genome.fa.s2.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  80  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14678211--14678263	26	2.0	26	92	0	88	28	18	24	28	1.98
14678445--14678478	8	4.2	8	100	0	68	11	26	61	0	1.30
14682380--14682432	26	2.0	26	88	0	79	30	16	24	28	1.97
14683259--14683311	26	2.0	26	92	0	88	28	22	22	26	1.99
14682500--14685063	879	2.9	864	84	6	3201	25	23	24	26	2.00
14685018--14685070	26	2.0	26	92	7	90	26	16	26	30	1.97
14691342--14691391	26	1.9	26	95	0	91	30	16	26	28	1.96
14688535--14701323	877	14.4	876	84	4	14159	25	24	24	25	2.00
14696651--14696703	26	2.0	26	96	0	97	28	20	24	26	1.99
14699322--14699374	26	2.0	26	88	0	79	26	16	24	32	1.97
14701705--14701756	26	2.0	26	92	0	86	28	17	25	28	1.97
14701730--14703500	873	2.0	866	87	2	2572	25	24	24	25	2.00
14705053--14705105	26	2.0	26	85	0	70	26	16	24	32	1.97
14706851--14706903	26	2.0	26	88	0	79	28	18	22	30	1.98
14707742--14707794	26	2.0	26	96	0	97	28	20	24	26	1.99
14708664--14708716	26	2.0	26	100	0	106	26	20	26	26	1.99
14709565--14709617	26	2.0	26	88	0	79	26	18	24	30	1.98
14703466--14711145	889	8.6	905	83	5	9395	25	23	24	25	2.00
14710930--14711366	220	2.0	220	89	1	669	31	17	18	32	1.94
14711569--14711621	26	2.0	26	96	0	97	28	20	24	26	1.99
14712486--14712538	26	2.0	26	92	7	90	26	18	24	30	1.98
14713377--14713429	26	2.0	26	89	7	81	30	20	20	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14711137--14715177	891	4.5	888	84	5	4710	26	23	24	25	2.00
14714273--14714332	26	2.4	25	78	13	70	30	20	21	28	1.98
14715866--14715918	26	2.0	26	92	0	88	32	18	20	28	1.97
14716606--14716658	26	2.0	26	92	0	88	26	18	26	28	1.98
14715892--14720615	881	5.3	878	84	5	5168	24	23	25	25	2.00
14719257--14719309	26	2.0	26	100	0	106	26	20	26	26	1.99
14720491--14720739	124	2.0	124	92	0	417	24	18	15	40	1.90
14721200--14721252	26	2.0	26	96	0	97	28	20	24	26	1.99
14722815--14722867	26	2.0	26	92	0	88	26	18	24	30	1.98
14722072--14724462	901	2.7	894	87	3	3370	25	23	24	26	2.00
14723889--14726030	697	3.0	702	85	6	2862	25	22	23	27	2.00
14727664--14727716	26	2.0	26	89	7	81	26	16	24	32	1.97
14728554--14728606	26	2.0	26	96	0	97	26	20	24	28	1.99
14726889--14733024	892	6.9	886	82	7	7041	25	23	24	26	2.00
14729458--14729510	26	2.0	26	92	0	88	28	22	24	24	2.00
14730339--14730389	26	2.0	26	96	0	93	29	15	27	27	1.96
14731238--14731290	26	2.0	26	96	0	97	26	18	26	28	1.98
14732100--14732152	26	2.0	26	92	0	88	26	18	24	30	1.98
14733663--14733715	26	2.0	26	100	0	106	26	20	26	26	1.99
14734560--14734638	26	3.0	26	92	0	131	26	20	22	30	1.98
14737183--14737236	26	2.1	26	92	0	90	31	18	22	27	1.97
14736610--14739130	902	2.8	885	86	3	3361	25	23	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14739692--14742294	895	2.9	886	86	2	3520	26	23	23	26	2.00
14742159--14742210	26	2.0	26	88	0	77	28	13	26	30	1.94
14742925--14742977	26	2.0	26	92	0	88	28	18	24	28	1.98
14741537--14743051	767	2.0	766	86	3	2144	25	22	23	27	2.00
14743824--14743876	26	2.0	26	100	0	106	26	24	22	26	2.00
14744715--14744765	26	2.0	26	100	0	102	27	15	25	31	1.96
14742314--14748371	886	6.7	894	85	4	7496	26	23	23	26	2.00
14746503--14746555	26	2.0	26	96	0	97	26	22	24	26	2.00
14747399--14747477	26	3.0	26	88	0	122	30	16	25	27	1.97
14748227--14748257	13	2.4	13	100	0	62	12	29	16	41	1.85
14748919--14748971	26	2.0	26	92	0	88	28	18	24	28	1.98
14749169--14749218	26	1.9	26	91	0	82	30	22	26	22	1.99
14750063--14750114	26	2.0	26	88	3	79	26	21	25	26	1.99
14750958--14751036	26	3.0	26	94	0	140	29	20	24	26	1.99
14751872--14751924	26	2.0	26	100	0	106	26	20	26	26	1.99
14752409--14752461	26	2.0	26	88	0	79	28	16	24	30	1.97
