genome.fa.s2.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  22  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5302018--5302047	11	2.6	11	94	5	51	60	0	0	40	0.97
5306270--5306334	28	2.3	29	82	7	82	44	0	3	52	1.16
5310435--5310639	63	3.2	63	71	11	166	39	12	12	35	1.82
5317673--5317797	62	2.0	62	96	0	232	33	14	24	27	1.94
5323834--5323866	12	2.6	13	90	4	50	30	24	0	45	1.53
5323892--5323923	15	2.1	15	94	0	55	59	12	3	25	1.48
5325367--5325447	31	2.6	31	80	3	92	54	2	2	40	1.27
5325963--5326014	21	2.5	21	90	6	79	50	0	0	50	1.00
5325963--5326014	22	2.5	22	93	6	90	50	0	0	50	1.00
5328426--5328489	29	2.3	26	84	12	76	46	1	0	51	1.10
5329756--5329791	18	2.0	18	94	0	63	33	16	8	41	1.78
5330958--5331242	142	2.0	142	98	0	552	36	20	16	27	1.93
5343512--5343546	18	1.9	18	88	11	54	8	11	8	71	1.31
5348038--5348079	22	1.9	22	90	0	66	33	11	9	45	1.73
5351991--5352032	22	1.9	22	90	0	66	33	11	9	45	1.73
5358302--5358384	41	2.0	41	100	0	166	26	16	13	43	1.85
5358318--5358384	19	3.1	23	65	34	58	25	16	13	44	1.84
5359901--5359926	2	13.0	2	100	0	52	50	0	0	50	1.00
5362362--5362400	2	19.5	2	89	0	60	43	0	5	51	1.24
5364028--5364084	21	2.8	21	72	2	53	50	5	0	43	1.24
5364753--5364777	10	2.5	10	100	0	50	8	0	0	92	0.40
5364768--5364810	17	2.6	16	81	3	50	18	6	13	60	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5367433--5367471	18	2.1	19	90	4	62	53	0	2	43	1.14
5367594--5367635	22	1.9	22	90	0	66	45	0	7	47	1.30
5369955--5370069	42	2.8	42	86	4	153	30	14	10	44	1.79
5371020--5371120	33	3.0	32	72	19	80	53	0	0	45	1.07
5371772--5371819	9	5.1	9	79	5	51	54	2	0	43	1.12
5372774--5372826	21	2.4	22	84	9	72	45	11	3	39	1.58
5372870--5372901	2	16.5	2	93	6	57	50	0	0	50	1.00
5381396--5381426	7	4.4	7	91	0	53	12	3	9	74	1.19
5381771--5381827	30	1.9	30	82	7	71	28	0	10	61	1.29
5381975--5382006	15	2.1	15	94	0	55	62	0	0	37	0.95
5384745--5384811	33	2.0	33	100	0	134	26	26	8	37	1.86
5390618--5390670	13	3.8	14	75	9	54	26	16	13	43	1.85
5391016--5391225	44	4.8	44	81	8	189	32	10	14	42	1.80
5391053--5391214	43	3.7	43	84	10	195	33	10	15	40	1.82
5391014--5391242	88	2.6	87	76	10	218	32	10	14	42	1.80
5391017--5391243	43	5.2	43	76	12	169	32	10	14	42	1.80
5391954--5391984	16	1.9	16	93	0	53	9	0	9	80	0.90
5392316--5392345	14	2.2	14	94	5	53	13	0	13	73	1.10
5392433--5392468	16	2.2	17	90	5	56	44	2	8	44	1.48
5400147--5400199	22	2.5	20	80	14	61	3	13	1	81	0.92
5400153--5400206	17	3.1	17	86	5	72	3	16	1	77	1.00
5401770--5401841	34	2.0	33	84	15	90	65	2	0	31	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5403312--5403355	21	2.1	21	95	0	79	25	13	4	56	1.56
5413046--5413094	20	2.5	19	80	6	53	75	0	14	10	1.04
5413906--5414106	48	4.1	48	81	6	192	30	11	15	42	1.82
5414110--5414514	49	8.3	49	76	8	310	29	10	16	43	1.81
5413927--5414278	183	1.9	180	83	4	456	30	11	15	42	1.82
5414179--5414556	49	8.0	46	76	9	232	28	10	18	42	1.84
5414108--5414561	97	4.7	94	76	10	334	29	10	17	42	1.82
5414480--5414641	44	3.7	44	82	8	177	27	12	19	40	1.87
5414753--5414787	9	3.8	9	85	7	52	0	14	0	85	0.59
5415152--5415191	21	1.9	21	85	10	55	70	22	2	5	1.19
5418504--5418547	21	2.0	22	83	12	56	29	2	15	52	1.55
5423904--5423963	29	2.0	30	87	9	88	40	1	1	56	1.19
5424163--5424227	25	2.5	25	73	19	62	32	0	6	61	1.21
5424246--5424296	21	2.4	21	80	3	57	43	7	0	49	1.32
5424506--5424559	24	2.2	23	78	12	54	53	0	5	40	1.24
