genome.fa.s2.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  40  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8581483--8581526	21	2.1	21	86	0	61	27	2	13	56	1.49
8581508--8581554	13	3.5	13	80	11	58	42	0	8	48	1.33
8581536--8581588	22	2.3	24	84	12	67	37	1	7	52	1.41
8582447--8582493	12	4.0	11	81	13	58	19	4	0	76	0.95
8582431--8582517	20	4.6	18	76	22	72	19	5	0	74	1.01
8582445--8582513	23	3.1	22	80	17	65	20	4	0	75	0.97
8586628--8586669	17	2.6	16	85	10	59	52	2	2	42	1.27
8586833--8586892	16	4.1	16	68	26	51	53	3	0	43	1.17
8586844--8586893	26	1.9	26	95	0	91	50	4	0	46	1.20
8586909--8586956	21	2.1	21	85	11	60	54	8	4	33	1.50
8587909--8588021	56	2.0	56	87	3	165	19	9	19	51	1.74
8593034--8593191	58	2.7	57	87	3	226	33	10	3	53	1.51
8594288--8594320	16	2.1	16	88	11	50	78	0	3	18	0.87
8594533--8594743	40	5.1	41	82	6	230	44	19	14	21	1.86
8594533--8594749	80	2.6	82	85	5	276	43	19	14	22	1.87
8595243--8595564	46	6.9	46	81	5	346	38	13	9	38	1.77
8595317--8595616	163	1.8	163	91	1	494	40	13	8	38	1.75
8595246--8595615	46	7.9	47	77	12	295	39	12	9	37	1.76
8595243--8595615	117	3.2	116	80	8	402	39	13	9	37	1.77
8596844--8597015	9	18.4	9	78	14	136	8	14	0	76	1.00
8596844--8596936	25	3.8	25	72	21	74	11	8	0	79	0.93
8596898--8596953	25	2.2	25	78	6	60	7	17	0	75	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8596880--8596985	8	13.1	8	74	7	65	6	16	0	77	0.97
8596958--8597012	20	2.8	20	84	13	69	7	18	0	74	1.04
8600852--8601133	59	4.8	58	84	6	352	36	10	4	48	1.59
8600855--8601149	120	2.5	119	86	5	389	36	10	4	49	1.57
8602197--8602258	15	3.9	16	74	14	56	74	6	4	14	1.19
8604422--8604470	24	2.0	24	84	11	64	28	2	0	69	1.00
8605126--8605168	20	2.1	21	82	4	52	20	4	9	65	1.40
8605355--8605379	11	2.3	11	100	0	50	0	8	0	92	0.40
8610304--8610364	10	6.8	9	75	17	56	67	3	24	4	1.26
8610298--8610391	18	5.2	18	82	0	116	65	3	26	4	1.26
8610298--8610383	36	2.4	36	98	0	163	66	2	26	4	1.23
8619456--8619502	19	2.5	19	85	0	67	53	12	6	27	1.63
8620156--8620257	52	2.0	52	90	1	161	50	0	9	39	1.42
8620941--8621023	25	3.2	25	83	13	96	28	3	0	67	1.07
8621122--8621441	158	2.0	155	83	12	402	39	10	12	37	1.78
8625933--8626009	39	2.0	39	82	10	95	24	7	5	62	1.43
8626080--8626140	18	3.2	18	77	18	61	73	1	4	19	1.10
8626483--8626507	12	2.1	12	100	0	50	56	16	0	28	1.41
8627009--8627057	3	17.3	3	81	12	50	61	2	2	34	1.19
8627032--8627065	14	2.4	14	90	0	50	61	5	0	32	1.20
8627038--8627101	22	2.9	22	73	13	60	51	10	0	37	1.37
8627443--8627707	121	2.2	119	78	5	273	43	12	21	21	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8628539--8628631	9	10.1	9	69	12	55	5	11	4	78	1.06
8635614--8635676	5	12.8	5	73	21	53	77	1	3	17	0.97
8635594--8635676	19	4.6	18	77	14	73	74	1	3	20	1.03
8637842--8637892	14	3.7	13	85	12	66	86	3	5	3	0.79
8638879--8639540	121	5.6	120	74	8	372	19	22	14	43	1.87
8639281--8639499	118	1.8	118	82	4	278	18	23	15	41	1.89
8639779--8639869	3	30.3	3	78	12	89	32	2	4	60	1.29
8640695--8640779	23	3.8	22	77	10	82	20	1	4	74	1.07
8640843--8640876	12	2.9	12	86	4	52	76	17	0	5	0.98
8640986--8641055	30	2.3	30	80	5	77	38	12	11	37	1.80
8641719--8641785	3	23.3	3	86	8	95	65	1	1	31	1.10
8641719--8641785	23	2.9	23	86	4	100	65	1	1	31	1.10
8644906--8644930	2	12.5	2	100	0	50	48	0	0	52	1.00
8647578--8647617	19	2.0	20	90	4	64	90	2	5	2	0.62
8647588--8647623	17	2.1	17	89	0	54	88	2	8	0	0.59
8647586--8647620	14	2.6	14	90	4	54	91	2	5	0	0.50
