genome.fa.s2.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  83  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15163816--15163873	26	2.2	26	81	3	62	56	8	12	22	1.62
15164594--15164644	26	2.0	26	88	7	77	29	21	21	27	1.99
15166996--15167047	26	2.0	26	88	0	77	28	26	15	28	1.96
15169467--15169519	26	2.0	26	92	0	88	26	22	24	26	2.00
15169493--15170959	705	2.0	717	87	4	2174	26	23	23	25	2.00
15171074--15171124	26	2.0	26	92	0	84	31	25	15	27	1.96
15171098--15172476	707	2.0	693	88	3	2053	28	23	22	25	1.99
15172670--15172722	26	2.0	26	88	0	79	30	24	18	26	1.98
15171792--15174356	904	2.8	897	88	2	3682	25	25	23	24	2.00
15173573--15173624	26	2.0	26	88	0	77	28	26	15	28	1.96
15174332--15174382	26	2.0	26	96	0	93	27	25	19	27	1.99
15175980--15176032	26	2.0	26	88	0	79	26	22	24	26	2.00
15179501--15179553	26	2.0	26	96	0	97	26	24	20	28	1.99
15178633--15186687	895	9.1	891	77	8	6758	25	24	23	25	2.00
15176006--15186606	868	12.0	866	80	8	10793	25	24	24	25	2.00
15182127--15182178	26	2.0	26	100	0	104	26	26	19	26	1.99
15180801--15186687	885	6.7	865	81	7	6007	26	24	23	25	2.00
15183906--15183959	26	2.1	26	92	0	90	24	25	20	29	1.99
15184798--15184850	26	2.0	26	89	7	81	30	24	18	26	1.98
15181658--15186687	885	5.6	895	84	5	6167	26	24	23	25	2.00
15185699--15185751	26	2.0	26	85	0	70	33	24	15	26	1.95
15186582--15186632	26	2.0	26	96	0	93	31	27	13	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15187096--15187126	12	2.6	12	89	0	53	0	64	25	9	1.24
15188942--15188994	26	2.0	26	100	0	106	26	26	20	26	1.99
15190555--15190605	26	2.0	26	92	0	84	27	25	17	29	1.98
15192353--15192405	26	2.0	26	92	0	88	28	24	18	28	1.98
15194136--15194188	26	2.0	26	92	7	90	24	22	24	28	2.00
15189680--15197749	903	9.0	891	84	5	10009	25	25	24	25	2.00
15195016--15200334	902	5.8	902	79	10	5490	26	24	23	25	2.00
15197697--15197848	26	5.9	26	91	1	234	28	23	19	28	1.98
15197697--15197848	51	2.9	52	92	1	252	28	23	19	28	1.98
15197697--15197848	77	2.0	78	92	1	252	28	23	19	28	1.98
15197806--15200329	886	2.9	874	84	5	3330	26	24	23	25	2.00
15199583--15201060	713	2.1	717	88	2	2211	26	24	23	25	2.00
15202040--15202092	26	2.0	26	88	0	79	28	28	16	26	1.97
15202949--15203001	26	2.0	26	92	0	88	28	26	16	28	1.97
15203856--15203908	26	2.0	26	96	0	97	26	26	18	28	1.98
15200292--15205964	878	6.4	876	86	4	6884	25	24	24	25	2.00
15206307--15207784	711	2.1	707	88	1	2149	26	23	23	25	2.00
15208808--15209882	531	2.0	532	91	1	1726	28	23	19	28	1.98
15210026--15210078	26	2.0	26	88	0	79	30	18	20	30	1.97
15210911--15210966	26	2.2	26	96	0	103	28	23	19	28	1.98
15212710--15212762	26	2.0	26	96	0	97	26	26	18	28	1.98
15209340--15213684	888	4.9	890	84	5	5395	25	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15213603--15213655	26	2.0	26	92	0	88	32	22	16	28	1.96
15214665--15214717	26	2.0	26	88	0	79	24	22	24	28	2.00
15214506--15214924	185	2.3	186	84	3	533	22	27	28	21	1.99
15214850--15214902	26	2.0	26	89	7	81	26	24	20	28	1.99
15216645--15216697	26	2.0	26	92	0	88	28	26	18	26	1.98
15218425--15218479	26	2.1	26	93	0	92	27	25	21	25	2.00
15214691--15222677	903	8.9	897	79	7	8275	25	24	23	25	2.00
15220189--15220241	26	2.0	26	96	0	97	26	24	20	28	1.99
15220322--15220347	11	2.4	11	100	0	52	26	38	23	11	1.89
15221104--15221152	26	1.9	25	88	12	73	34	22	10	32	1.88
15221989--15222039	26	2.0	26	96	0	93	23	27	19	29	1.98
15218901--15222677	911	4.2	899	84	4	4806	25	24	23	25	2.00
15222015--15223368	694	1.9	695	89	1	2101	27	22	23	26	2.00
15222686--15225207	880	2.9	870	85	4	3247	25	24	24	25	2.00
15226945--15226997	26	2.0	26	85	0	70	26	22	20	30	1.98
15228716--15228768	26	2.0	26	96	0	97	28	26	18	26	1.98
