genome.fa.s2.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  43  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9107169--9107194	3	8.7	3	100	0	52	34	30	0	34	1.58
9107323--9107530	105	2.0	108	84	4	280	36	5	10	47	1.62
9108312--9108352	22	1.9	21	85	5	55	14	9	2	73	1.19
9109128--9109189	9	6.2	9	76	20	52	24	1	3	70	1.10
9109340--9109561	49	4.3	49	72	15	169	37	9	8	44	1.67
9109380--9109621	111	2.2	109	86	1	331	36	11	9	43	1.72
9111171--9111229	3	19.7	3	100	0	118	32	0	0	67	0.91
9111352--9111538	49	3.6	49	72	17	153	39	8	10	41	1.69
9113049--9113112	3	21.3	3	96	0	119	65	0	1	32	1.02
9113812--9114079	134	2.0	134	88	1	394	37	15	5	40	1.72
9118804--9118842	18	2.2	18	100	0	78	20	10	15	53	1.70
9123350--9123379	3	10.0	3	100	0	60	66	33	0	0	0.92
9123925--9124061	71	1.9	72	86	4	197	22	10	18	48	1.77
9125549--9125719	3	59.3	3	77	12	144	31	4	4	59	1.37
9126456--9126507	16	3.2	16	80	2	59	15	5	1	76	1.05
9137634--9137713	42	1.9	42	86	0	115	35	13	18	32	1.90
9137646--9138002	42	8.5	40	70	13	137	35	14	14	36	1.86
9137735--9137820	40	2.1	40	80	10	93	31	16	12	39	1.86
9137463--9138124	213	3.1	209	84	4	830	36	14	13	36	1.85
9140934--9141053	37	3.2	37	89	2	179	36	24	15	24	1.93
9141059--9141094	18	2.0	18	94	0	63	13	11	0	75	1.06
9141111--9141154	3	14.7	3	95	0	79	63	0	2	34	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9143339--9143475	62	2.2	60	77	10	143	39	16	12	32	1.85
9143506--9143553	24	1.9	25	83	8	62	54	4	4	37	1.39
9144782--9144972	100	1.9	100	82	4	240	44	10	11	33	1.75
9144804--9145062	51	5.1	51	75	11	212	42	11	11	33	1.79
9144804--9145062	102	2.6	100	77	9	258	42	11	11	33	1.79
9145510--9145552	18	2.3	20	80	15	56	20	30	0	48	1.50
9145904--9145981	31	2.5	31	87	2	102	28	20	19	32	1.97
9145904--9146055	32	4.8	31	77	6	128	26	18	19	35	1.95
9146009--9146091	31	2.7	31	74	10	80	26	18	15	39	1.90
9145924--9146117	62	3.1	62	75	10	164	25	18	19	37	1.93
9146621--9146660	19	2.1	19	85	0	53	2	25	2	70	1.13
9146630--9146666	19	2.0	19	89	5	58	0	21	2	75	0.92
9149807--9149850	9	4.7	9	83	10	61	0	15	0	84	0.63
9149807--9149852	5	9.6	5	86	9	69	0	17	0	82	0.67
9149809--9149872	29	2.2	29	88	5	94	3	14	0	82	0.78
9149823--9149864	20	2.1	20	86	0	57	2	16	0	80	0.81
9154945--9154993	21	2.5	21	81	18	61	20	10	0	69	1.17
9156513--9156647	7	19.6	7	72	23	92	25	2	27	45	1.65
9156513--9156647	33	4.1	31	76	16	91	25	2	27	45	1.65
9156534--9156631	19	5.1	18	81	12	99	23	3	28	44	1.68
9156513--9156624	13	8.4	13	75	16	97	25	1	27	44	1.64
9156636--9156682	21	2.2	21	81	7	51	19	4	31	44	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9164289--9164332	21	2.2	20	87	4	61	43	4	4	47	1.44
9171818--9171880	32	2.0	32	93	0	108	52	20	12	14	1.74
9179748--9179773	2	13.0	2	100	0	52	50	0	0	50	1.00
9184560--9184612	17	3.1	17	75	5	54	54	5	13	26	1.60
9186503--9186565	32	2.0	32	84	6	83	38	14	7	39	1.75
9187261--9187324	27	2.3	27	81	2	74	35	4	6	53	1.47
9187278--9187330	27	2.0	27	84	0	70	30	3	5	60	1.37
9187343--9187411	17	4.1	17	70	7	52	28	5	1	63	1.26
9187458--9187501	20	2.1	21	87	4	63	25	2	2	70	1.10
9187439--9187501	29	2.2	29	85	0	81	25	3	3	68	1.19
9187457--9187502	19	2.3	20	81	3	58	28	2	2	67	1.14
9187682--9187753	28	2.6	28	85	10	87	58	5	1	34	1.30
9193485--9193532	17	3.1	16	82	8	55	85	0	12	2	0.69
9193485--9193532	22	2.2	23	88	7	73	85	0	12	2	0.69
9196595--9196690	38	2.6	36	80	6	104	36	22	11	29	1.89
9201761--9202005	130	1.9	130	88	3	368	48	9	18	22	1.77
