genome.fa.s2.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  5  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
863884--863913	7	4.1	7	91	8	51	83	0	3	13	0.77
863884--863913	15	2.1	14	93	6	51	83	0	3	13	0.77
864963--865279	158	2.0	158	98	0	616	28	17	12	41	1.87
867037--867084	18	2.6	19	90	9	73	70	4	6	18	1.25
868993--869041	24	2.1	22	85	11	62	77	0	12	10	0.99
870287--870462	59	3.0	57	82	9	194	38	7	16	37	1.78
870547--870596	23	2.2	23	89	3	75	40	14	10	36	1.79
870763--871079	84	3.8	84	85	4	426	24	11	18	45	1.82
870763--871079	42	7.6	42	81	5	365	24	11	18	45	1.82
870763--871121	42	8.5	42	80	8	345	23	11	18	45	1.82
871326--871370	18	2.5	17	82	13	54	24	0	35	40	1.56
871693--871740	17	2.8	17	72	12	53	20	2	8	68	1.26
872349--872562	54	4.0	55	75	12	196	54	9	11	24	1.66
875570--875616	13	3.7	13	80	11	53	48	2	0	48	1.13
875732--875759	14	2.0	14	100	0	56	42	21	7	28	1.79
877109--877146	5	7.6	5	100	0	76	63	0	36	0	0.95
882906--882936	14	2.1	15	94	5	55	74	6	3	16	1.16
882973--883311	58	5.7	60	78	12	340	33	13	6	46	1.68
883020--883310	117	2.4	117	87	8	381	33	13	6	47	1.67
883350--883496	22	7.1	20	70	19	74	74	3	4	17	1.11
883446--883495	26	1.9	26	88	8	75	80	4	2	14	0.95
884477--884558	39	2.2	39	91	4	132	57	9	0	32	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
884553--884624	3	23.0	3	76	16	58	62	4	0	33	1.14
884554--884625	17	4.1	16	78	16	72	63	4	0	31	1.13
885351--885383	16	2.1	16	94	5	59	63	0	0	36	0.95
885508--885532	11	2.3	11	100	0	50	0	16	0	84	0.63
885502--885535	16	2.2	15	89	5	50	0	17	0	82	0.67
896737--896835	7	16.5	6	76	15	55	18	0	7	74	1.03
898009--898088	13	5.9	13	71	24	51	56	1	1	41	1.15
898009--898088	26	3.0	26	75	15	65	56	1	1	41	1.15
902011--902057	13	3.8	13	76	23	57	38	0	0	61	0.96
902049--902082	14	2.3	15	85	10	52	67	0	0	32	0.91
902203--902242	15	2.7	15	88	3	64	47	0	0	52	1.00
906112--906144	2	16.5	2	93	0	57	51	3	0	45	1.16
924203--924232	11	2.7	11	100	0	60	20	0	26	53	1.46
933880--933912	6	5.5	6	92	0	57	42	0	0	57	0.98
934579--934621	21	2.0	21	95	0	77	30	9	2	58	1.42
939173--939216	21	2.1	21	91	0	70	31	0	0	68	0.90
939475--939553	29	2.8	28	79	16	90	49	1	1	48	1.17
939601--939652	24	2.1	25	82	7	61	50	5	5	38	1.51
939663--939714	26	2.0	26	88	0	77	46	3	0	50	1.20
939796--939884	41	2.2	40	76	9	92	38	4	0	57	1.19
946231--946613	98	4.0	97	86	3	476	31	16	26	24	1.96
958538--958594	21	2.8	20	82	10	64	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
959418--959465	18	2.6	19	80	6	55	66	0	0	33	0.92
959435--959476	14	2.9	15	79	10	52	61	0	0	38	0.96
960684--960795	55	2.0	55	96	0	206	37	6	7	49	1.56
961610--961639	15	1.9	16	93	6	53	6	10	3	80	1.01
963238--963345	57	1.9	57	81	11	132	39	0	1	57	1.16
964460--964519	26	2.2	27	88	5	86	46	0	11	41	1.40
967999--968028	7	4.3	7	95	0	51	13	33	13	40	1.83
969580--969631	8	6.4	8	80	10	61	59	0	0	40	0.97
969584--969634	26	2.0	24	92	7	84	56	0	0	43	0.99
976895--976928	17	2.0	17	94	0	59	88	2	8	0	0.62
979088--979148	30	2.0	30	84	6	79	52	3	4	39	1.39
980291--980341	12	3.9	14	85	14	74	31	0	0	68	0.90
981560--981604	23	2.0	23	83	8	58	42	4	0	53	1.21
982200--982252	20	2.7	20	80	13	56	35	1	1	60	1.19
985738--986009	44	6.5	42	73	12	123	25	11	18	45	1.82
985793--986032	44	5.5	44	75	14	178	25	11	17	45	1.82
985895--986051	46	3.5	44	83	4	197	24	13	19	42	1.87