15229622--15229671	26	1.9	26	95	0	91	26	24	20	30	1.98
15225168--15235084	898	11.1	897	85	3	12600	25	24	24	25	2.00
15232315--15232367	26	2.0	26	96	0	97	26	24	20	28	1.99
15233200--15233252	26	2.0	26	96	0	97	28	26	18	26	1.98
15234095--15234147	26	2.0	26	89	7	81	28	26	18	26	1.98
15234993--15235042	26	1.9	26	95	0	91	22	28	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15234840--15235313	247	1.9	245	83	2	619	21	25	29	22	1.99
15235240--15235292	26	2.0	26	96	0	97	26	24	20	28	1.99
15235085--15238623	897	4.0	900	86	2	4644	25	24	24	25	2.00
15238762--15240236	709	2.1	715	88	3	2179	26	23	23	26	2.00
15246889--15246941	26	2.0	26	100	0	106	26	26	20	26	1.99
15247127--15247158	12	2.7	12	95	0	55	12	34	18	34	1.89
15247797--15247875	26	3.0	26	96	0	140	26	24	20	29	1.99
15248718--15248770	26	2.0	26	96	0	97	26	24	22	26	2.00
15246821--15250932	921	4.5	884	86	5	5099	25	24	23	25	2.00
15249611--15249663	26	2.0	26	100	0	106	26	26	20	26	1.99
15250508--15250560	26	2.0	26	92	0	88	26	26	20	26	1.99
15251239--15251289	26	2.0	26	96	0	93	29	25	17	27	1.98
15252130--15252182	26	2.0	26	100	0	106	26	22	24	26	2.00
15250952--15253696	888	3.1	885	84	4	3632	25	24	23	26	2.00
15256962--15257014	26	2.0	26	92	0	88	28	24	18	28	1.98
15256856--15259332	892	2.8	879	83	6	3081	26	23	23	26	2.00
15261976--15262028	26	2.0	26	96	0	97	28	24	20	26	1.99
15262855--15262929	26	2.9	26	93	0	123	28	25	17	29	1.97
15263390--15263442	26	2.0	26	92	0	88	28	22	20	28	1.99
15264282--15264334	26	2.0	26	100	0	106	26	26	20	26	1.99
15265179--15265229	26	2.0	26	92	0	84	29	19	19	31	1.97
15262931--15268499	898	6.2	893	86	2	7290	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15266975--15267025	26	2.0	26	96	0	93	29	25	15	29	1.96
15269585--15269637	26	2.0	26	92	0	88	30	26	16	26	1.97
15268518--15273882	887	6.1	884	83	6	5860	26	24	23	25	2.00
15271398--15271450	26	2.0	26	92	0	88	26	24	22	26	2.00
15273856--15273929	26	2.8	26	93	0	121	25	27	17	29	1.97
15274782--15274834	26	2.0	26	96	0	97	28	24	20	26	1.99
15275671--15275723	26	2.0	26	89	7	81	32	24	15	28	1.95
15273882--15276495	887	2.9	897	87	4	3735	26	24	23	26	2.00
15277712--15278971	631	2.0	630	98	0	2412	27	26	23	22	2.00
15280442--15280494	26	2.0	26	92	0	88	26	22	22	28	1.99
15279685--15281549	879	2.1	877	86	3	2618	25	24	25	24	2.00
15281328--15281380	26	2.0	26	92	0	88	28	24	18	28	1.98
15282286--15285426	885	3.5	877	86	3	4117	25	24	24	26	2.00
15288932--15288984	26	2.0	26	92	0	88	28	24	20	26	1.99
15289010--15291354	805	3.0	782	86	5	3080	26	24	24	25	2.00
15292314--15292372	26	2.3	26	88	5	86	30	28	16	23	1.97
15292674--15292704	14	2.2	14	94	0	53	16	16	16	51	1.77
15293939--15293991	26	2.0	26	100	0	106	26	26	20	26	1.99
15293196--15295420	743	3.0	731	87	4	3065	26	23	23	26	2.00
15293965--15295422	713	2.0	716	88	1	2187	26	23	23	26	2.00
15296443--15296495	26	2.0	26	92	0	88	28	24	18	28	1.98
15297340--15297392	26	2.0	26	92	0	88	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15298233--15298285	26	2.0	26	92	0	88	28	24	18	28	1.98
15294682--15302317	901	8.5	895	86	3	9670	25	24	23	25	2.00
15299134--15299186	26	2.0	26	96	0	97	28	26	18	26	1.98
15303186--15303238	26	2.0	26	92	0	88	28	24	18	28	1.98
15302491--15307128	975	5.1	891	78	9	4070	26	25	23	25	2.00
15305963--15306015	26	2.0	26	92	0	88	26	22	20	30	1.98
15306873--15306925	26	2.0	26	96	0	97	28	26	18	26	1.98
15307311--15307363	26	2.0	26	100	0	106	26	22	20	30	1.98
15306696--15307563	438	2.0	438	84	1	1132	19	25	30	24	1.98
15309720--15312311	895	2.9	892	85	4	3287	27	25	22	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131