68	36	6	0	56	1.26
19015497--19015559	23	2.7	23	88	9	85	73	3	3	20	1.12
19016787--19016816	10	3.1	10	95	4	53	36	0	0	63	0.95
19016789--19016818	9	3.2	9	95	4	51	36	0	0	63	0.95
19019165--19019257	11	7.5	12	68	19	50	58	5	0	36	1.21
19019168--19019233	28	2.4	26	81	16	80	56	7	0	36	1.28
19019237--19019312	10	7.9	10	73	19	63	60	2	1	35	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19019238--19019299	15	4.1	14	71	20	54	59	3	1	35	1.23
19019252--19019312	21	2.9	22	83	11	74	60	3	1	34	1.23
19019712--19019740	14	2.0	15	93	6	51	37	0	0	62	0.96
19021768--19021800	16	2.1	16	94	0	57	84	0	15	0	0.61
19023562--19023675	59	1.9	59	87	7	169	29	13	10	46	1.76
19029255--19029289	14	2.5	13	86	13	52	42	0	0	57	0.99
19033452--19033525	29	2.3	32	80	13	82	47	4	2	45	1.35
19033822--19033882	12	4.9	12	73	11	52	59	0	1	39	1.08
19034492--19034527	17	2.1	17	94	0	63	52	8	5	33	1.55
19037909--19037969	28	2.1	29	84	9	79	54	0	0	45	1.00
19038386--19038464	39	2.1	38	83	7	97	44	18	15	21	1.87
19038801--19038879	15	5.2	15	69	3	59	44	20	6	29	1.76
19041443--19041468	13	2.0	13	100	0	52	92	0	7	0	0.39
19052960--19052994	17	2.1	16	89	5	52	22	2	11	62	1.41
19059572--19059606	17	2.1	16	89	5	52	22	2	5	68	1.24
19060586--19060620	15	2.3	15	90	9	54	68	0	0	31	0.90
19068436--19068485	23	2.2	23	82	13	59	64	4	0	32	1.12
19068731--19068788	10	5.3	10	75	18	53	25	1	1	70	1.06
19069266--19069307	13	3.1	13	80	12	57	7	19	0	73	1.05
19069246--19069307	28	2.2	27	88	8	88	11	12	0	75	1.04
19069265--19069307	14	3.1	13	87	12	59	6	18	0	74	1.04
19069261--19069307	15	3.3	15	88	11	80	8	17	0	74	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19069577--19069622	12	3.8	12	82	0	56	36	0	2	60	1.09
19069614--19069683	29	2.4	30	79	13	90	48	2	2	45	1.32
19069748--19069776	12	2.5	12	94	5	51	13	10	0	75	1.04
19070452--19070518	7	9.0	7	79	14	64	8	14	1	74	1.13
19073428--19073469	20	2.0	21	86	13	61	45	0	0	54	0.99
19074355--19074431	36	2.1	36	83	9	93	54	0	9	36	1.32
19074428--19074487	20	3.4	17	76	15	59	65	3	1	30	1.19
19074434--19074512	37	2.2	35	86	6	106	60	2	1	35	1.18
19074454--19074525	15	4.2	16	72	18	56	59	2	1	36	1.20
19074568--19074624	19	2.8	21	82	15	75	52	0	5	42	1.24
19074566--19074630	19	3.3	19	74	6	67	52	3	4	40	1.38
19074568--19074634	21	3.3	21	77	12	68	53	1	4	40	1.30
19074745--19074802	20	2.9	20	85	10	66	41	1	5	51	1.34
19074745--19074784	10	4.0	10	84	9	55	42	0	7	50	1.30
19074747--19074810	20	3.3	19	84	4	65	35	1	4	57	1.29
19074798--19074835	17	2.2	17	90	9	60	21	0	5	73	1.02
19074788--19074891	55	1.9	54	82	9	131	30	2	4	61	1.31
19074894--19074990	38	2.5	40	76	17	105	32	4	4	58	1.36
19075904--19075993	25	3.7	23	71	18	65	50	0	7	42	1.31
19075966--19076034	20	3.3	20	66	7	57	52	2	10	34	1.50
19075977--19076045	21	3.3	21	69	23	65	49	5	7	37	1.55
19076266--19076349	41	2.0	41	86	0	114	48	3	10	36	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19076266--19076341	21	3.7	19	70	20	55	48	3	9	38	1.54
19076256--19076463	113	1.8	113	80	8	253	48	4	10	36	1.59
19076472--19076543	37	1.9	36	83	10	92	47	8	2	41	1.48
19080877--19080922	25	1.9	25	86	8	69	47	0	10	41	1.38
19082637--19082722	41	2.1	43	82	8	108	46	1	0	52	1.08
19082750--19082789	18	2.2	18	86	4	53	42	0	2	55	1.13
19083060--19083118	29	2.1	29	81	12	70	50	5	0	44	1.24
19085500--19085551	22	2.5	20	73	11	52	25	7	3	63	1.38
19085507--19085558	22	2.2	22	86	10	68	26	5	3	63	1.34
19085548--19085612	12	5.4	12	74	7	60	32	0	1	66	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131