986227--986299	4	18.0	4	76	16	62	31	0	0	68	0.90
986233--986310	14	5.4	14	82	13	95	32	1	0	66	1.00
987466--987584	60	2.0	60	85	6	161	50	6	9	33	1.61
998683--998718	4	9.0	4	100	0	72	50	25	0	25	1.50
999289--999328	17	2.4	17	86	0	53	47	0	5	47	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1003279--1003344	26	2.5	26	87	5	87	34	1	15	48	1.54
1007304--1007367	20	3.3	19	75	12	60	31	0	29	39	1.57
1008683--1008776	45	2.1	45	90	4	145	52	4	11	31	1.57
1014356--1014508	74	2.1	74	83	1	191	32	18	19	29	1.96
1014356--1014522	73	2.3	74	82	2	185	31	20	19	28	1.97
1018998--1019035	20	1.9	20	88	0	58	13	55	10	21	1.67
1022871--1022904	17	1.9	18	88	5	52	14	32	11	41	1.82
1023487--1023529	17	2.7	16	79	10	52	60	0	2	37	1.10
1025854--1026027	52	3.4	51	78	12	153	44	1	15	37	1.57
1026565--1026686	25	4.9	25	82	2	120	45	3	26	24	1.68
1026933--1026974	11	3.8	11	75	12	50	26	0	26	47	1.52
1026999--1027155	52	3.0	51	80	5	172	44	5	19	31	1.72
1032642--1032720	29	2.7	30	86	7	108	68	1	1	29	1.05
1034273--1034307	17	2.1	17	89	5	54	54	20	8	17	1.68
1034885--1034913	6	5.0	6	91	8	51	68	0	0	31	0.89
1041259--1041357	6	16.5	6	71	8	58	44	1	3	51	1.23
1041259--1041328	36	1.9	36	85	8	97	40	0	2	57	1.14
1041259--1041321	11	5.4	11	76	14	63	39	0	3	57	1.15
1048510--1048577	24	2.9	23	80	6	75	52	1	2	42	1.25
1048544--1048608	30	2.2	30	83	10	80	56	1	1	40	1.18
1048580--1048631	17	3.2	16	81	13	61	50	1	0	48	1.12
1049392--1049416	11	2.3	11	100	0	50	0	8	0	92	0.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1052051--1052083	14	2.3	15	89	5	50	60	0	0	39	0.97
1059055--1059158	54	1.9	54	92	3	174	31	16	20	31	1.94
1071592--1071625	2	17.0	2	93	0	59	50	2	0	47	1.16
1071720--1071751	2	16.0	2	100	0	64	50	0	0	50	1.00
1076609--1076672	31	2.1	31	100	0	128	35	23	6	34	1.80
1079391--1079460	34	2.0	34	83	2	86	42	5	5	45	1.51
1079412--1079488	34	2.3	34	80	8	86	44	3	7	44	1.51
1089201--1089248	15	3.1	15	76	8	51	29	0	0	70	0.87
1100649--1100697	25	2.0	25	91	0	80	36	12	14	36	1.83
1102078--1102232	78	2.0	78	85	0	211	16	30	22	29	1.96
1102466--1102743	140	2.0	140	94	0	484	20	26	22	29	1.98
1102618--1102771	77	2.0	77	88	0	227	20	28	22	28	1.98
1102857--1102904	25	1.9	25	91	0	78	33	16	27	22	1.96
1106747--1106894	72	2.1	71	94	1	260	29	21	7	41	1.80
1113536--1113562	2	13.5	2	100	0	54	48	0	51	0	1.00
1138111--1138139	2	14.5	2	100	0	58	51	0	0	48	1.00
1138139--1138169	2	15.5	2	100	0	62	51	0	48	0	1.00
1138622--1138674	28	2.0	26	88	7	79	47	7	9	35	1.64
1144206--1144236	7	4.3	7	95	4	53	38	3	0	58	1.15
1144630--1144697	20	2.8	26	70	25	76	36	17	14	30	1.90
1144864--1144896	18	1.9	17	88	11	50	24	0	0	75	0.80
1150042--1150068	6	4.5	6	100	0	54	29	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1158536--1158572	15	2.5	15	95	0	65	45	10	0	43	1.39
1161007--1161063	30	1.9	30	85	7	80	43	1	1	52	1.21
1165989--1166197	106	2.0	106	84	3	278	27	18	21	33	1.96
1167732--1167780	24	2.0	24	88	0	71	46	4	2	46	1.33
1167738--1167789	24	2.2	24	82	6	61	50	5	0	44	1.26
1198771--1198910	34	4.2	34	75	1	122	42	11	7	37	1.70
1204266--1204299	6	5.7	6	89	0	50	29	50	17	2	1.61
1221487--1221585	32	3.1	32	84	11	114	58	2	1	38	1.16
1223290--1223327	20	1.9	20	84	10	51	44	15	2	36	1.61
1234877--1234918	17	2.5	16	79	20	50	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131