genome.fa.s2.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  112  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19977799--19977852	22	2.5	21	79	8	54	61	3	7	27	1.40
19977864--19977910	17	2.8	16	83	6	58	78	2	2	17	0.94
19977877--19977914	19	2.0	19	85	10	51	78	0	2	18	0.86
19977863--19977916	23	2.3	23	81	12	65	77	1	1	18	0.95
19977896--19977948	16	3.1	16	75	19	52	66	5	0	28	1.15
19987252--19987373	32	3.9	31	80	5	122	37	2	8	51	1.45
19987763--19988628	439	2.0	439	98	0	1680	42	9	13	34	1.76
19991330--19991474	73	2.0	74	84	5	195	38	12	22	26	1.89
19993420--19993453	11	3.0	11	87	8	50	35	0	0	64	0.94
20001232--20001258	14	1.9	14	100	0	54	40	0	0	59	0.98
20001337--20001381	22	2.1	22	83	4	56	17	2	8	71	1.23
20004782--20004822	18	2.3	18	100	0	82	56	9	12	21	1.65
20005223--20005766	159	3.4	157	78	5	511	36	6	17	39	1.75
20006272--20006315	21	2.1	22	87	8	65	29	0	15	54	1.42
20006692--20006722	13	2.4	13	94	0	53	32	6	12	48	1.67
20006850--20006918	31	2.2	31	82	5	86	49	4	10	36	1.57
20006850--20006901	15	3.4	15	72	15	52	50	5	11	32	1.62
20010654--20010694	21	1.9	22	85	5	57	53	4	7	34	1.50
20011395--20011499	38	2.7	40	89	5	169	66	11	12	9	1.44
20011591--20011663	36	2.2	34	80	11	80	24	15	8	52	1.70
20015801--20016672	436	2.0	433	83	7	1106	53	9	9	26	1.65
20016940--20016977	19	1.9	20	84	10	51	28	10	0	60	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20020107--20020131	13	1.9	13	100	0	50	48	0	12	40	1.40
20020212--20020262	20	2.5	20	93	6	86	54	5	5	33	1.48
20020262--20020295	17	1.9	17	88	5	50	38	2	17	41	1.65
20023027--20023084	25	2.3	25	100	0	116	32	20	15	31	1.94
20028468--20028500	15	2.3	15	89	5	50	36	3	0	60	1.12
20028304--20028580	52	5.2	52	75	10	222	49	3	4	42	1.41
20028606--20028648	19	2.2	21	80	16	56	41	4	0	53	1.21
20028690--20028837	50	2.9	50	80	4	125	56	4	5	33	1.43
20029207--20029255	22	2.2	23	85	3	64	59	2	2	36	1.21
20040767--20040835	2	34.5	2	85	0	93	47	4	1	46	1.31
20043836--20043885	23	2.2	23	89	3	75	42	2	4	52	1.31
20045554--20045592	14	2.8	14	80	0	51	74	5	0	20	1.01
20045650--20045681	13	2.3	15	84	15	50	46	0	0	53	1.00
20046271--20046320	26	1.9	26	83	0	64	10	6	6	78	1.10
20051904--20051961	25	2.3	25	100	0	116	32	20	15	31	1.94
20055340--20055370	3	10.3	3	92	0	53	32	32	0	35	1.58
20057397--20057442	23	2.1	22	84	8	58	32	2	2	63	1.19
20059892--20059951	26	2.3	26	79	0	66	61	3	1	33	1.22
20059899--20060029	68	1.9	67	83	7	167	62	3	0	32	1.18
20061746--20061795	21	2.5	21	90	9	79	48	0	2	50	1.12
20061743--20061795	18	2.8	19	84	15	74	47	0	1	50	1.12
20061790--20061820	16	1.9	16	93	0	53	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20061784--20061824	22	2.0	22	90	9	68	63	0	0	36	0.95
20063361--20063426	32	2.1	32	82	0	78	50	9	0	40	1.34
20064649--20064689	6	6.8	6	97	0	73	51	12	0	36	1.40
20065249--20065289	21	2.0	21	85	0	55	65	0	4	29	1.13
20070291--20070350	13	4.6	13	70	15	52	43	6	1	48	1.39
20073914--20073947	17	2.0	17	88	0	50	20	14	2	61	1.46
20081905--20081948	21	2.0	22	82	4	54	65	6	0	27	1.17
20092765--20092829	22	3.0	22	84	4	69	32	1	0	66	1.01
20093187--20093231	23	2.0	23	86	0	63	42	0	2	55	1.12
20093805--20093896	46	2.0	44	83	10	114	32	3	9	54	1.49
20094928--20094952	13	1.9	13	100	0	50	44	0	0	56	0.99
20095938--20095962	12	2.1	12	100	0	50	32	16	20	32	1.94
20096085--20096128	15	2.8	16	79	6	54	50	0	0	50	1.00
20096076--20096121	15	3.1	15	79	11	51	52	0	0	47	1.00
20096192--20096240	16	3.0	17	72	22	50	48	0	2	48	1.12
