genome.fa.s2.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  72  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13591486--13591538	26	2.0	26	96	0	97	28	20	24	26	1.99
13591298--13591548	129	1.9	129	87	4	364	25	29	23	21	1.99
13592367--13592419	26	2.0	26	92	0	88	28	18	24	28	1.98
13591509--13593104	876	1.8	864	89	1	2318	25	22	25	26	2.00
13592523--13594023	718	2.1	715	85	4	2058	25	23	24	26	2.00
13594201--13596315	714	2.9	713	89	1	3180	26	22	23	27	2.00
13596288--13596338	26	2.0	26	92	0	84	27	15	27	29	1.96
13596468--13598875	717	3.4	714	86	3	3286	26	22	23	26	2.00
13599420--13599472	26	2.0	26	92	0	88	28	22	22	26	1.99
13601023--13601073	26	2.0	26	92	7	86	27	15	29	27	1.96
13600275--13603729	902	3.9	876	84	5	4240	26	23	24	25	2.00
13603057--13604752	715	2.4	718	88	2	2550	26	22	23	27	1.99
13605084--13605136	26	2.0	26	96	0	97	28	20	24	26	1.99
13607678--13607730	26	2.0	26	92	0	88	28	18	24	28	1.98
13609275--13609327	26	2.0	26	92	0	88	30	20	22	26	1.98
13607756--13612862	877	5.8	875	83	6	6108	25	23	24	26	2.00
13614711--13614802	8	11.4	8	72	23	68	47	0	1	51	1.07
13614710--13614802	40	2.3	39	83	10	116	48	0	1	50	1.07
13614900--13614953	26	2.1	26	92	0	90	27	18	25	27	1.98
13615788--13615840	26	2.0	26	96	0	97	26	20	24	28	1.99
13616684--13616739	26	2.2	26	93	0	94	26	19	23	30	1.98
13614831--13619358	895	5.1	892	85	4	5820	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13618439--13618491	26	2.0	26	96	0	97	28	20	26	24	1.99
13618622--13620066	715	2.0	705	87	4	2095	26	22	24	26	2.00
13620045--13620097	26	2.0	26	92	0	88	28	22	24	24	2.00
13621861--13621913	26	2.0	26	92	0	88	26	16	26	30	1.97
13619315--13622676	914	3.7	902	88	2	4862	25	23	24	26	2.00
13624370--13624422	26	2.0	26	92	0	88	24	18	26	30	1.98
13623493--13629825	905	7.1	889	85	4	7637	25	24	24	25	2.00
13628804--13628856	26	2.0	26	92	0	88	28	18	24	28	1.98
13629699--13629751	26	2.0	26	88	0	79	30	18	22	28	1.98
13630531--13630589	26	2.3	26	93	0	109	10	37	25	27	1.88
13632054--13632103	26	1.9	26	100	0	100	28	20	30	22	1.98
13633626--13633678	26	2.0	26	96	0	97	26	18	26	28	1.98
13635400--13635452	26	2.0	26	92	0	88	28	18	24	28	1.98
13636287--13636339	26	2.0	26	92	0	88	26	20	24	28	1.99
13632886--13637207	888	4.8	884	84	4	5339	25	23	24	25	2.00
13636443--13639177	715	3.8	711	86	3	3953	26	22	23	26	2.00
13641911--13641990	26	3.1	26	88	0	124	28	21	23	26	1.99
13642813--13642865	26	2.0	26	92	7	90	26	16	26	30	1.97
13639178--13644625	871	6.2	874	82	7	6171	25	24	24	25	2.00
13643841--13645325	718	2.1	718	89	1	2300	25	24	23	26	2.00
13646200--13646252	26	2.0	26	100	0	106	26	20	26	26	1.99
13644559--13647122	896	2.9	890	88	2	3657	25	24	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13646356--13650879	713	6.3	715	87	3	6263	26	23	23	26	2.00
13651309--13651361	26	2.0	26	96	0	97	26	18	26	28	1.98
13653070--13653122	26	2.0	26	92	0	88	28	16	26	28	1.97
13653969--13654021	26	2.0	26	92	0	88	28	18	24	28	1.98
13654879--13654929	26	2.0	26	96	0	93	29	19	25	25	1.99
13655766--13655818	26	2.0	26	96	0	97	30	22	22	24	1.99
13657574--13657626	26	2.0	26	88	0	79	32	20	20	26	1.98
13658460--13658512	26	2.0	26	96	0	97	32	20	20	26	1.98
13651744--13661166	886	10.5	899	86	3	12142	25	24	25	25	2.00
13659359--13659411	26	2.0	26	88	0	79	28	20	24	26	1.99
13663284--13663336	26	2.0	26	100	0	106	26	20	26	26	1.99
13664109--13664142	11	3.1	11	86	0	50	20	26	32	20	1.97
13664221--13664273	26	2.0	26	92	0	88	24	20	26	28	1.99
13665119--13665171	26	2.0	26	92	0	88	28	16	22	32	1.96
13666019--13666074	26	2.2	26	96	0	103	25	21	25	28	1.99
13662468--13667995	899	6.1	893	83	5	6470	25	23	24	25	2.00
