genome.fa.s2.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  115  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20609946--20609984	2	19.5	2	89	0	60	48	2	2	46	1.29
20612032--20612074	2	21.5	2	100	0	86	48	0	0	51	1.00
20614135--20614171	15	2.4	16	82	13	51	64	0	0	35	0.94
20616591--20616756	90	1.8	90	83	2	217	40	7	10	40	1.69
20616677--20617231	131	4.2	131	88	2	720	47	9	6	35	1.63
20636153--20636206	21	2.5	22	87	6	74	46	0	1	51	1.11
20638758--20638826	28	2.5	28	75	11	72	30	5	4	59	1.40
20652864--20652929	23	2.8	24	81	9	73	72	0	22	4	1.02
20652857--20652912	12	4.8	12	75	4	51	73	0	23	3	0.99
20652864--20652912	24	2.1	23	85	11	64	73	0	22	4	1.00
20652848--20652929	23	3.6	23	77	11	71	74	0	21	3	0.97
20653764--20653808	21	2.1	21	84	8	56	20	11	2	66	1.33
20654737--20654768	2	16.0	2	93	0	55	53	0	0	46	1.00
20655349--20655409	30	2.0	30	93	0	104	40	9	8	40	1.68
20656590--20656662	31	2.3	31	85	2	92	46	5	5	42	1.50
20656609--20656678	31	2.3	31	82	0	86	55	2	2	38	1.29
20657494--20657522	7	4.3	7	91	8	51	31	0	13	55	1.39
20660966--20661141	89	2.0	89	91	0	289	17	9	23	48	1.77
20662897--20662955	28	2.1	29	87	3	84	52	0	1	45	1.10
20663039--20663107	29	2.5	28	83	9	79	50	1	2	44	1.25
20664681--20664744	29	2.2	29	85	0	83	53	10	7	28	1.64
20664732--20665327	295	2.0	296	99	0	1185	51	6	3	38	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20666268--20666574	133	2.3	133	83	3	368	28	13	19	38	1.89
20667929--20667973	19	2.4	19	92	3	74	40	13	15	31	1.86
20674845--20676033	651	1.8	642	82	4	1399	37	12	11	38	1.80
20676631--20676880	80	3.2	79	81	2	286	25	7	23	44	1.79
20676864--20676918	25	2.2	24	81	9	65	18	3	34	43	1.67
20684610--20684714	52	2.0	52	83	7	133	26	20	9	43	1.82
20684742--20684788	11	4.4	11	84	12	62	53	31	0	14	1.42
20684997--20685090	25	3.9	24	83	8	93	20	37	7	35	1.81
20685019--20685090	25	2.9	26	87	8	105	18	38	9	33	1.83
20690129--20690204	31	2.5	31	86	0	107	55	18	6	19	1.64
20691076--20691148	27	2.8	26	89	6	103	36	15	4	43	1.65
20691103--20691151	16	3.4	16	68	26	54	36	14	2	46	1.56
20691272--20691304	15	2.1	16	88	11	50	36	0	0	63	0.95
20691281--20691342	27	2.3	26	77	5	61	38	6	1	53	1.37
20698397--20698423	12	2.2	12	100	0	54	70	0	7	22	1.12
20698672--20698715	21	2.1	21	95	0	79	40	0	13	45	1.44
20698936--20698970	12	2.9	12	82	0	52	28	0	2	68	1.04
20699457--20699503	10	4.5	10	81	10	51	40	0	4	55	1.19
20699631--20699661	13	2.4	13	94	0	53	54	3	0	41	1.16
20702591--20702695	52	2.0	52	87	3	149	25	22	9	41	1.84
20702728--20702761	11	3.1	11	91	0	59	50	29	0	20	1.49
20702720--20702762	22	2.0	22	90	9	70	51	27	0	20	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20703588--20703692	52	2.0	52	87	3	149	24	23	9	41	1.84
20703717--20703757	11	3.8	11	87	3	57	51	29	0	19	1.47
20703717--20703758	22	2.0	22	90	4	68	50	28	0	21	1.49
20708662--20708703	21	2.0	21	86	9	59	45	7	0	47	1.30
20708641--20708714	29	2.5	29	78	14	80	45	5	0	48	1.25
20708922--20709309	201	1.9	200	86	4	550	46	7	14	31	1.72
20712845--20712875	2	15.5	2	100	0	62	51	0	0	48	1.00
20712943--20712994	22	2.4	22	93	3	88	61	3	3	30	1.32
20713465--20713569	42	2.5	43	78	10	117	46	2	1	48	1.27
20713724--20713809	43	2.0	42	82	10	104	47	2	2	47	1.27
20713988--20714021	16	2.1	16	88	0	50	47	2	2	47	1.32
20723923--20724000	40	2.0	40	87	5	113	46	1	3	48	1.28
20728768--20728813	24	1.9	24	86	8	67	32	4	0	63	1.14
20730865--20730895	2	15.5	2	100	0	62	48	0	0	51	1.00
20732197--20732237	2	21.5	2	90	9	68	46	0	0	53	1.00
20732894--20732942	21	2.4	21	79	3	55	32	0	2	65	1.04
