genome.fa.s2.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  101  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18071029--18071077	17	2.8	18	81	9	66	34	18	8	38	1.80
18071092--18071130	19	2.1	19	85	4	53	38	12	5	43	1.65
18071117--18071180	17	3.8	17	75	8	60	32	14	14	39	1.85
18071167--18071215	17	2.9	17	93	0	80	40	16	6	36	1.73
18071317--18071352	16	2.2	16	90	0	54	41	8	13	36	1.75
18071410--18071444	17	2.1	17	88	0	52	37	14	8	40	1.76
18080780--18080814	18	1.9	18	88	0	52	85	2	8	2	0.79
18085663--18085700	17	2.2	17	95	0	67	28	31	2	36	1.71
18093089--18093127	10	3.9	10	86	0	51	33	2	20	43	1.65
18093089--18093127	20	2.0	20	89	0	60	33	2	20	43	1.65
18094234--18094490	142	1.8	141	79	8	297	32	12	12	42	1.80
18098113--18098164	22	2.4	21	90	6	77	48	28	1	21	1.61
18098113--18098155	11	3.9	11	100	0	86	53	27	0	18	1.45
18106740--18106784	21	2.1	21	87	0	63	24	24	24	26	2.00
18108311--18108370	19	3.0	19	80	7	57	36	1	5	56	1.31
18108770--18108807	17	2.2	18	85	4	51	28	5	0	65	1.14
18108936--18108972	16	2.1	19	85	14	53	62	8	8	21	1.49
18109957--18110003	21	2.2	22	85	11	62	2	12	6	78	1.02
18110243--18110277	18	1.9	18	88	11	54	40	2	22	34	1.69
18110445--18110530	9	10.5	8	80	11	52	11	11	1	75	1.10
18110443--18110515	9	8.6	9	80	10	91	10	12	0	76	1.02
18110443--18110515	17	4.3	17	78	13	87	10	12	0	76	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18110443--18110515	34	2.2	33	87	9	103	10	12	0	76	1.02
18111036--18111080	19	2.3	20	77	11	58	53	0	0	46	1.00
18111059--18111118	23	2.8	22	82	12	63	51	0	0	48	1.00
18113279--18113314	18	2.0	18	100	0	72	27	16	33	22	1.95
18120076--18120116	22	1.9	21	85	5	55	34	4	0	60	1.18
18121138--18121184	18	2.6	18	86	0	58	44	17	2	36	1.60
18123611--18123638	9	3.1	9	100	0	56	42	10	10	35	1.74
18123650--18123707	30	1.9	30	86	13	84	44	25	10	18	1.82
18126564--18126600	18	2.0	19	89	5	58	8	2	2	86	0.76
18126602--18126687	5	16.6	5	74	20	63	75	0	6	17	1.01
18126602--18126693	17	5.4	17	72	13	64	76	0	6	17	1.00
18126602--18126688	12	7.3	11	74	22	61	75	0	6	17	1.01
18126620--18126699	20	4.0	20	71	24	62	76	0	7	16	1.00
18126646--18126700	23	2.4	23	74	17	60	78	0	7	14	0.96
18127054--18127143	41	2.2	42	82	6	103	55	14	10	20	1.67
18127041--18127143	41	2.5	40	81	7	102	53	15	10	20	1.71
18132709--18132784	9	7.7	9	75	17	53	57	9	1	31	1.38
18132669--18132773	10	10.4	10	71	11	63	57	8	2	31	1.44
18132674--18132776	30	3.4	31	72	11	86	54	8	2	33	1.46
18132964--18133039	27	2.8	25	78	13	80	67	3	5	23	1.29
18132996--18133040	19	2.3	21	81	14	60	68	4	4	22	1.25
18133136--18133173	17	2.3	17	90	4	60	71	7	5	15	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18133303--18133376	28	2.9	24	70	18	60	25	4	4	66	1.27
18133375--18133428	17	3.2	16	82	10	63	22	5	5	66	1.34
18133375--18133443	18	4.0	18	84	3	72	23	5	7	63	1.42
18135425--18135656	113	2.1	112	90	0	356	38	16	7	37	1.77
18138465--18139276	413	2.0	408	82	4	1006	39	10	12	37	1.79
18139332--18139404	22	3.3	22	100	0	146	41	9	4	45	1.56
18141667--18141723	6	8.8	6	75	21	53	5	1	14	78	0.99
18141667--18141730	12	4.9	13	80	16	71	6	3	12	78	1.06
18141673--18141738	14	4.8	14	80	14	75	6	3	13	77	1.08
18141757--18141815	24	2.5	24	75	5	59	54	8	3	33	1.48
18141870--18141915	22	2.1	22	84	8	58	43	15	10	30	1.81
18142010--18142064	22	2.5	22	85	5	67	25	16	25	32	1.96
18142138--18142648	126	4.0	126	78	3	456	35	11	15	36	1.85
18142379--18142428	22	2.3	22	75	0	55	34	10	22	34	1.87
18142535--18142770	103	2.3	104	76	10	246	39	11	12	36	1.80
18143078--18143110	10	3.3	10	84	16	50	0	12	3	84	0.72