13666898--13666949	26	2.0	26	88	0	77	28	23	19	28	1.98
13667784--13667836	26	2.0	26	92	0	88	26	16	26	30	1.97
13667764--13668179	185	2.2	185	84	3	534	22	26	27	23	1.99
13669583--13669634	26	2.0	26	100	0	104	26	19	26	26	1.99
13670504--13670529	4	6.5	4	100	0	52	0	26	73	0	0.84
13671178--13671247	25	2.7	26	95	4	133	30	18	24	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13672100--13672151	26	2.0	26	96	0	95	28	19	25	26	1.98
13670427--13673016	904	2.8	895	84	5	3305	25	23	24	26	2.00
13672259--13673771	716	2.1	717	88	2	2234	26	23	23	26	2.00
13674481--13674507	11	2.5	11	100	0	54	7	33	33	25	1.84
13672980--13676281	867	3.7	899	85	5	4261	25	23	24	26	2.00
13677191--13677242	26	2.0	26	92	0	86	28	21	25	25	1.99
13676443--13678980	904	2.8	898	87	3	3537	26	23	24	25	2.00
13679491--13679541	26	2.0	26	96	0	93	29	19	25	25	1.99
13680395--13680446	26	2.0	26	92	0	86	28	17	25	28	1.97
13679103--13682235	901	3.5	900	86	3	4194	25	24	24	25	2.00
13681292--13681344	26	2.0	26	92	0	88	24	18	28	28	1.98
13682810--13682840	12	2.6	12	100	0	62	22	29	22	25	1.99
13683336--13683388	26	2.0	26	85	0	70	32	16	22	28	1.96
13683362--13683735	158	2.4	158	88	1	534	22	27	29	20	1.98
13684390--13684442	26	2.0	26	89	7	81	28	18	22	30	1.98
13686891--13686943	26	2.0	26	96	0	97	28	20	24	26	1.99
13685128--13687814	897	3.0	898	86	2	3684	25	24	24	26	2.00
13689388--13689442	28	2.0	28	93	6	96	27	20	27	25	1.99
13691163--13691215	26	2.0	26	85	0	70	26	20	22	30	1.98
13692260--13693735	718	2.1	719	89	2	2268	26	23	23	26	2.00
13694600--13694652	26	2.0	26	89	7	81	28	20	22	28	1.99
13693050--13723367	891	33.8	891	75	10	19955	25	23	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13696393--13696445	26	2.0	26	96	0	97	26	18	26	28	1.98
13698192--13698275	26	3.2	26	93	1	132	26	19	25	29	1.98
13700011--13700063	26	2.0	26	96	0	97	28	20	24	26	1.99
13700898--13700950	26	2.0	26	92	0	88	26	16	26	30	1.97
13702671--13702723	26	2.0	26	100	0	106	26	20	26	26	1.99
13703566--13703618	26	2.0	26	92	0	88	28	18	24	28	1.98
13706058--13706110	26	2.0	26	92	0	88	28	18	24	28	1.98
13706950--13707002	26	2.0	26	96	0	97	26	16	24	32	1.97
13708418--13708470	26	2.0	26	96	0	97	30	18	22	28	1.98
13711784--13711835	26	2.0	26	92	0	86	30	19	23	26	1.98
13714472--13714520	26	1.9	26	95	4	91	28	20	26	24	1.99
13717986--13718037	26	2.0	26	92	0	86	30	19	19	30	1.96
13719748--13719818	26	2.7	26	100	0	142	28	21	26	23	1.99
13720664--13720716	26	2.0	26	100	0	106	26	16	26	30	1.97
13721565--13721617	26	2.0	26	88	0	79	24	18	24	32	1.97
13718879--13723367	900	5.0	897	83	5	5436	25	23	25	26	2.00
13725098--13725149	25	2.0	26	92	3	88	25	17	26	30	1.97
13723412--13727771	882	4.9	886	84	6	5232	25	24	24	26	2.00
13731402--13731454	27	2.0	26	88	3	79	28	18	20	32	1.97
13732286--13732338	26	2.0	26	92	0	88	28	20	22	28	1.99
13733184--13733236	26	2.0	27	88	3	81	28	18	26	26	1.98
13734066--13734118	26	2.0	26	100	0	106	26	16	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13734970--13735022	26	2.0	26	88	0	79	24	18	24	32	1.97
13731133--13736774	901	6.3	897	84	4	7039	25	23	25	25	2.00
13738490--13738542	26	2.0	26	96	0	97	24	16	28	30	1.97
13736790--13741169	899	4.9	896	85	4	5745	25	24	24	25	2.00
13741851--13741903	26	2.0	26	88	0	79	30	18	22	28	1.98
13741116--13744578	895	3.9	895	86	3	4608	25	23	24	26	2.00
13743438--13743468	12	2.6	12	89	0	53	38	19	25	16	1.92
13743654--13743706	26	2.0	26	96	0	97	28	20	24	26	1.99
13745268--13745320	26	2.0	26	92	0	88	28	20	22	28	1.99
13746887--13746939	26	2.0	26	92	0	88	28	18	24	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131