20096183--20096275	29	3.3	29	77	14	97	49	0	1	49	1.07
20096866--20096892	1	27.0	1	100	0	54	100	0	0	0	0.00
20107769--20107870	51	2.0	52	82	5	127	50	1	5	42	1.38
20108019--20108061	19	2.2	21	80	16	56	41	4	0	53	1.21
20108103--20108250	50	2.9	50	80	4	125	56	4	5	33	1.43
20108620--20108668	22	2.2	23	85	3	64	59	2	2	36	1.21
20119681--20119710	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20120171--20120219	2	24.5	2	82	0	62	48	4	2	44	1.33
20123198--20123247	23	2.2	23	89	3	75	42	2	4	52	1.31
20125518--20125569	26	2.0	25	89	10	79	71	0	0	28	0.87
20125521--20125571	13	4.2	11	83	16	57	74	0	0	25	0.82
20128418--20128460	2	22.0	2	90	4	70	48	0	0	51	1.00
20131941--20131978	18	2.1	18	90	0	58	57	5	2	34	1.35
20134880--20134917	19	2.0	20	85	10	53	55	0	2	42	1.14
20135521--20135575	28	2.0	28	82	7	67	49	1	3	45	1.30
20140735--20140837	52	2.0	52	84	3	136	26	7	17	48	1.74
20140840--20140968	42	3.0	42	74	5	118	29	10	16	44	1.80
20141848--20141900	19	2.8	18	75	11	52	18	0	22	58	1.39
20142255--20142332	5	15.6	5	74	15	72	16	3	2	76	1.04
20142249--20142332	21	3.5	26	66	19	67	15	4	2	77	1.04
20142270--20142332	9	6.3	11	80	14	50	15	3	3	77	1.02
20142269--20142369	21	4.9	21	70	21	63	15	3	2	77	1.04
20142309--20142375	13	5.1	13	72	21	50	17	2	1	77	0.97
20143393--20143587	101	1.9	101	90	0	309	27	10	13	48	1.75
20145420--20145454	3	11.7	3	100	0	70	34	0	0	65	0.93
20146842--20146886	21	2.1	21	84	8	56	73	2	6	17	1.15
20148910--20148961	16	3.2	17	78	10	54	26	1	7	63	1.32
20150065--20150133	16	4.3	16	80	10	70	21	7	15	55	1.65
20150407--20150465	16	3.6	16	76	2	64	16	5	16	61	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20150407--20150465	17	3.6	17	72	9	59	16	5	16	61	1.52
20150407--20150474	16	4.2	16	77	3	57	19	5	14	60	1.54
20151546--20151585	12	3.3	12	85	0	53	45	5	5	45	1.47
20151546--20151584	10	3.9	10	86	0	51	43	5	5	46	1.48
20152494--20152569	30	2.5	31	79	8	77	36	7	5	50	1.54
20152543--20152631	30	3.0	29	80	3	88	34	7	5	51	1.54
20155158--20155231	11	6.5	11	68	20	53	36	1	1	60	1.13
20155627--20155655	14	2.1	14	93	6	51	62	0	6	31	1.22
20165565--20165618	7	7.3	7	78	12	54	20	3	0	75	0.95
20165572--20165621	15	3.4	14	86	13	66	22	2	0	76	0.89
20166596--20166628	17	1.9	17	88	11	50	75	3	9	12	1.14
20171182--20171239	10	5.7	10	78	11	55	29	3	0	67	1.07
20172195--20172283	36	2.4	37	85	10	119	6	5	15	71	1.26
20172485--20172513	13	2.3	13	94	5	51	82	0	17	0	0.66
20172834--20173037	51	4.1	48	77	6	174	42	14	9	33	1.78
20172856--20173232	100	3.8	99	73	7	302	42	14	8	34	1.75
20172752--20173040	49	5.8	49	76	4	220	40	16	10	32	1.82
20173440--20173467	9	3.1	9	100	0	56	46	21	10	21	1.81
20177411--20177673	124	2.1	123	85	2	348	32	10	11	45	1.74
20183861--20183924	27	2.4	26	82	14	78	7	1	7	82	0.89
20183862--20183927	19	3.5	19	80	8	73	7	1	7	83	0.87
20185324--20185374	22	2.3	22	86	0	66	29	1	0	68	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20185316--20185363	10	4.7	10	80	12	53	31	4	0	64	1.12
20186507--20186536	3	10.0	3	100	0	60	66	0	0	33	0.92
20190720--20190768	23	2.1	23	84	0	62	71	2	0	26	0.97
20190720--20190759	12	3.4	12	86	6	55	75	2	0	22	0.93
20191465--20191499	18	2.0	18	88	5	54	5	2	11	80	1.00
20191716--20191757	12	3.6	12	80	6	50	78	0	21	0	0.75
20194827--20194852	1	26.0	1	100	0	52	0	0	0	100	0.00
20195480--20195522	19	2.1	21	83	8	54	48	2	0	48	1.14
20195886--20195917	17	1.9	16	93	6	55	40	0	0	59	0.97
20202815--20203541	87	8.3	87	85	4	705	38	14	28	18	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131