18153790--18154183	144	2.7	145	75	9	353	43	10	13	31	1.79
18159786--18159825	17	2.3	18	91	4	64	40	0	0	60	0.97
18159840--18159888	18	2.6	19	83	3	55	55	6	0	38	1.25
18159869--18159909	21	2.0	21	85	0	55	63	7	0	29	1.21
18160037--18160112	28	2.6	28	85	8	91	55	1	2	40	1.22
18160037--18160123	28	3.0	28	83	3	84	57	1	2	39	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18160153--18160209	20	2.8	20	74	12	62	52	3	3	40	1.35
18160193--18160252	21	3.0	20	80	9	68	51	0	3	45	1.17
18160151--18160267	29	3.9	29	77	10	94	50	1	5	42	1.34
18160185--18160261	20	3.9	19	80	9	84	49	0	5	45	1.24
18160219--18160275	20	2.9	21	84	10	75	40	0	8	50	1.33
18160228--18160302	10	7.5	10	80	4	62	34	1	6	57	1.33
18160248--18160301	11	5.2	11	76	10	51	27	1	7	62	1.32
18160441--18160511	10	7.1	10	81	9	65	33	1	7	57	1.34
18160403--18160511	50	2.2	49	82	4	123	38	1	6	53	1.37
18160457--18160522	29	2.2	29	86	7	89	39	1	4	54	1.30
18163329--18163361	14	2.3	15	89	5	50	54	33	0	12	1.37
18165213--18165266	10	5.1	10	78	10	54	79	1	16	1	0.91
18165213--18165270	22	2.7	22	79	12	75	79	1	17	1	0.90
18166242--18166296	22	2.5	22	88	5	76	49	27	1	21	1.60
18166477--18166508	17	2.0	17	88	11	50	43	0	6	50	1.27
18167262--18167312	27	1.9	26	84	4	66	74	1	1	21	1.02
18167261--18167319	26	2.3	26	72	18	68	74	1	1	22	1.00
18168346--18168480	37	3.6	37	77	0	126	33	17	8	40	1.80
18173172--18173231	26	2.3	26	78	13	70	75	1	16	6	1.10
18176435--18176475	21	2.0	21	85	0	55	46	29	0	24	1.53
18176436--18176476	14	2.9	14	86	10	57	48	26	0	24	1.51
18179754--18179966	107	2.0	107	99	0	417	24	14	23	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18179933--18179976	21	2.1	21	91	0	70	20	2	31	45	1.64
18180139--18180216	40	2.0	40	89	0	120	32	12	20	34	1.90
18181176--18181255	38	2.1	38	85	0	106	42	17	2	37	1.63
18184341--18184387	24	2.0	24	87	8	69	80	2	10	6	0.96
18185039--18185075	19	1.9	19	89	10	58	81	2	8	8	0.97
18189877--18189978	51	2.0	51	81	7	118	20	8	15	54	1.67
18190350--18190485	71	1.9	71	83	3	175	32	21	8	37	1.84
18191083--18191154	24	2.8	25	74	20	67	25	12	23	38	1.90
18191244--18191285	20	2.2	19	91	4	66	59	0	23	16	1.37
18191251--18191303	8	6.2	9	77	18	60	54	1	22	20	1.54
18191795--18191833	17	2.3	17	86	0	51	51	7	12	28	1.67
18191849--18191876	14	2.0	14	100	0	56	57	14	0	28	1.38
18191959--18192062	49	2.1	49	83	3	129	31	14	10	43	1.79
18191942--18192092	49	3.1	48	71	10	117	31	15	9	42	1.80
18194874--18194932	25	2.5	23	78	8	66	54	5	5	35	1.45
18194867--18194936	27	2.7	25	82	10	70	55	5	4	34	1.43
18196123--18196168	18	2.5	19	74	22	53	58	0	2	39	1.10
18206436--18206479	21	2.1	21	86	0	61	47	11	4	36	1.60
18206469--18206505	19	1.9	19	89	10	58	51	5	5	37	1.48
18206573--18206610	3	13.0	3	88	5	60	65	2	0	31	1.06
18206580--18206608	14	2.1	14	100	0	58	65	0	0	34	0.93
18206596--18206661	33	2.1	32	81	13	75	71	7	3	18	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18206644--18206698	19	2.8	19	78	10	58	80	5	5	9	1.03
18207056--18207116	30	2.0	30	87	0	86	60	9	3	26	1.43
18207600--18207655	12	4.4	12	76	12	58	14	7	1	76	1.07
18208433--18208468	17	2.1	17	94	0	63	47	11	19	22	1.80
18208472--18208528	16	3.5	16	71	4	51	49	8	12	29	1.70
18208449--18208526	33	2.4	33	82	4	95	48	8	14	28	1.73
18208862--18208994	22	6.0	22	67	8	72	45	11	9	33	1.71
18208818--18208981	90	1.8	89	84	1	220	43	10	9	35	1.72
18208863--18208991	45	2.9	45	80	6	154	46	10	9	34	1.70
18209148--18209221	34	2.2	34	90	0	121	43	20	8	28	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131