genome.fa.s2.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  49  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10127071--10127450	129	3.0	129	82	10	457	34	12	7	45	1.70
10127258--10127475	120	1.8	121	93	2	386	33	13	6	46	1.69
10126951--10127450	249	2.0	246	91	4	808	35	12	7	45	1.68
10127200--10127495	58	5.1	57	80	9	305	35	12	6	45	1.68
10127503--10127585	17	5.0	16	73	15	62	78	2	6	13	1.04
10127486--10127582	39	2.4	38	81	10	106	78	2	5	14	1.01
10127486--10127573	8	10.6	8	69	19	56	79	2	4	13	0.98
10127491--10127584	11	8.4	11	76	13	68	79	2	4	13	0.97
10128295--10128455	4	40.0	4	70	16	68	64	4	1	29	1.23
10128310--10128374	22	3.0	22	76	17	55	63	4	1	30	1.24
10128263--10128363	38	2.5	42	75	18	115	64	4	2	27	1.29
10128263--10128369	21	5.3	21	72	17	84	63	5	2	28	1.31
10128263--10128446	80	2.3	82	79	13	197	63	4	2	28	1.29
10128469--10128516	22	2.2	22	92	7	80	79	2	0	18	0.84
10128472--10128516	17	2.6	16	82	10	54	77	2	0	20	0.87
10128665--10128704	6	7.0	6	91	8	50	10	0	2	87	0.63
10128666--10128705	15	2.8	14	85	7	53	7	0	2	90	0.55
10128678--10128708	16	1.9	16	93	0	53	3	0	6	90	0.55
10128715--10128973	42	6.2	42	87	2	324	35	23	17	23	1.96
10129984--10130013	8	3.8	8	95	0	51	10	6	0	83	0.81
10136697--10137004	59	5.2	57	83	7	359	35	13	7	43	1.73
10136697--10137027	118	2.8	116	87	5	454	35	12	7	43	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10137023--10137107	5	16.8	5	72	22	63	78	2	4	14	1.00
10137022--10137108	30	3.0	28	79	17	88	77	2	6	13	1.08
10137023--10137100	22	3.9	20	75	24	76	79	2	3	14	0.98
10137018--10137102	40	2.2	39	83	12	111	77	2	5	14	1.05
10137023--10137107	17	5.2	16	72	16	68	78	2	4	14	1.00
10137130--10137174	4	11.5	4	81	13	58	75	2	0	22	0.91
10137130--10137170	21	1.9	22	95	5	75	75	2	0	21	0.92
10137658--10137688	15	2.1	15	93	0	53	70	3	0	25	1.02
10137702--10137750	22	2.2	23	88	3	73	77	2	2	18	0.96
10147542--10147575	18	1.9	17	88	5	50	61	5	20	11	1.50
10150037--10150061	2	12.5	2	100	0	50	48	0	0	52	1.00
10151405--10151446	6	6.7	6	86	8	57	33	2	19	45	1.63
10163735--10163760	2	13.0	2	100	0	52	50	0	0	50	1.00
10165594--10165641	25	1.9	25	83	8	62	45	2	8	43	1.45
10165579--10165922	189	1.8	186	86	5	505	44	7	9	38	1.66
10173392--10173461	33	2.1	33	86	5	97	30	15	18	35	1.92
10173726--10173871	44	3.4	43	83	4	179	30	15	10	43	1.80
10173867--10173972	43	2.5	43	86	6	135	27	14	13	45	1.81
10173955--10173992	19	2.0	20	89	5	60	31	7	13	47	1.71
10173912--10174036	63	2.0	63	83	9	157	27	12	14	45	1.81
10175010--10175066	21	2.8	20	84	12	71	19	0	3	77	0.92
10175029--10175076	21	2.3	21	86	10	64	25	0	4	70	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10175133--10175496	194	1.9	192	82	8	461	42	8	10	39	1.69
10182179--10182223	2	22.5	2	90	0	72	48	2	2	46	1.26
10192011--10192115	30	3.6	28	79	12	104	54	3	1	40	1.30
10192036--10192128	28	3.2	28	80	8	82	56	3	2	37	1.27
10193626--10193669	21	2.3	19	88	11	63	38	9	2	50	1.47
10196658--10196799	75	1.9	77	86	2	207	42	4	6	46	1.48
10201426--10201497	35	2.1	35	89	0	108	36	20	11	31	1.88
10207236--10207305	25	2.8	26	72	20	69	67	10	2	20	1.33
10207302--10207343	3	14.0	3	89	0	66	61	0	4	33	1.17
10207709--10207827	49	2.4	48	81	12	145	42	16	9	31	1.80
10207768--10208027	132	2.0	133	85	3	355	41	13	14	30	1.85
10208676--10208712	18	2.1	18	89	0	56	18	13	2	64	1.39
10222670--10222724	27	2.0	27	89	0	83	40	20	7	32	1.80
10223271--10223707	60	7.3	58	80	8	441	36	12	6	44	1.69
10223292--10223732	180	2.5	181	89	2	671	36	12	6	43	1.69
10223528--10223570	19	2.2	20	83	4	52	34	13	6	44	1.72
