genome.fa.s2.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  111  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19818463--19818526	17	3.7	18	74	19	64	54	1	1	42	1.19
19818336--19818642	128	2.4	126	80	9	315	42	6	5	44	1.54
19819011--19819232	117	1.9	116	86	7	317	44	10	4	40	1.57
19819134--19819474	129	2.7	127	81	6	370	42	10	4	41	1.61
19819680--19819718	19	2.0	20	85	5	53	35	0	0	64	0.94
19819750--19819791	3	14.0	3	85	9	59	64	0	0	35	0.94
19819790--19819826	3	12.3	3	100	0	74	35	0	0	64	0.94
19820873--19820897	2	12.5	2	100	0	50	52	0	0	48	1.00
19839849--19839887	17	2.2	19	86	9	55	61	0	0	38	0.96
19840064--19840124	21	2.9	21	77	18	65	52	0	1	45	1.10
19841132--19841171	21	1.9	21	89	0	62	57	0	0	42	0.98
19842667--19842698	2	16.5	2	93	6	57	50	0	0	50	1.00
19842800--19842870	31	2.3	31	85	4	90	40	1	5	52	1.34
19845430--19845469	17	2.4	16	84	12	53	57	0	0	42	0.98
19845934--19845985	22	2.4	21	75	12	52	40	1	1	55	1.22
19846008--19846050	20	2.3	19	81	18	54	62	2	0	34	1.08
19847333--19847393	14	4.4	14	76	11	54	40	0	1	57	1.08
19847345--19847406	30	2.1	30	84	0	79	43	0	1	54	1.09
19847379--19847430	22	2.5	22	93	6	90	50	0	0	50	1.00
19847695--19847766	28	2.4	32	75	13	73	43	0	5	51	1.25
19847784--19847821	20	1.9	20	88	0	58	26	2	2	68	1.16
19848841--19848870	10	3.1	10	95	4	53	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19849705--19849729	2	12.5	2	100	0	50	48	0	0	52	1.00
19850388--19850431	21	2.1	20	80	12	52	54	4	2	38	1.33
19850404--19850452	12	4.3	12	72	15	50	51	10	4	34	1.55
19850653--19850683	16	1.9	16	93	0	53	80	0	19	0	0.71
19851295--19851353	32	1.9	33	86	13	90	45	6	0	47	1.29
19852221--19852256	17	2.1	18	90	10	58	27	0	0	72	0.85
19857726--19857760	19	1.9	18	88	11	54	20	14	0	65	1.26
19859593--19859632	14	2.9	13	85	7	53	50	0	2	47	1.14
19859910--19859962	24	2.2	24	82	0	61	49	0	1	49	1.12
19860228--19860278	24	2.1	25	88	3	77	50	0	1	47	1.12
19860507--19860546	19	2.1	19	86	9	55	52	0	0	47	1.00
19860623--19860731	54	2.0	54	98	1	211	33	7	6	53	1.54
19861569--19861615	13	3.6	14	80	11	55	57	0	0	42	0.98
19861576--19861696	20	6.0	20	68	21	67	52	3	1	42	1.27
19861646--19861729	21	4.0	20	77	14	80	46	2	0	51	1.14
19861668--19861773	20	5.3	20	69	20	69	48	3	0	47	1.26
19861752--19861798	11	4.4	11	79	15	53	46	0	0	53	1.00
19861714--19861867	73	2.2	71	82	5	177	45	2	3	48	1.32
19861852--19861944	40	2.3	40	80	7	100	46	4	2	47	1.34
19862207--19862284	10	7.7	10	77	4	68	47	1	5	46	1.33
19862207--19862284	20	3.8	20	83	6	86	47	1	5	46	1.33
19862319--19862442	57	2.3	52	80	9	131	41	2	3	53	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19862597--19862678	38	2.2	37	84	6	103	41	2	7	48	1.44
19862660--19862757	29	3.3	29	73	8	90	45	4	1	48	1.28
19862669--19862783	60	1.9	58	84	3	149	42	3	4	49	1.39
19862792--19862836	17	2.7	16	86	10	63	44	0	2	53	1.13
19862660--19862840	16	11.8	16	63	17	71	44	2	3	49	1.32
19863310--19863349	21	1.9	21	85	10	55	0	32	7	60	1.25
19867442--19867472	7	4.4	7	100	0	62	83	0	0	16	0.64
19880168--19880358	65	2.9	63	75	7	161	37	12	13	36	1.82
19880627--19880705	24	3.2	24	66	13	61	29	13	10	46	1.76
19880605--19880705	50	2.0	51	96	1	186	31	15	8	43	1.78
19880625--19880708	25	3.4	25	66	12	64	29	13	10	46	1.76
19882972--19883012	21	2.0	20	85	4	55	39	12	19	29	1.88
19889054--19889136	31	2.6	32	88	7	125	21	1	4	72	1.10
19890476--19890526	23	2.2	23	82	6	59	7	5	7	78	1.09
19891804--19891899	41	2.3	41	80	3	113	34	15	17	32	1.92
19891901--19892060	42	3.8	42	82	5	180	33	13	19	33	1.91