20735128--20735161	2	17.0	2	100	0	68	50	0	50	0	1.00
20735665--20735707	20	2.1	21	91	4	70	2	20	0	76	0.89
20736889--20736935	3	15.7	3	95	0	85	29	0	2	68	1.02
20738501--20738534	17	2.0	17	88	0	50	5	11	11	70	1.32
20738651--20738717	33	2.0	33	82	0	80	38	13	14	32	1.86
20742161--20742194	15	2.2	16	89	5	52	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20742358--20742395	18	2.3	18	86	13	55	42	0	0	57	0.98
20748155--20748212	15	3.6	15	76	15	53	75	3	8	12	1.14
20748528--20748846	167	2.0	156	83	10	392	47	10	7	33	1.66
20749081--20749117	19	2.0	19	89	5	58	67	0	2	29	1.04
20749081--20749127	10	4.6	11	78	21	50	65	0	2	31	1.04
20749064--20749128	20	3.4	19	74	14	55	60	1	1	36	1.16
20755903--20755950	23	2.1	23	96	0	87	27	45	10	16	1.80
20757298--20757357	17	3.6	16	82	12	77	66	0	1	31	1.01
20757298--20757357	3	21.7	3	77	19	60	66	0	1	31	1.01
20757310--20757357	8	5.8	8	88	9	69	64	0	2	33	1.05
20757492--20757541	14	3.5	15	86	5	68	48	36	0	16	1.46
20757487--20757548	15	4.2	14	79	8	61	51	32	0	16	1.44
20757598--20757655	29	2.0	29	80	12	66	48	29	1	20	1.60
20757486--20757688	105	2.0	103	80	7	232	49	28	1	20	1.58
20763821--20763859	13	3.0	13	81	11	53	76	5	5	12	1.11
20763821--20763872	26	2.0	26	88	0	77	80	3	5	9	0.99
20764439--20764487	12	3.8	12	85	15	71	87	8	2	2	0.69
20764444--20764481	15	2.6	14	88	8	58	89	5	2	2	0.64
20764439--20764505	18	3.8	18	78	7	66	85	7	4	2	0.83
20766286--20766483	105	1.9	106	82	3	256	33	14	15	36	1.88
20766730--20766894	88	1.9	88	87	2	242	21	20	15	42	1.89
20766576--20767011	220	2.0	219	84	1	568	23	19	16	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20767075--20767146	37	1.9	37	94	0	126	12	20	19	47	1.82
20766797--20767136	131	2.6	131	83	5	409	21	19	17	41	1.90
20767428--20767473	23	2.0	24	91	4	76	78	2	4	15	1.01
20768889--20768953	3	22.0	3	79	14	73	63	0	1	35	1.04
20769096--20769164	22	3.1	22	72	12	61	53	31	0	14	1.41
20769202--20769297	22	4.1	23	70	23	76	53	25	4	17	1.62
20769216--20769297	7	11.6	7	67	12	51	53	25	3	17	1.60
20769256--20769297	14	2.9	15	89	6	61	57	23	0	19	1.41
20770047--20770075	15	1.9	15	100	0	58	48	0	6	44	1.29
20770468--20770505	18	2.1	19	85	5	51	63	7	5	23	1.42
20772890--20772966	29	2.9	25	73	21	68	46	0	5	48	1.24
20773114--20773161	20	2.2	22	78	14	55	39	6	8	45	1.59
20774052--20774089	19	2.0	20	85	10	53	42	5	0	52	1.24
20774044--20774103	28	2.2	26	82	11	68	40	5	1	53	1.33
20775514--20775565	17	2.9	17	85	5	59	44	0	3	51	1.19
20775526--20775571	17	2.6	17	86	3	56	47	0	4	47	1.21
20778460--20778485	13	2.0	13	100	0	52	46	15	7	30	1.74
20780366--20780410	18	2.4	20	78	17	60	40	4	0	55	1.20
20782240--20782288	21	2.4	21	75	21	50	65	2	0	32	1.04
20784439--20784472	2	17.0	2	93	0	59	50	2	0	47	1.16
20785037--20785067	2	15.5	2	100	0	62	51	0	0	48	1.00
20788573--20788598	6	4.3	6	100	0	52	0	53	15	30	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20792567--20792618	16	3.7	14	78	19	54	38	0	3	57	1.17
20794698--20794734	2	18.5	2	94	0	65	48	0	0	51	1.00
20797253--20797509	128	2.0	128	90	3	403	51	1	19	27	1.55
20797463--20797515	12	4.3	12	78	4	52	62	0	3	33	1.13
20807551--20808343	239	3.3	234	80	5	817	35	11	11	40	1.78
20809137--20809260	28	4.6	28	80	8	132	23	3	25	47	1.66
20812576--20812882	125	2.5	124	80	5	307	35	14	14	35	1.86
20812660--20812817	63	2.5	61	75	8	156	34	16	13	36	1.88
20812814--20813270	241	1.9	239	86	1	655	34	14	12	37	1.85
20813118--20813348	126	1.8	126	84	7	317	35	17	11	35	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131