genome.fa.s2.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  26  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6251583--6251669	18	5.1	18	74	20	55	74	3	2	19	1.07
6251648--6251681	18	1.9	17	88	5	50	79	0	8	11	0.94
6252522--6252607	3	31.3	3	74	17	80	65	2	0	32	1.06
6252524--6252596	10	7.1	10	74	14	60	67	1	0	31	1.00
6252530--6252613	28	3.0	27	75	16	82	65	2	1	30	1.13
6252953--6252988	15	2.4	14	86	13	54	83	0	5	11	0.80
6253728--6253763	3	12.0	3	100	0	72	66	0	0	33	0.92
6257391--6257431	7	5.9	7	83	11	57	82	0	2	14	0.76
6257391--6257432	14	3.0	14	89	0	66	80	0	2	16	0.81
6264705--6264887	46	4.0	45	80	5	125	30	11	18	39	1.86
6264757--6264882	46	2.7	45	81	7	128	29	11	18	41	1.85
6265801--6265830	13	2.3	13	94	0	51	83	13	0	3	0.77
6266779--6266820	22	1.9	22	90	0	66	40	0	4	54	1.21
6267925--6267971	22	2.2	21	84	3	58	59	0	0	40	0.97
6267926--6267979	26	2.1	26	85	0	72	55	0	0	44	0.99
6269010--6269058	20	2.5	20	86	0	71	65	12	0	22	1.26
6269125--6269156	11	2.9	11	100	0	64	75	0	0	25	0.81
6269133--6269169	15	2.5	15	90	0	56	67	0	0	32	0.91
6269150--6269175	11	2.4	11	100	0	52	57	0	0	42	0.98
6269125--6269158	4	9.0	4	87	12	54	73	0	0	26	0.83
6270298--6270358	22	2.5	24	77	17	65	55	3	0	40	1.16
6270302--6270385	42	2.0	41	81	4	98	54	1	1	42	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6270415--6270462	18	2.8	17	77	3	51	52	2	4	41	1.32
6271186--6271221	12	3.0	12	87	0	54	69	0	2	27	1.02
6273963--6274004	21	2.0	21	95	0	75	28	7	16	47	1.73
6274490--6274518	2	14.5	2	100	0	58	48	0	0	51	1.00
6274555--6274607	27	1.9	28	88	3	81	79	11	3	5	1.03
6274555--6274607	28	1.9	27	88	3	79	79	11	3	5	1.03
6276506--6276887	58	6.4	58	80	10	425	38	11	6	43	1.67
6276506--6276896	59	6.6	58	81	9	425	38	11	6	42	1.68
6276923--6276989	6	11.5	6	74	16	61	79	0	4	16	0.90
6276919--6276984	21	3.0	21	80	12	71	78	0	6	15	0.93
6276923--6276989	33	2.1	31	86	5	89	79	0	4	16	0.90
6277006--6277046	3	14.0	3	89	5	66	65	2	0	31	1.05
6277042--6277066	4	6.2	4	100	0	50	76	0	0	24	0.80
6277409--6277473	27	2.4	27	85	10	80	69	1	7	21	1.22
6277372--6277507	17	8.5	17	71	16	80	69	1	5	22	1.18
6277458--6277532	6	12.0	6	73	12	53	72	0	2	25	0.98
6277425--6277529	24	4.2	24	75	8	86	69	0	4	24	1.14
6277414--6277532	30	3.8	30	77	13	100	70	0	5	23	1.12
6277773--6277820	25	1.9	25	87	8	71	47	4	6	41	1.48
6278158--6278208	26	2.0	26	85	7	70	43	11	11	33	1.78
6279124--6279241	3	40.7	3	85	8	111	23	2	1	72	1.07
6279262--6279311	14	3.5	14	78	5	55	2	16	2	80	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6280128--6280173	19	2.5	18	85	3	56	13	4	2	80	0.95
6280141--6280179	15	2.8	13	85	14	51	15	0	2	82	0.79
6280128--6280213	13	6.3	13	71	17	50	15	4	3	76	1.08
6290561--6290586	9	2.9	9	100	0	52	92	0	0	7	0.39
6291388--6291601	117	1.8	117	82	4	270	24	21	14	40	1.89
6291812--6292030	114	1.9	114	81	0	267	26	26	14	32	1.95
6292012--6292122	54	2.1	54	84	3	143	22	27	13	36	1.92
6292032--6292142	54	2.1	54	86	3	152	20	25	16	37	1.93
6292315--6292404	26	3.5	25	79	11	92	21	24	24	30	1.99
6292593--6292640	3	16.3	3	82	4	62	29	2	0	68	1.01
6297022--6297114	8	11.8	8	67	6	55	48	29	2	20	1.61
6297015--6297113	32	3.1	32	84	8	114	49	27	2	21	1.60
6297040--6297114	16	4.8	15	81	4	87	50	29	1	18	1.55
6301720--6301775	27	2.2	27	84	9	73	44	3	5	46	1.43
6317635--6318013	190	2.0	187	91	2	616	38	18	16	26	1.91
6322870--6322902	15	2.1	16	94	5	59	75	9	0	15	1.03