19891797--19891985	95	2.0	94	84	3	245	33	13	19	33	1.91
19892092--19892193	39	2.6	39	82	3	125	30	7	19	42	1.80
19897990--19898038	25	2.0	25	88	8	73	67	4	2	26	1.19
19901753--19901796	20	2.2	20	91	0	70	50	4	6	38	1.50
19905951--19905975	8	3.1	8	100	0	50	76	0	0	24	0.80
19905953--19906045	28	3.5	26	74	12	73	65	1	1	32	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19907558--19909352	906	2.0	908	79	5	1925	34	19	9	36	1.84
19909945--19909988	22	2.0	23	82	13	56	47	2	0	50	1.13
19914335--19914380	24	1.9	24	81	0	56	45	2	4	47	1.34
19914667--19914708	17	2.4	18	84	8	59	57	0	2	40	1.12
19922715--19922761	23	2.0	23	84	8	60	12	0	17	70	1.17
19923184--19923222	3	13.7	3	89	10	64	28	0	0	71	0.86
19927325--19927413	44	2.0	44	93	4	153	46	1	5	47	1.33
19929717--19929792	39	1.9	39	86	2	107	40	30	3	25	1.73
19934229--19934278	22	2.2	23	86	10	68	50	0	0	50	1.00
19934222--19934273	19	2.7	19	80	16	63	51	0	0	48	1.00
19934651--19934691	22	1.9	21	90	5	64	53	0	2	43	1.13
19934651--19934691	21	1.9	22	85	5	57	53	0	2	43	1.13
19942253--19942379	64	2.0	64	80	9	143	48	5	4	41	1.47
19943268--19943362	28	3.1	28	80	10	91	46	3	1	49	1.24
19944058--19944102	21	2.2	21	84	11	58	33	6	2	57	1.37
19946124--19946153	8	3.8	8	95	0	51	63	0	0	36	0.95
19946725--19946787	28	2.3	29	81	13	80	53	0	3	42	1.16
19946776--19946825	16	3.1	16	75	18	59	50	0	0	50	1.00
19947297--19947337	21	2.0	21	85	9	57	43	0	0	56	0.99
19949344--19949481	62	2.2	62	92	1	233	24	10	11	53	1.68
19955527--19955642	50	2.4	51	79	5	132	37	12	16	33	1.87
19956141--19956187	17	2.8	16	84	9	58	21	0	4	74	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19956146--19956188	18	2.4	18	85	11	54	20	0	4	74	1.00
19958288--19958469	87	2.1	87	95	0	328	39	7	9	43	1.66
19969052--19969076	13	1.9	13	100	0	50	72	12	0	16	1.13
19969112--19969416	61	5.0	61	79	9	284	34	13	7	44	1.73
19969174--19969391	59	3.7	59	84	6	235	35	14	7	42	1.73
19969421--19969500	25	3.2	24	79	15	90	75	0	6	18	1.01
19969459--19969500	9	4.9	9	82	11	61	80	0	0	19	0.70
19969459--19969507	5	9.8	5	83	16	66	79	0	2	18	0.83
19969459--19969560	16	6.5	16	70	16	72	73	3	1	20	1.09
19969531--19969584	24	2.3	23	84	9	65	79	5	1	12	0.98
19970371--19970424	22	2.5	21	79	8	54	61	3	7	27	1.40
19970435--19970481	6	7.8	6	77	17	53	82	2	0	14	0.75
19970435--19970484	7	7.0	7	80	19	59	82	2	0	16	0.77
19970443--19970484	13	3.1	13	93	6	66	83	0	0	16	0.65
19970527--19970555	11	2.5	12	94	5	51	79	0	0	20	0.74
19970720--19970838	1	119.0	1	71	0	85	1	1	10	85	0.74
19970721--19970840	27	4.6	25	76	17	118	2	1	10	85	0.78
19970720--19970838	29	4.2	28	78	15	111	1	1	10	85	0.74
19970845--19971390	41	13.1	41	92	2	867	36	23	17	22	1.94
19970845--19971390	83	6.6	82	92	2	867	36	23	17	22	1.94
19970845--19971390	207	2.6	207	91	2	871	36	23	17	22	1.94
19972613--19972677	15	4.1	15	71	15	51	6	15	1	76	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19976463--19976487	13	1.9	13	100	0	50	72	12	0	16	1.13
19976525--19976824	61	5.0	59	86	4	397	32	12	7	47	1.69
19976740--19976764	13	1.9	13	100	0	50	20	0	0	80	0.72
19976842--19976911	26	2.5	27	80	17	72	78	1	5	14	1.00
19976865--19976903	15	2.6	15	80	15	53	84	2	0	12	0.72
19976871--19976910	11	3.7	11	86	3	55	82	2	2	12	0.87
19976832--19976903	26	2.7	26	77	14	76	77	1	5	15	1.01
19976934--19976979	24	2.0	24	86	4	67	80	6	2	10	0.98
19977302--19977345	19	2.2	20	88	4	63	27	15	29	27	1.96
19977458--19977511	25	2.2	25	83	6	65	37	18	5	38	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131