8649126--8649587	224	2.0	227	92	4	759	31	22	17	27	1.97
8654923--8654955	2	16.5	2	87	12	50	48	3	0	48	1.17
8657036--8657065	14	2.1	15	93	6	53	40	0	0	60	0.97
8669342--8669414	31	2.3	32	86	6	105	30	26	13	30	1.94
8669876--8670032	52	3.0	53	89	3	214	25	24	8	40	1.84
8670049--8670095	22	2.1	22	88	0	67	51	25	2	21	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8670057--8670098	11	3.8	11	87	0	66	50	30	0	19	1.48
8670057--8670099	22	2.0	22	95	0	77	48	30	0	20	1.50
8670421--8670505	31	2.7	31	94	0	143	22	24	23	29	1.99
8670498--8670559	31	2.0	31	100	0	124	29	29	16	25	1.96
8671021--8671165	52	2.8	52	90	2	211	26	25	8	39	1.84
8671202--8671243	11	3.8	11	87	0	66	50	28	2	19	1.60
8671202--8671244	22	2.0	22	95	0	77	48	27	2	20	1.62
8674435--8674480	3	15.3	3	82	17	60	34	0	0	65	0.93
8674417--8674481	27	2.3	28	78	19	57	33	0	0	66	0.92
8674906--8675170	137	1.9	137	83	3	345	44	12	20	21	1.85
8675280--8675793	166	3.3	151	79	10	518	47	11	22	18	1.80
8675282--8675753	75	6.0	75	76	13	389	47	10	22	19	1.79
8675566--8675753	36	5.0	38	76	9	188	45	11	23	19	1.83
8675566--8675755	39	5.0	39	74	11	189	45	12	23	19	1.83
8689668--8689709	20	2.2	19	86	4	57	33	0	0	66	0.92
8689678--8689719	3	14.3	3	83	14	52	33	0	0	66	0.92
8690085--8690136	18	2.8	19	75	21	56	25	0	3	71	1.03
8691049--8691092	23	2.0	21	82	8	52	65	2	0	31	1.05
8701967--8702004	19	2.0	19	90	10	60	84	5	5	5	0.88
8703440--8703525	45	1.9	45	87	0	127	20	13	15	50	1.78
8703484--8703800	135	2.3	135	88	2	467	24	15	12	47	1.80
8703620--8703973	180	2.0	179	88	3	525	23	14	13	48	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8704692--8704719	14	2.0	14	100	0	56	71	14	0	14	1.15
8705440--8705479	21	1.9	21	84	0	53	27	2	17	52	1.57
8705838--8705948	15	7.1	16	81	9	140	47	31	0	19	1.56
8705842--8705997	45	3.4	45	83	6	188	47	30	1	21	1.59
8705842--8706015	15	11.5	15	74	11	115	45	32	1	20	1.59
8705974--8706015	14	2.9	15	85	7	59	45	38	0	16	1.48
8706000--8706126	29	4.4	29	72	11	91	45	32	1	20	1.61
8706109--8706159	23	2.3	21	83	9	66	45	21	1	31	1.63
8707442--8707485	21	2.1	21	95	0	79	15	27	22	34	1.95
8707446--8707491	21	2.2	21	88	0	65	19	28	19	32	1.96
8707829--8707883	22	2.5	22	75	0	56	43	1	0	54	1.10
8709437--8709489	22	2.4	22	78	9	63	54	0	3	41	1.18
8717860--8717888	15	1.9	15	100	0	58	89	0	0	10	0.48
8718055--8718472	193	2.1	198	84	6	528	37	4	6	51	1.47
8722146--8722180	2	17.5	2	93	0	61	51	0	2	45	1.16
8729078--8729112	17	2.0	18	88	5	54	48	2	0	48	1.16
8729219--8729257	2	19.5	2	83	0	51	41	0	7	51	1.31
8729219--8729257	12	3.2	12	88	0	60	41	0	7	51	1.31
8729208--8729257	24	2.1	24	88	0	73	38	2	12	48	1.52
8730763--8730787	13	1.9	13	100	0	50	40	0	8	52	1.31
8731777--8731836	27	2.2	27	87	0	84	35	3	28	33	1.74
8733993--8734059	10	6.9	10	77	14	52	46	13	8	31	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8733985--8734061	20	4.0	20	80	8	79	45	12	10	31	1.76
8733983--8734040	30	2.0	29	86	3	80	48	12	10	29	1.73
8734124--8734170	23	2.0	23	87	4	67	40	10	12	36	1.78
8736056--8736085	15	2.0	15	93	0	51	50	33	0	16	1.46
8736071--8736130	27	2.2	27	79	5	77	41	33	3	21	1.70
8736579--8736637	22	2.7	22	83	0	64	32	23	11	32	1.91
8737007--8737061	3	18.3	3	100	0	110	34	0	0	65	0.93
8737563--8737721	77	2.1	77	100	0	318	35	35	8	19	1.83
8742411--8742471	30	2.0	30	87	0	86	34	13	9	42	1.77
8742608--8742642	14	2.5	13	86	13	52	28	0	0	71	0.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131