genome.fa.s2.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  25  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6016579--6016637	1	59.0	1	79	0	64	89	10	0	0	0.47
6019272--6019310	17	2.6	14	84	15	51	82	0	17	0	0.68
6021240--6021291	24	2.2	24	96	0	95	38	11	5	44	1.65
6035926--6036005	37	2.2	37	83	0	106	40	0	7	52	1.30
6036344--6036380	10	4.0	10	83	16	53	59	0	0	40	0.97
6037543--6037593	19	2.5	20	78	9	50	41	5	5	47	1.52
6038114--6038151	20	1.9	20	88	0	58	44	26	0	28	1.54
6040065--6040375	70	4.4	70	79	8	310	37	5	3	53	1.41
6040078--6040377	139	2.1	140	81	6	349	38	5	3	52	1.42
6044270--6044315	2	23.0	2	86	0	65	47	0	2	50	1.13
6047005--6047115	42	2.6	41	73	5	105	37	10	9	42	1.72
6048010--6048066	25	2.2	26	87	3	89	17	12	0	70	1.17
6048286--6048315	15	2.0	15	100	0	60	13	6	26	53	1.64
6048364--6048393	15	2.0	15	93	0	51	70	0	0	30	0.88
6049280--6049523	22	11.1	22	71	11	108	38	7	9	43	1.66
6049322--6049426	44	2.4	44	81	0	120	39	7	7	45	1.61
6049529--6049621	22	4.2	22	77	2	80	38	8	4	48	1.54
6049732--6049851	22	5.5	21	69	9	80	35	9	5	50	1.56
6049746--6049851	43	2.4	44	79	4	117	34	9	5	50	1.59
6049743--6049892	43	3.4	42	73	15	108	34	9	6	50	1.59
6050265--6050539	22	12.2	22	68	15	89	40	8	6	45	1.59
6050440--6050722	22	13.0	22	67	12	84	36	8	3	51	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6050611--6050723	42	2.6	43	78	4	120	36	7	5	51	1.52
6051153--6051186	13	2.6	13	85	0	50	17	2	0	79	0.86
6055750--6055797	15	3.2	15	80	14	55	66	0	20	12	1.24
6055797--6055852	9	6.8	9	75	19	59	78	0	3	17	0.89
6055797--6055852	17	3.4	17	83	14	73	78	0	3	17	0.89
6055797--6055841	15	2.9	15	86	6	63	80	0	0	20	0.72
6055800--6055849	23	2.2	23	88	0	73	76	0	4	20	0.95
6056982--6057058	21	3.5	21	76	13	82	35	7	18	38	1.79
6057098--6057180	20	3.7	23	80	7	84	38	10	13	37	1.79
6057081--6057180	20	4.6	21	75	13	78	38	12	14	36	1.83
6057493--6057546	19	2.8	19	94	0	90	27	11	25	35	1.90
6057645--6057867	41	5.4	41	85	0	248	24	13	18	43	1.85
6057639--6057867	42	5.5	42	84	2	212	24	13	19	43	1.87
6058603--6058656	26	2.1	26	83	13	67	40	3	11	44	1.58
6058726--6058763	19	2.0	20	89	5	60	84	5	0	10	0.77
6059863--6059974	44	2.5	44	80	11	131	41	9	3	44	1.55
6059812--6059974	22	7.6	22	73	10	88	39	9	4	46	1.55
6061974--6062035	27	2.3	27	83	8	74	48	1	1	48	1.21
6062162--6062201	21	1.9	21	89	0	62	37	10	7	45	1.66
6063190--6063238	17	2.9	17	79	8	55	38	4	2	55	1.31
6063206--6063245	17	2.4	17	79	4	55	50	2	0	47	1.14
6064665--6064790	63	2.0	64	87	1	182	45	5	3	45	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6073279--6073324	18	2.6	18	85	0	65	28	6	26	39	1.81
6076667--6076725	29	2.0	29	83	6	75	67	5	1	25	1.20
6076873--6076905	16	2.1	16	94	0	57	57	0	3	39	1.14
6081770--6081809	18	2.2	19	86	4	55	7	2	17	72	1.19
6086282--6086329	23	2.1	23	88	7	71	50	4	8	37	1.52
6090241--6090334	46	2.0	46	93	0	161	23	22	13	40	1.90
6090693--6090790	49	2.0	49	97	0	187	20	21	22	35	1.96
6093489--6093910	218	1.9	220	85	5	575	38	13	5	41	1.67
6098257--6098543	145	2.0	145	97	0	538	23	33	17	26	1.96
6098522--6098640	57	2.1	57	88	1	186	16	29	28	25	1.97
6100249--6100328	40	2.0	40	97	0	151	46	15	13	25	1.82
6101919--6101962	22	2.0	22	95	0	79	43	11	13	31	1.80
6105604--6105698	25	3.8	25	90	0	145	41	17	22	18	1.91
6107625--6107650	4	6.5	4	100	0	52	46	0	0	53	1.00
6108919--6108971	15	3.4	16	73	17	58	49	5	0	45	1.26
6109618--6109678	12	4.8	12	79	16	70	32	0	0	67	0.91