14753290--14753342	26	2.0	26	100	0	106	26	20	26	26	1.99
14753316--14753692	159	2.4	158	89	1	540	23	30	27	17	1.97
14755011--14755063	26	2.0	26	92	0	88	28	20	22	28	1.99
14755911--14758177	881	2.6	861	88	3	3247	25	22	24	26	2.00
14760876--14760928	26	2.0	26	96	0	97	28	20	24	26	1.99
14758330--14762209	906	4.3	896	84	4	4806	25	23	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14762631--14762685	26	2.1	26	93	0	92	25	21	25	27	2.00
14763531--14763582	26	2.0	26	88	0	77	26	17	26	28	1.97
14764412--14764464	26	2.0	26	92	0	88	26	18	26	28	1.98
14766190--14766242	26	2.0	26	88	0	79	30	18	22	28	1.98
14767072--14767124	26	2.0	26	92	7	90	28	24	22	24	2.00
14762206--14769789	881	8.5	887	83	6	8917	25	24	24	25	2.00
14768855--14768906	25	2.0	26	88	3	79	28	19	23	28	1.98
14770484--14770536	26	2.0	26	88	0	79	24	16	30	28	1.97
14769746--14771913	899	2.4	897	87	2	3067	24	23	25	27	2.00
14772614--14772666	26	2.0	26	92	0	88	28	18	26	26	1.98
14773502--14773554	26	2.0	26	88	0	79	30	22	20	26	1.98
14772207--14775327	902	3.5	897	86	3	4209	25	24	24	25	2.00
14776010--14776062	26	2.0	26	100	0	106	26	20	26	26	1.99
14776912--14776963	26	2.0	26	92	0	86	26	19	25	28	1.98
14777642--14777694	26	2.0	26	96	0	97	26	20	24	28	1.99
14776282--14777767	731	2.0	732	88	1	2221	25	22	23	27	2.00
14777872--14777908	12	3.1	12	96	0	65	10	27	62	0	1.28
14778372--14778422	26	2.0	26	96	0	93	27	13	27	31	1.94
14777592--14779025	716	2.0	720	86	3	2019	25	22	24	27	2.00
14779279--14779331	26	2.0	26	88	0	79	26	16	24	32	1.97
14780176--14780228	26	2.0	26	85	7	72	28	18	22	30	1.98
14780962--14781014	26	2.0	26	92	0	88	28	18	26	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14782744--14782795	26	2.0	26	96	0	95	26	17	26	28	1.97
14783627--14783677	26	2.0	26	88	0	75	31	13	25	29	1.94
14785396--14785446	26	2.0	26	92	0	84	27	17	29	25	1.98
14780319--14791119	869	12.3	872	83	6	11777	25	23	24	25	2.00
14790635--14790687	26	2.0	26	88	0	79	26	24	22	26	2.00
14791390--14791441	26	2.0	26	88	3	79	28	17	26	26	1.97
14792286--14792338	26	2.0	26	92	0	88	26	16	28	28	1.97
14791573--14793057	745	2.0	738	88	2	2172	26	23	23	26	2.00
14793909--14793961	26	2.0	26	88	0	79	24	20	26	28	1.99
14792372--14794826	878	2.8	888	87	4	3517	24	24	24	26	2.00
14795497--14795549	26	2.0	26	92	0	88	26	16	26	30	1.97
14797100--14797152	26	2.0	26	96	0	97	26	22	24	26	2.00
14798004--14798056	26	2.0	26	96	0	97	24	22	26	26	2.00
14796377--14798263	904	2.1	906	88	1	2795	25	25	25	24	2.00
14798274--14798332	31	1.9	31	96	0	109	35	8	22	33	1.84
14801165--14801217	26	2.0	26	92	0	88	28	18	26	26	1.98
14802939--14802990	26	2.0	26	100	0	104	26	19	26	26	1.99
14798628--14807353	904	9.8	892	83	5	10375	25	24	25	25	2.00
14807304--14810788	868	4.0	871	84	5	4203	25	23	24	25	2.00
14809794--14809846	26	2.0	26	96	0	97	26	18	26	28	1.98
14808924--14810715	884	2.0	880	85	4	2347	25	23	25	25	2.00
14812266--14812318	26	2.0	26	92	0	88	28	20	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14813157--14813209	26	2.0	26	100	0	106	26	20	26	26	1.99
14810660--14814988	883	4.9	884	83	6	5168	25	23	24	25	2.00
14815661--14815713	26	2.0	26	96	0	97	26	20	24	28	1.99
14816561--14816613	26	2.0	26	88	0	79	30	20	20	28	1.98
14814942--14820093	901	5.8	897	84	5	6387	26	23	24	25	2.00
14817460--14817512	26	2.0	26	100	0	106	26	20	26	26	1.99
14818361--14818413	26	2.0	26	96	0	97	26	18	26	28	1.98
14820309--14820365	26	2.2	26	81	6	62	21	7	10	61	1.52
14820777--14820829	26	2.0	26	92	0	88	28	18	24	28	1.98
14824805--14824857	26	2.0	26	100	0	106	26	20	26	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131