5424620--5424672	20	2.7	20	74	14	56	37	1	3	56	1.28
5429149--5429182	17	1.9	18	88	5	52	8	23	0	67	1.18
5430700--5430761	31	2.0	32	84	9	83	50	1	1	46	1.20
5430852--5430911	30	2.0	30	83	6	77	46	1	0	51	1.10
5430883--5430947	26	2.6	25	78	9	78	44	7	0	47	1.31
5431057--5431086	15	2.1	15	93	6	53	56	0	0	43	0.99
5436149--5436211	2	31.5	2	100	0	126	0	49	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5436242--5436275	16	2.1	16	89	10	52	26	0	0	73	0.83
5437416--5437448	4	8.2	4	100	0	66	24	0	0	75	0.80
5438156--5438181	2	13.0	2	100	0	52	50	0	0	50	1.00
5440686--5440743	30	2.1	27	84	15	75	22	6	0	70	1.10
5441700--5441733	13	2.6	14	86	13	54	20	0	8	70	1.13
5445944--5445999	25	2.3	25	81	6	71	35	0	1	62	1.06
5446036--5446078	20	2.3	19	88	8	61	65	4	0	30	1.13
5446342--5446375	2	17.0	2	100	0	68	50	0	0	50	1.00
5449059--5449083	9	2.8	9	100	0	50	32	0	0	68	0.90
5463072--5463105	17	2.0	17	100	0	68	52	5	17	23	1.66
5463585--5463616	2	16.5	2	93	6	57	50	0	0	50	1.00
5465149--5465203	27	2.0	27	82	0	65	36	1	40	21	1.64
5467532--5467574	22	2.0	22	95	4	79	32	18	9	39	1.83
5468058--5468264	107	1.9	107	93	0	351	43	12	14	29	1.81
5477880--5477926	15	3.1	15	82	11	53	23	0	10	65	1.23
5478051--5478083	15	2.3	15	89	5	50	30	0	0	69	0.88
5478332--5478448	61	1.9	61	87	0	171	29	6	11	52	1.64
5479388--5479418	2	15.5	2	93	0	53	3	0	45	51	1.17
5479386--5479422	8	4.6	8	93	0	56	8	0	40	51	1.32
5483907--5483947	21	2.0	21	85	9	57	65	7	7	19	1.41
5486498--5486530	17	2.0	17	88	5	50	63	0	3	33	1.10
5486728--5486752	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5487625--5487659	15	2.3	15	95	0	61	0	25	14	60	1.35
5488263--5488287	2	12.5	2	100	0	50	52	0	48	0	1.00
5488952--5488986	17	2.1	17	89	10	54	28	0	0	71	0.86
5489044--5489068	13	1.9	13	100	0	50	24	0	0	76	0.80
5505381--5505423	14	3.2	14	84	15	56	60	0	0	39	0.97
5506740--5506831	38	2.3	39	79	9	96	54	2	3	40	1.29
5506918--5506965	19	2.5	19	83	6	62	33	2	0	64	1.05
5511079--5511111	14	2.4	14	90	5	50	30	0	12	57	1.35
5511219--5511259	12	3.4	12	81	18	50	34	0	2	63	1.08
5526198--5526263	16	4.1	16	70	7	53	42	0	3	54	1.15
5526288--5526316	15	2.0	15	93	6	51	34	0	0	65	0.93
5526781--5527164	129	2.9	131	80	9	408	31	10	9	49	1.68
5527814--5527865	25	2.1	24	82	10	61	19	3	23	53	1.61
5529982--5530020	20	2.0	20	94	0	69	28	15	5	51	1.64
5530680--5530734	22	2.5	22	82	2	58	21	0	16	61	1.34
5530708--5530734	14	1.9	14	100	0	54	22	0	7	70	1.12
5534573--5534660	41	2.1	41	81	4	97	32	11	13	42	1.80
5543575--5543624	25	2.0	24	81	14	57	24	2	2	72	1.06
5543631--5543667	14	2.5	16	87	12	53	37	0	0	62	0.96
5543664--5543718	20	2.6	21	75	25	53	49	0	0	50	1.00
5543722--5543751	15	2.1	14	93	6	51	60	0	0	40	0.97
5557036--5557097	30	2.1	30	96	0	115	27	25	14	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5557066--5557220	81	1.9	81	94	0	274	30	28	12	28	1.93
5560181--5560222	3	14.0	3	100	0	84	0	33	0	66	0.92
5560906--5560961	26	2.2	26	90	6	87	60	8	1	28	1.37
5561334--5561384	18	2.7	19	82	11	61	49	0	0	50	1.00
5561393--5561434	19	2.3	19	87	4	59	59	0	0	40	0.97
5564559--5564583	2	12.5	2	100	0	50	52	0	48	0	1.00
5570626--5570686	30	2.0	30	87	0	86	24	4	22	47	1.71
5572277--5572309	17	1.9	17	93	0	57	45	21	15	18	1.85
5578781--5578932	51	3.0	51	77	6	164	48	1	15	34	1.57
5578979--5579063	24	3.5	24	73	10	75	38	9	28	23	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131