6334861--6334933	8	9.6	8	86	8	100	76	1	9	12	1.07
6334862--6334901	21	1.9	21	94	0	71	77	2	7	12	1.07
6334862--6334957	24	4.2	22	81	13	81	76	2	12	9	1.11
6334883--6334957	31	2.4	31	82	14	84	76	1	14	8	1.08
6336112--6336177	24	2.8	23	73	8	62	28	7	21	42	1.80
6336112--6336181	22	3.1	22	69	15	61	28	8	20	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6336112--6336209	46	2.1	46	81	7	110	32	9	16	41	1.80
6336218--6336306	41	2.2	42	85	4	119	35	10	8	44	1.70
6336591--6336700	34	3.2	34	71	10	89	40	9	10	40	1.70
6336639--6336739	51	2.0	51	86	7	143	37	8	11	41	1.73
6336658--6336756	51	1.9	51	83	4	128	39	9	11	40	1.72
6336636--6336791	17	9.2	17	73	0	105	34	10	13	41	1.78
6336814--6336888	18	4.2	18	82	3	89	32	14	10	42	1.80
6336857--6336893	18	2.1	18	89	0	56	40	13	5	40	1.67
6338122--6338181	26	2.3	26	82	2	77	70	6	16	6	1.31
6338987--6339040	17	3.4	16	77	15	58	62	0	5	31	1.18
6342320--6342353	14	2.5	13	86	9	50	8	2	0	88	0.62
6344895--6344940	16	2.7	16	81	15	56	80	0	13	6	0.89
6346359--6346551	46	4.2	46	76	9	162	36	7	13	41	1.74
6346451--6346513	23	2.7	24	80	14	78	36	4	12	46	1.63
6346842--6346880	17	2.2	18	90	4	62	43	12	12	30	1.81
6346904--6346956	16	3.2	16	86	2	61	28	9	18	43	1.81
6346937--6347034	33	3.0	33	77	8	94	39	9	10	40	1.71
6346977--6347047	33	2.1	33	82	7	81	42	7	7	43	1.59
6346993--6347100	50	2.2	50	83	6	130	37	12	8	41	1.74
6346993--6347150	33	4.8	34	76	8	146	36	14	10	39	1.80
6346993--6347160	66	2.5	66	77	4	178	36	13	10	38	1.80
6347020--6347150	49	2.7	47	83	4	136	35	16	10	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6347073--6347193	49	2.4	50	84	1	154	38	16	10	33	1.83
6347315--6347368	17	3.1	18	78	7	67	24	1	24	50	1.60
6347315--6347392	36	2.2	34	84	4	93	26	6	23	43	1.77
6347784--6347810	6	4.5	6	100	0	54	33	0	0	66	0.92
6347772--6347810	18	2.2	18	85	0	51	30	5	2	61	1.31
6351229--6351284	20	2.7	21	86	8	71	21	3	0	75	0.96
6352549--6352582	3	11.0	3	93	6	59	64	0	0	35	0.94
6352757--6352842	44	2.0	43	84	6	111	39	11	13	34	1.82
6352979--6353471	47	10.2	48	72	13	311	39	18	10	31	1.85
6352976--6353471	94	5.1	94	72	14	350	39	18	10	31	1.85
6352979--6353477	143	3.4	143	76	12	473	39	18	10	31	1.84
6353383--6353474	46	2.0	47	84	2	123	38	20	9	31	1.85
6352981--6353635	143	4.4	151	76	10	412	40	18	9	31	1.83
6353452--6353574	57	2.2	56	79	7	133	44	18	8	27	1.80
6353469--6353586	57	2.1	58	85	4	159	45	16	8	28	1.77
6365758--6365807	22	2.4	21	83	9	66	74	2	2	22	1.03
6366779--6366824	5	9.2	5	80	15	51	78	2	19	0	0.86
6366779--6366824	16	3.1	14	81	12	56	78	2	19	0	0.86
6368950--6368980	1	31.0	1	100	0	62	100	0	0	0	0.00
6380429--6380457	2	14.5	2	100	0	58	48	0	0	51	1.00
6382765--6382792	2	14.0	2	100	0	56	50	0	0	50	1.00
6383288--6383312	12	2.1	12	100	0	50	76	0	24	0	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6384247--6384275	2	14.5	2	100	0	58	51	0	48	0	1.00
6385229--6385262	2	17.0	2	93	0	59	47	2	0	50	1.16
6394727--6395049	57	5.6	57	83	5	391	47	4	8	38	1.57
6394720--6395046	114	2.9	112	87	4	440	48	4	9	37	1.56
6398965--6399011	19	2.6	19	83	9	64	78	0	10	10	0.96
6400221--6400330	45	2.5	44	77	4	114	32	8	18	40	1.80
6400342--6400384	17	2.5	17	92	7	70	23	9	16	51	1.73
6400354--6400539	65	2.8	64	75	9	178	31	16	10	42	1.81
6400535--6400609	34	2.2	34	90	2	96	33	12	13	41	1.81
6400586--6400650	34	1.9	34	87	6	96	38	10	10	40	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131