9203700--9203733	16	2.0	17	88	11	52	70	0	17	11	1.16
9203821--9203896	33	2.3	33	86	0	98	32	19	15	31	1.94
9204602--9204690	33	2.7	33	79	11	101	76	11	1	11	1.08
9204609--9204671	9	7.2	9	78	8	60	74	11	1	12	1.14
9204658--9204691	14	2.4	15	90	9	54	79	11	0	8	0.94
9204620--9204683	14	4.1	14	78	11	56	76	12	0	10	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9204626--9204689	24	2.6	25	83	13	73	78	9	0	12	0.97
9205038--9205085	17	2.6	19	78	21	57	16	2	4	77	1.03
9205044--9205086	18	2.5	17	88	3	68	13	2	4	79	1.00
9206805--9206834	13	2.3	13	94	0	51	20	26	0	53	1.46
9206848--9206951	52	2.0	52	84	3	138	30	14	7	47	1.72
9208951--9208989	3	13.0	3	94	0	69	69	0	0	30	0.89
9211566--9211605	14	2.9	13	82	10	53	70	7	2	20	1.24
9220582--9220626	22	2.2	21	88	11	67	46	0	2	51	1.13
9220650--9220720	31	2.5	26	82	11	79	40	2	2	53	1.30
9221864--9221908	22	2.0	23	82	8	56	55	0	4	40	1.20
9221902--9221953	21	2.3	23	87	9	72	59	0	1	38	1.08
9223862--9223896	18	1.9	18	88	11	54	14	2	2	80	0.95
9227525--9227562	16	2.5	15	87	8	58	50	0	2	47	1.15
9228147--9228280	62	2.2	62	89	4	209	36	2	18	41	1.66
9228098--9229269	396	3.0	392	80	9	1310	38	4	17	39	1.69
9229369--9229449	25	3.2	26	77	6	78	40	4	17	37	1.71
9230835--9231013	75	2.4	75	85	6	231	32	24	19	22	1.97
9235907--9235939	16	2.1	16	94	0	57	39	12	0	48	1.40
9239906--9239935	2	15.0	2	100	0	60	50	0	0	50	1.00
9241458--9241493	19	1.9	18	88	5	54	50	0	0	50	1.00
9242712--9243261	143	3.8	144	80	5	603	34	11	13	41	1.79
9242712--9243261	286	1.9	286	83	3	712	34	11	13	41	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9247287--9247315	14	2.0	15	93	6	51	20	3	0	75	0.94
9247347--9247393	22	2.2	20	85	7	58	76	0	14	8	1.01
9248021--9248047	2	13.5	2	100	0	54	48	0	0	51	1.00
9249914--9249952	11	3.5	11	78	0	51	35	15	7	41	1.76
9249837--9250176	44	7.6	41	72	16	139	36	9	7	46	1.65
9249802--9250020	22	10.0	23	73	9	142	37	9	9	43	1.69
9249932--9250117	96	1.9	96	82	6	234	39	8	6	44	1.62
9250024--9250112	22	4.0	22	76	12	85	40	8	5	44	1.59
9250030--9250221	22	8.7	22	72	10	72	38	8	5	47	1.57
9249910--9250126	118	1.8	118	80	11	257	38	9	7	44	1.64
9249866--9250169	162	1.9	162	81	10	372	37	8	7	46	1.64
9250445--9250496	22	2.4	22	86	0	68	42	9	3	44	1.55
9250780--9250926	22	6.7	22	78	3	118	38	8	9	43	1.67
9250780--9250926	44	3.4	44	77	3	136	38	8	9	43	1.67
9250870--9250970	43	2.3	44	80	10	109	34	4	13	46	1.65
9250780--9250970	22	8.8	22	77	5	113	37	7	10	45	1.67
9251073--9251144	22	3.3	22	70	16	60	31	8	5	54	1.54
9251906--9252197	148	2.0	149	80	2	336	34	10	10	44	1.73
9252998--9253203	79	2.7	75	82	9	244	36	7	6	49	1.58
9254593--9254688	34	2.8	34	80	4	113	36	9	21	32	1.86
9254593--9254779	17	10.6	17	64	13	56	37	9	21	31	1.86
9254875--9254951	23	3.5	22	72	11	61	35	11	9	44	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9254857--9254991	43	3.1	44	80	8	134	37	14	11	37	1.81
9256475--9256540	12	4.3	15	69	28	50	12	6	7	74	1.22
9256506--9256540	18	1.9	18	100	0	70	11	8	5	74	1.22
9261258--9261331	10	7.2	10	74	6	67	79	0	13	6	0.91
9261260--9261317	20	2.7	22	81	10	84	81	0	12	6	0.88
9261246--9261330	30	2.8	29	83	11	100	78	0	14	7	0.94
9261246--9261332	20	4.3	20	76	13	72	78	0	13	8	0.96
9262742--9262861	44	2.7	43	76	11	116	33	12	20	33	1.90
9263122--9263435	42	7.4	42	86	3	416	24	15	13	46	1.82
9263122--9263435	85	3.7	85	88	1	452	24	15	13	46	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131