6109616--6109680	22	3.0	22	77	6	69	33	0	0	66	0.92
6111329--6111370	14	3.1	14	75	3	50	52	0	0	47	1.00
6111628--6111672	23	2.0	23	82	8	56	15	11	40	33	1.83
6119557--6119586	2	15.5	2	93	6	53	53	0	0	46	1.00
6129038--6129075	2	19.0	2	100	0	76	50	0	0	50	1.00
6136837--6136865	7	4.1	7	100	0	58	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6142030--6142108	39	2.0	39	100	0	158	44	20	17	17	1.87
6143239--6143288	24	2.1	24	88	3	75	48	2	0	50	1.12
6146132--6146172	20	2.0	20	100	0	82	9	34	0	56	1.32
6167037--6167066	10	3.0	10	100	0	60	50	0	0	50	1.00
6169298--6169412	48	2.4	47	77	12	119	31	4	11	53	1.56
6169315--6169373	27	2.2	27	85	8	84	30	5	10	54	1.56
6170667--6170734	20	3.3	20	80	12	68	72	4	4	19	1.19
6170708--6170776	28	2.3	30	76	16	81	73	7	2	15	1.17
6176037--6176128	45	2.0	45	100	0	184	47	4	19	28	1.68
6182329--6182372	22	2.0	22	90	0	70	31	11	11	45	1.76
6182514--6182607	23	4.0	24	89	6	124	14	23	17	44	1.85
6182514--6182604	48	2.0	45	87	10	130	14	21	17	46	1.84
6186251--6186294	22	2.0	22	95	0	79	31	11	13	43	1.80
6192876--6192934	31	1.9	31	89	0	91	35	3	6	54	1.44
6194483--6194543	29	2.3	27	83	13	74	37	1	1	59	1.17
6194873--6194904	16	1.9	17	93	6	57	37	0	12	50	1.41
6194770--6195009	122	2.0	121	80	8	272	38	4	15	41	1.67
6195115--6195427	129	2.4	129	84	2	389	42	4	9	42	1.58
6195801--6195938	60	2.3	62	81	9	169	40	2	14	42	1.58
6196957--6197000	18	2.4	18	77	7	54	56	4	0	38	1.20
6199630--6199656	2	13.5	2	100	0	54	0	48	0	51	1.00
6207136--6207168	3	11.0	3	100	0	66	0	33	33	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6207207--6207231	6	4.2	6	100	0	50	0	20	32	48	1.50
6209195--6209251	22	2.4	24	82	14	73	43	0	0	56	0.99
6209204--6209243	14	2.7	15	84	3	55	42	0	0	57	0.98
6210081--6210146	22	3.0	21	77	12	62	50	1	0	48	1.10
6213369--6213460	46	2.0	46	87	8	134	50	7	10	31	1.66
6234162--6234226	25	2.6	25	72	9	71	50	1	1	46	1.20
6234462--6234520	28	2.1	28	93	0	100	30	27	0	42	1.56
6238460--6238617	79	2.0	79	98	0	307	22	20	16	39	1.92
6244080--6244146	7	9.1	7	73	14	55	16	4	2	76	1.08
6244113--6244147	15	2.4	14	86	13	52	14	5	0	80	0.89
6244201--6244263	18	3.4	18	78	18	67	77	4	1	15	1.01
6244240--6244283	5	8.8	5	83	16	56	79	0	2	18	0.83
6244230--6244268	16	2.3	17	91	8	62	76	0	2	20	0.90
6244212--6244282	13	5.2	13	74	12	63	78	1	2	16	0.94
6244240--6244283	11	3.9	11	83	13	54	79	0	2	18	0.83
6244212--6244276	21	3.2	19	75	14	58	80	1	1	16	0.88
6244491--6244587	51	1.9	51	87	4	142	51	14	8	25	1.70
6245080--6245131	5	10.2	5	87	4	68	67	0	0	32	0.91
6245071--6245131	31	2.0	31	90	0	95	70	0	0	29	0.88
6245058--6245131	10	7.6	10	79	10	64	72	0	0	27	0.84
6245060--6245134	39	2.0	37	84	10	98	72	0	0	28	0.86
6245058--6245134	21	3.9	21	77	11	74	72	0	0	27	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6245322--6245648	121	2.7	120	78	6	336	43	11	24	21	1.85
6245356--6245940	120	4.9	119	77	8	472	43	11	23	21	1.86
6246662--6246695	11	3.0	11	95	4	59	2	8	0	88	0.62
6246662--6246695	12	2.9	12	91	4	52	2	8	0	88	0.62
6246719--6246777	17	3.3	17	78	7	55	6	22	1	69	1.21
6246719--6246756	18	2.1	19	90	5	60	5	15	0	78	0.91
6251101--6251322	104	2.1	104	93	0	372	32	9	16	42	1.79
6251483--6251543	16	3.7	16	74	8	59	13	3	4	78	1.03
6251583--6251634	21	2.7	20	88	8	72	75	3	1	19	1.06
6251598--6251669	13	5.3	13	69	14	56	75	2	2	19	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131