10226470--10226538	22	3.2	21	67	15	59	60	11	5	21	1.51
10226469--10226589	44	2.7	44	79	3	136	57	10	8	23	1.59
10226463--10226528	22	3.0	22	68	14	55	57	12	7	22	1.60
10227286--10227330	14	3.1	14	80	3	54	64	15	4	15	1.44
10227365--10227443	33	2.5	31	85	8	97	58	12	5	24	1.54
10227434--10227499	35	1.9	34	87	9	98	48	16	9	25	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10227434--10227499	34	1.9	35	87	9	100	48	16	9	25	1.76
10227546--10227633	6	14.0	6	89	5	77	72	11	0	15	1.11
10227548--10227633	12	6.8	12	84	7	100	73	11	0	15	1.10
10227548--10227646	25	3.9	25	84	5	119	75	10	1	13	1.09
10228558--10228620	19	3.3	19	86	8	83	68	6	4	20	1.31
10228550--10228622	19	3.8	21	84	12	79	69	5	4	20	1.25
10229144--10229182	6	6.2	6	82	11	51	76	0	17	5	0.96
10229144--10229182	13	3.1	12	85	10	51	76	0	17	5	0.96
10230409--10230485	12	6.5	11	76	8	55	77	0	14	7	0.97
10230425--10230485	12	5.1	12	80	9	63	78	0	13	8	0.95
10230811--10230844	18	1.9	17	88	5	50	35	0	2	61	1.11
10232171--10232224	3	18.3	3	96	3	101	33	0	0	66	0.92
10233216--10233261	22	2.1	21	84	4	56	52	0	4	43	1.21
10234544--10234616	20	3.6	20	86	1	101	47	12	5	34	1.64
10234752--10234815	20	3.1	20	76	13	67	51	21	0	26	1.48
10234757--10234823	29	2.3	31	84	7	95	47	25	1	25	1.60
10236370--10236404	17	2.1	17	100	0	70	48	11	0	40	1.39
10246414--10246500	37	2.4	37	86	9	124	54	9	2	34	1.45
10246838--10246981	59	2.5	59	84	4	188	54	23	4	17	1.62
10247755--10247793	20	1.9	21	89	5	62	30	15	17	35	1.91
10247970--10248065	44	2.3	41	80	8	113	38	0	4	57	1.18
10248618--10248675	26	2.2	27	81	9	66	55	0	10	34	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10260186--10260274	21	4.3	20	69	17	58	71	3	4	20	1.17
10261023--10261053	15	2.1	15	93	0	53	61	0	3	35	1.12
10265038--10265078	14	2.9	14	88	0	55	24	24	19	31	1.98
10266322--10266375	26	2.1	26	92	0	90	50	3	1	44	1.30
10268137--10268181	15	2.9	15	86	3	54	13	8	4	73	1.23
10268154--10268185	15	2.1	16	94	5	57	12	12	0	75	1.06
10270681--10270718	20	1.9	20	88	0	58	55	7	7	28	1.57
10272755--10272824	14	4.9	14	75	6	59	47	25	4	22	1.70
10272753--10272822	29	2.4	29	83	4	97	48	25	4	21	1.68
10272755--10272807	14	3.7	14	82	5	61	47	26	5	20	1.72
10274010--10274133	32	4.0	32	69	20	102	66	4	0	29	1.16
10273997--10274055	26	2.3	26	82	5	66	66	5	0	28	1.13
10275924--10276037	57	2.0	59	89	6	180	45	12	8	33	1.72
10284089--10284153	19	3.4	19	86	0	94	18	0	38	43	1.50
10284069--10284153	38	2.2	37	83	8	100	17	0	38	43	1.49
10286923--10287070	79	1.9	79	81	5	183	41	12	12	33	1.80
10287187--10287274	43	2.0	43	82	4	106	39	14	11	34	1.82
10288055--10288164	40	2.7	39	83	6	114	39	10	13	36	1.80
10288235--10288280	21	2.1	23	84	15	62	26	21	2	50	1.60
10290104--10290168	25	2.5	27	76	18	75	6	23	1	69	1.20
10290473--10290506	17	1.9	18	88	5	52	11	5	0	82	0.83
10293806--10294014	37	5.6	37	77	4	186	35	10	21	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10293980--10294044	30	2.2	30	85	0	85	33	7	27	30	1.85
10294312--10294352	11	3.5	12	84	12	50	2	2	12	82	0.86
10296121--10296206	31	2.8	31	73	15	88	18	1	33	46	1.57
10296165--10296190	12	2.2	12	100	0	52	15	0	38	46	1.46
10296176--10296252	19	4.1	19	84	1	93	18	1	36	44	1.58
10296179--10296263	19	4.5	19	80	4	84	21	2	31	44	1.65
10296261--10296298	14	2.8	14	80	4	51	10	0	36	52	1.36
10304082--10304158	3	25.7	3	97	0	145	33	1	0	64	1.01
10304368--10304581	63	3.4	63	86	3	272	33	18	22	26	1.97
10305676--10305996	144	2.2	144	83	2	403	36	12	16	33	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131